data_7RKI
#
_model_server_result.job_id            TDDX8gBMhgPgn57NFtTeeQ 
_model_server_result.datetime_utc      '2024-11-22 08:27:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    7RKI 
#
_exptl.entry_id    7RKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RKI 
_cell.length_a            57.745 
_cell.length_b            59.655 
_cell.length_c            67.288 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 205 n n 
C1 O1 MAN sing 206 n n 
C1 O5 MAN sing 207 n n 
C1 H1 MAN sing 208 n n 
C2 C3 MAN sing 209 n n 
C2 O2 MAN sing 210 n n 
C2 H2 MAN sing 211 n n 
C3 C4 MAN sing 212 n n 
C3 O3 MAN sing 213 n n 
C3 H3 MAN sing 214 n n 
C4 C5 MAN sing 215 n n 
C4 O4 MAN sing 216 n n 
C4 H4 MAN sing 217 n n 
C5 C6 MAN sing 218 n n 
C5 O5 MAN sing 219 n n 
C5 H5 MAN sing 220 n n 
C6 O6 MAN sing 221 n n 
C6 H61 MAN sing 222 n n 
C6 H62 MAN sing 223 n n 
O1 HO1 MAN sing 224 n n 
O2 HO2 MAN sing 225 n n 
O3 HO3 MAN sing 226 n n 
O4 HO4 MAN sing 227 n n 
O6 HO6 MAN sing 228 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7RKI 
_atom_sites.fract_transf_matrix[1][1]    0.017318 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016763 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MAN A 1 201 122 MAN MAN . 
D 2 MAN A 1 202 123 MAN MAN . 
E 2 MAN B 1 201 1 MAN MAN . 
F 3 HOH A 1 301 102 HOH HOH . 
F 3 HOH A 2 302 118 HOH HOH . 
F 3 HOH A 3 303 73 HOH HOH . 
F 3 HOH A 4 304 67 HOH HOH . 
F 3 HOH A 5 305 120 HOH HOH . 
F 3 HOH A 6 306 6 HOH HOH . 
F 3 HOH A 7 307 28 HOH HOH . 
F 3 HOH A 8 308 49 HOH HOH . 
F 3 HOH A 9 309 25 HOH HOH . 
F 3 HOH A 10 310 32 HOH HOH . 
F 3 HOH A 11 311 4 HOH HOH . 
F 3 HOH A 12 312 35 HOH HOH . 
F 3 HOH A 13 313 3 HOH HOH . 
F 3 HOH A 14 314 19 HOH HOH . 
F 3 HOH A 15 315 40 HOH HOH . 
F 3 HOH A 16 316 20 HOH HOH . 
F 3 HOH A 17 317 47 HOH HOH . 
F 3 HOH A 18 318 21 HOH HOH . 
F 3 HOH A 19 319 26 HOH HOH . 
F 3 HOH A 20 320 14 HOH HOH . 
F 3 HOH A 21 321 22 HOH HOH . 
F 3 HOH A 22 322 37 HOH HOH . 
F 3 HOH A 23 323 61 HOH HOH . 
F 3 HOH A 24 324 9 HOH HOH . 
F 3 HOH A 25 325 10 HOH HOH . 
F 3 HOH A 26 326 97 HOH HOH . 
F 3 HOH A 27 327 69 HOH HOH . 
F 3 HOH A 28 328 60 HOH HOH . 
F 3 HOH A 29 329 55 HOH HOH . 
F 3 HOH A 30 330 84 HOH HOH . 
F 3 HOH A 31 331 85 HOH HOH . 
F 3 HOH A 32 332 29 HOH HOH . 
F 3 HOH A 33 333 8 HOH HOH . 
F 3 HOH A 34 334 57 HOH HOH . 
F 3 HOH A 35 335 109 HOH HOH . 
F 3 HOH A 36 336 101 HOH HOH . 
F 3 HOH A 37 337 54 HOH HOH . 
F 3 HOH A 38 338 89 HOH HOH . 
F 3 HOH A 39 339 95 HOH HOH . 
F 3 HOH A 40 340 94 HOH HOH . 
F 3 HOH A 41 341 33 HOH HOH . 
F 3 HOH A 42 342 58 HOH HOH . 
F 3 HOH A 43 343 52 HOH HOH . 
F 3 HOH A 44 344 38 HOH HOH . 
F 3 HOH A 45 345 99 HOH HOH . 
F 3 HOH A 46 346 104 HOH HOH . 
F 3 HOH A 47 347 90 HOH HOH . 
F 3 HOH A 48 348 108 HOH HOH . 
F 3 HOH A 49 349 56 HOH HOH . 
F 3 HOH A 50 350 13 HOH HOH . 
F 3 HOH A 51 351 48 HOH HOH . 
F 3 HOH A 52 352 42 HOH HOH . 
F 3 HOH A 53 353 74 HOH HOH . 
F 3 HOH A 54 354 76 HOH HOH . 
F 3 HOH A 55 355 62 HOH HOH . 
F 3 HOH A 56 356 79 HOH HOH . 
F 3 HOH A 57 357 80 HOH HOH . 
F 3 HOH A 58 358 119 HOH HOH . 
F 3 HOH A 59 359 117 HOH HOH . 
F 3 HOH A 60 360 112 HOH HOH . 
F 3 HOH A 61 361 45 HOH HOH . 
