data_7RKH # _model_server_result.job_id bh6tPOmyX-KvriZtmnWw4w _model_server_result.datetime_utc '2025-07-05 12:32:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":603}' # _entry.id 7RKH # _exptl.entry_id 7RKH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RKH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 O N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 70 D ASP 70 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A OD2 ASP 70 D ASP 70 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc3 E O2B UTP . D UTP 601 1_555 Q MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc4 F O3G ATP . D ATP 602 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc5 F O1B ATP . D ATP 602 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc6 H MG MG . D MG 604 1_555 R O1B UTP . C UTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc7 B OD1 ASP 70 A ASP 70 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 B OD2 ASP 70 A ASP 70 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc9 I O1B UTP . A UTP 601 1_555 M MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc10 J O3G ATP . A ATP 602 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc11 J O1B ATP . A ATP 602 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc12 L MG MG . A MG 604 1_555 N O2B UTP . B UTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc13 C OD1 ASP 70 B ASP 70 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc14 C OD2 ASP 70 B ASP 70 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc15 O O3G ATP . B ATP 603 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc16 O O1B ATP . B ATP 603 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc17 D OD1 ASP 70 C ASP 70 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc18 D OD2 ASP 70 C ASP 70 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc19 S O3G ATP . C ATP 603 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc20 S O1B ATP . C ATP 603 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7RKH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UTP D 1 601 602 UTP UTP . F 3 ATP D 1 602 601 ATP ATP . G 4 MG D 1 603 603 MG MG . H 4 MG D 1 604 604 MG MG . I 2 UTP A 1 601 602 UTP UTP . J 3 ATP A 1 602 601 ATP ATP . K 4 MG A 1 603 603 MG MG . L 4 MG A 1 604 604 MG MG . M 4 MG B 1 601 604 MG MG . N 2 UTP B 1 602 602 UTP UTP . O 3 ATP B 1 603 601 ATP ATP . P 4 MG B 1 604 603 MG MG . Q 4 MG C 1 601 604 MG MG . R 2 UTP C 1 602 602 UTP UTP . S 3 ATP C 1 603 601 ATP ATP . T 4 MG C 1 604 603 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 3 188.568 163.417 152.962 1 43.49 ? PG ATP 603 B 1 HETATM 2 O O1G ATP . . . O 3 187.836 164.674 152.98 1 43.49 ? O1G ATP 603 B 1 HETATM 3 O O2G ATP . . . O 3 190.027 163.629 153.033 1 43.49 ? O2G ATP 603 B 1 HETATM 4 O O3G ATP . . . O 3 188.189 162.571 151.824 1 43.49 ? O3G ATP 603 B 1 HETATM 5 P PB ATP . . . O 3 188.433 161.514 155.396 1 43.49 ? PB ATP 603 B 1 HETATM 6 O O1B ATP . . . O 3 188.115 160.352 154.801 1 43.49 ? O1B ATP 603 B 1 HETATM 7 O O2B ATP . . . O 3 