F 3 HOH A 62 362 121 HOH HOH . 
F 3 HOH A 63 363 124 HOH HOH . 
F 3 HOH A 64 364 87 HOH HOH . 
F 3 HOH A 65 365 116 HOH HOH . 
F 3 HOH A 66 366 77 HOH HOH . 
G 3 HOH B 1 301 91 HOH HOH . 
G 3 HOH B 2 302 92 HOH HOH . 
G 3 HOH B 3 303 66 HOH HOH . 
G 3 HOH B 4 304 98 HOH HOH . 
G 3 HOH B 5 305 88 HOH HOH . 
G 3 HOH B 6 306 5 HOH HOH . 
G 3 HOH B 7 307 110 HOH HOH . 
G 3 HOH B 8 308 82 HOH HOH . 
G 3 HOH B 9 309 17 HOH HOH . 
G 3 HOH B 10 310 106 HOH HOH . 
G 3 HOH B 11 311 12 HOH HOH . 
G 3 HOH B 12 312 44 HOH HOH . 
G 3 HOH B 13 313 70 HOH HOH . 
G 3 HOH B 14 314 39 HOH HOH . 
G 3 HOH B 15 315 24 HOH HOH . 
G 3 HOH B 16 316 34 HOH HOH . 
G 3 HOH B 17 317 18 HOH HOH . 
G 3 HOH B 18 318 2 HOH HOH . 
G 3 HOH B 19 319 23 HOH HOH . 
G 3 HOH B 20 320 86 HOH HOH . 
G 3 HOH B 21 321 68 HOH HOH . 
G 3 HOH B 22 322 1 HOH HOH . 
G 3 HOH B 23 323 75 HOH HOH . 
G 3 HOH B 24 324 105 HOH HOH . 
G 3 HOH B 25 325 27 HOH HOH . 
G 3 HOH B 26 326 16 HOH HOH . 
G 3 HOH B 27 327 65 HOH HOH . 
G 3 HOH B 28 328 64 HOH HOH . 
G 3 HOH B 29 329 31 HOH HOH . 
G 3 HOH B 30 330 15 HOH HOH . 
G 3 HOH B 31 331 41 HOH HOH . 
G 3 HOH B 32 332 30 HOH HOH . 
G 3 HOH B 33 333 7 HOH HOH . 
G 3 HOH B 34 334 71 HOH HOH . 
G 3 HOH B 35 335 96 HOH HOH . 
G 3 HOH B 36 336 51 HOH HOH . 
G 3 HOH B 37 337 107 HOH HOH . 
G 3 HOH B 38 338 50 HOH HOH . 
G 3 HOH B 39 339 72 HOH HOH . 
G 3 HOH B 40 340 103 HOH HOH . 
G 3 HOH B 41 341 59 HOH HOH . 
G 3 HOH B 42 342 93 HOH HOH . 
G 3 HOH B 43 343 63 HOH HOH . 
G 3 HOH B 44 344 81 HOH HOH . 
G 3 HOH B 45 345 83 HOH HOH . 
G 3 HOH B 46 346 43 HOH HOH . 
G 3 HOH B 47 347 114 HOH HOH . 
G 3 HOH B 48 348 46 HOH HOH . 
G 3 HOH B 49 349 11 HOH HOH . 
G 3 HOH B 50 350 36 HOH HOH . 
G 3 HOH B 51 351 53 HOH HOH . 
G 3 HOH B 52 352 123 HOH HOH . 
G 3 HOH B 53 353 113 HOH HOH . 
G 3 HOH B 54 354 111 HOH HOH . 
G 3 HOH B 55 355 115 HOH HOH . 
G 3 HOH B 56 356 78 HOH HOH . 
G 3 HOH B 57 357 122 HOH HOH . 
G 3 HOH B 58 358 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . E 2 -8.467 26.644 16.312 1 55.9 ? C1 MAN 201 B 1 
HETATM 2 C C2 MAN . . . E 2 -7.415 25.492 16.129 1 54.31 ? C2 MAN 201 B 1 
HETATM 3 C C3 MAN . . . E 2 -6.627 25.652 14.818 1 54.92 ? C3 MAN 201 B 1 
HETATM 4 C C4 MAN . . . E 2 -7.595 25.894 13.626 1 41.57 ? C4 MAN 201 B 1 
HETATM 5 C C5 MAN . . . E 2 -8.508 27.128 13.913 1 44.57 ? C5 MAN 201 B 1 
HETATM 6 C C6 MAN . . . E 2 -9.515 27.378 12.808 1 41.24 ? C6 MAN 201 B 1 
HETATM 7 O O1 MAN . . . E 2 -7.758 27.786 16.795 1 59.8 ? O1 MAN 201 B 1 
HETATM 8 O O2 MAN . . . E 2 -8.047 24.212 16.041 1 51.94 ? O2 MAN 201 B 1 
HETATM 9 O O3 MAN . . . E 2 -5.754 24.528 14.574 1 43.05 ? O3 MAN 201 B 1 
HETATM 10 O O4 MAN . . . E 2 -6.856 26.122 12.453 1 47.74 ? O4 MAN 201 B 1 
HETATM 11 O O5 MAN . . . E 2 -9.253 26.929 15.15 1 48.82 ? O5 MAN 201 B 1 
HETATM 12 O O6 MAN . . . E 2 -9.915 26.105 12.298 1 39.96 ? O6 MAN 201 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#