187.874 161.759 156.674 1 43.49 ? O2B ATP 603 B 1 HETATM 8 O O3B ATP . . . O 3 188.134 162.653 154.318 1 43.49 ? O3B ATP 603 B 1 HETATM 9 P PA ATP . . . O 3 191.002 160.403 154.503 1 43.49 ? PA ATP 603 B 1 HETATM 10 O O1A ATP . . . O 3 190.856 158.967 154.625 1 43.49 ? O1A ATP 603 B 1 HETATM 11 O O2A ATP . . . O 3 190.983 160.876 153.113 1 43.49 ? O2A ATP 603 B 1 HETATM 12 O O3A ATP . . . O 3 189.988 161.297 155.355 1 43.49 ? O3A ATP 603 B 1 HETATM 13 O O5' ATP . . . O 3 192.293 160.861 155.309 1 43.49 ? O5' ATP 603 B 1 HETATM 14 C C5' ATP . . . O 3 193.217 161.851 154.827 1 43.49 ? C5' ATP 603 B 1 HETATM 15 C C4' ATP . . . O 3 194.495 161.15 154.47 1 43.49 ? C4' ATP 603 B 1 HETATM 16 O O4' ATP . . . O 3 195.071 160.714 155.711 1 43.49 ? O4' ATP 603 B 1 HETATM 17 C C3' ATP . . . O 3 194.387 159.852 153.668 1 43.49 ? C3' ATP 603 B 1 HETATM 18 O O3' ATP . . . O 3 194.285 160.149 152.279 1 43.49 ? O3' ATP 603 B 1 HETATM 19 C C2' ATP . . . O 3 195.633 159.083 154.116 1 43.49 ? C2' ATP 603 B 1 HETATM 20 O O2' ATP . . . O 3 196.679 159.256 153.193 1 43.49 ? O2' ATP 603 B 1 HETATM 21 C C1' ATP . . . O 3 195.923 159.625 155.521 1 43.49 ? C1' ATP 603 B 1 HETATM 22 N N9 ATP . . . O 3 195.714 158.795 156.731 1 43.49 ? N9 ATP 603 B 1 HETATM 23 C C8 ATP . . . O 3 194.56 158.354 157.249 1 43.49 ? C8 ATP 603 B 1 HETATM 24 N N7 ATP . . . O 3 194.699 157.673 158.358 1 43.49 ? N7 ATP 603 B 1 HETATM 25 C C5 ATP . . . O 3 196.046 157.726 158.611 1 43.49 ? C5 ATP 603 B 1 HETATM 26 C C6 ATP . . . O 3 196.833 157.221 159.644 1 43.49 ? C6 ATP 603 B 1 HETATM 27 N N6 ATP . . . O 3 196.368 156.543 160.676 1 43.49 ? N6 ATP 603 B 1 HETATM 28 N N1 ATP . . . O 3 198.147 157.462 159.594 1 43.49 ? N1 ATP 603 B 1 HETATM 29 C C2 ATP . . . O 3 198.637 158.146 158.561 1 43.49 ? C2 ATP 603 B 1 HETATM 30 N N3 ATP . . . O 3 197.999 158.668 157.526 1 43.49 ? N3 ATP 603 B 1 HETATM 31 C C4 ATP . . . O 3 196.683 158.422 157.618 1 43.49 ? C4 ATP 603 B 1 HETATM 32 H "H5'1" ATP . . . O 3 193.391 162.521 155.534 1 43.49 ? "H5'1" ATP 603 B 1 HETATM 33 H "H5'2" ATP . . . O 3 192.855 162.318 154.038 1 43.49 ? "H5'2" ATP 603 B 1 HETATM 34 H H4' ATP . . . O 3 195.099 161.784 154.03 1 43.49 ? H4' ATP 603 B 1 HETATM 35 H H3' ATP . . . O 3 193.604 159.321 153.93 1 43.49 ? H3' ATP 603 B 1 HETATM 36 H HO3' ATP . . . O 3 193.464 160.192 152.068 1 43.49 ? HO3' ATP 603 B 1 HETATM 37 H H2' ATP . . . O 3 195.45 158.146 154.152 1 43.49 ? H2' ATP 603 B 1 HETATM 38 H HO2' ATP . . . O 3 196.569 158.714 152.549 1 43.49 ? HO2' ATP 603 B 1 HETATM 39 H H1' ATP . . . O 3 196.849 159.951 155.527 1 43.49 ? H1' ATP 603 B 1 HETATM 40 H H8 ATP . . . O 3 193.732 158.474 156.826 1 43.49 ? H8 ATP 603 B 1 HETATM 41 H HN61 ATP . . . O 3 196.727 156.656 161.469 1 43.49 ? HN61 ATP 603 B 1 HETATM 42 H HN62 ATP . . . O 3 195.704 155.984 160.561 1 43.49 ? HN62 ATP 603 B 1 HETATM 43 H H2 ATP . . . O 3 199.57 158.283 158.573 1 43.49 ? H2 ATP 603 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 535 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #