data_7RKP # _model_server_result.job_id L6nwXIdHQKKl5W7BrQPIVw _model_server_result.datetime_utc '2024-10-19 11:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RKP # _exptl.entry_id 7RKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RKP _cell.length_a 89.69 _cell.length_b 89.69 _cell.length_c 133.156 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.69 89.69 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 89.69 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.69 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 C O4 5Y1 . A 5Y1 402 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 C O5 5Y1 . A 5Y1 402 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 C O1 5Y1 . A 5Y1 402 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc10 C O4 5Y1 . A 5Y1 402 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc11 E MN MN . A MN 404 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc12 E MN MN . A MN 404 1_555 I O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 334 n n C21 N02 QQ4 sing 335 n n C20 C19 QQ4 sing 336 n n C19 C42 QQ4 sing 337 n n N02 C12 QQ4 sing 338 n n N02 C42 QQ4 sing 339 n n C12 C11 QQ4 sing 340 n n C42 O05 QQ4 doub 341 n n C38 C41 QQ4 sing 342 n n C38 N07 QQ4 sing 343 n n C41 C40 QQ4 sing 344 n n C10 C09 QQ4 sing 345 n n C11 C01 QQ4 sing 346 n n C40 C39 QQ4 sing 347 n n N07 C09 QQ4 sing 348 n n N07 C39 QQ4 sing 349 n n C01 C02 QQ4 sing 350 n n C01 N03 QQ4 sing 351 n n C08 C09 QQ4 sing 352 n n C08 C07 QQ4 sing 353 n n C02 C03 QQ4 sing 354 n n C39 O07 QQ4 doub 355 n n C26 C27 QQ4 sing 356 n n C26 N04 QQ4 sing 357 n n C22 N03 QQ4 sing 358 n n C22 C25 QQ4 sing 359 n n N03 C23 QQ4 sing 360 n n C06 C07 QQ4 sing 361 n n C06 C05 QQ4 sing 362 n n C07 N06 QQ4 sing 363 n n C27 C28 QQ4 sing 364 n n C03 N04 QQ4 sing 365 n n C03 C04 QQ4 sing 366 n n C25 C24 QQ4 sing 367 n n N04 C29 QQ4 sing 368 n n C04 C05 QQ4 sing 369 n n O04 C30 QQ4 doub 370 n n C23 O02 QQ4 doub 371 n n C23 C24 QQ4 sing 372 n n C05 N05 QQ4 sing 373 n n N06 C34 QQ4 sing 374 n n N06 C37 QQ4 sing 375 n n C34 C35 QQ4 sing 376 n n C28 C29 QQ4 sing 377 n n C29 O03 QQ4 doub 378 n n C30 N05 QQ4 sing 379 n n C30 C31 QQ4 sing 380 n n N05 C33 QQ4 sing 381 n n C37 O06 QQ4 doub 382 n n C37 C36 QQ4 sing 383 n n C35 C36 QQ4 sing 384 n n C31 C32 QQ4 sing 385 n n C33 C32 QQ4 sing 386 n n C12 H1 QQ4 sing 387 n n C12 H2 QQ4 sing 388 n n C11 H3 QQ4 sing 389 n n C11 H4 QQ4 sing 390 n n C10 H5 QQ4 sing 391 n n C10 H6 QQ4 sing 392 n n C10 H7 QQ4 sing 393 n n C01 H8 QQ4 sing 394 n n C02 H9 QQ4 sing 395 n n C02 H10 QQ4 sing 396 n n C03 H11 QQ4 sing 397 n n C04 H12 QQ4 sing 398 n n C04 H13 QQ4 sing 399 n n C05 H14 QQ4 sing 400 n n C06 H15 QQ4 sing 401 n n C06 H16 QQ4 sing 402 n n C07 H17 QQ4 sing 403 n n C08 H18 QQ4 sing 404 n n C08 H19 QQ4 sing 405 n n C09 H20 QQ4 sing 406 n n C19 H21 QQ4 sing 407 n n C19 H22 QQ4 sing 408 n n C20 H23 QQ4 sing 409 n n C20 H24 QQ4 sing 410 n n C21 H25 QQ4 sing 411 n n C21 H26 QQ4 sing 412 n n C22 H27 QQ4 sing 413 n n C22 H28 QQ4 sing 414 n n C24 H29 QQ4 sing 415 n n C24 H30 QQ4 sing 416 n n C25 H31 QQ4 sing 417 n n C25 H32 QQ4 sing 418 n n C26 H33 QQ4 sing 419 n n C26 H34 QQ4 sing 420 n n C27 H35 QQ4 sing 421 n n C27 H36 QQ4 sing 422 n n C28 H37 QQ4 sing 423 n n C28 H38 QQ4 sing 424 n n C31 H39 QQ4 sing 425 n n C31 H40 QQ4 sing 426 n n C32 H41 QQ4 sing 427 n n C32 H42 QQ4 sing 428 n n C33 H43 QQ4 sing 429 n n C33 H44 QQ4 sing 430 n n C34 H45 QQ4 sing 431 n n C34 H46 QQ4 sing 432 n n C35 H47 QQ4 sing 433 n n C35 H48 QQ4 sing 434 n n C36 H49 QQ4 sing 435 n n C36 H50 QQ4 sing 436 n n C38 H51 QQ4 sing 437 n n C38 H52 QQ4 sing 438 n n C40 H53 QQ4 sing 439 n n C40 H54 QQ4 sing 440 n n C41 H55 QQ4 sing 441 n n C41 H56 QQ4 sing 442 n n # _atom_sites.entry_id 7RKP _atom_sites.fract_transf_matrix[1][1] 0.01115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QQ4 A 1 401 401 QQ4 PVP . C 3 5Y1 A 1 402 402 5Y1 C21 . D 4 MN A 1 403 301 MN MN . E 4 MN A 1 404 302 MN MN . F 5 SO4 A 1 405 1 SO4 SO4 . G 5 SO4 A 1 406 2 SO4 SO4 . H 5 SO4 A 1 407 3 SO4 SO4 . I 6 HOH A 1 501 5 HOH HOH . I 6 HOH A 2 502 3 HOH HOH . I 6 HOH A 3 503 1 HOH HOH . I 6 HOH A 4 504 2 HOH HOH . I 6 HOH A 5 505 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 QQ4 . . . B 2 34.625 41.36 -9.555 1 115.07 ? C11 QQ4 401 A 1 HETATM 2 C C10 QQ4 . . . B 2 31.355 49.074 -11.859 1 104.65 ? C10 QQ4 401 A 1 HETATM 3 C C01 QQ4 . . . B 2 34.293 41.819 -10.971 1 105.31 ? C01 QQ4 401 A 1 HETATM 4 C C02 QQ4 . . . B 2 32.802 41.586 -11.24 1 105.31 ? C02 QQ4 401 A 1 HETATM 5 C C03 QQ4 . . . B 2 32.403 42.032 -12.652 1 100.81 ? C03 QQ4 401 A 1 HETATM 6 C C04 QQ4 . . . B 2 31.019 42.706 -12.64 1 96.11 ? C04 QQ4 401 A 1 HETATM 7 C C05 QQ4 . . . B 2 31.019 44.217 -12.946 1 96.67 ? C05 QQ4 401 A 1 HETATM 8 C C06 QQ4 . . . B 2 30.805 44.991 -11.638 1 105.94 ? C06 QQ4 401 A 1 HETATM 9 C C07 QQ4 . . . B 2 30.423 46.472 -11.773 1 110.74 ? C07 QQ4 401 A 1 HETATM 10 C C08 QQ4 . . . B 2 30.671 47.107 -10.4 1 105.86 ? C08 QQ4 401 A 1 HETATM 11 C C09 QQ4 . . . B 2 31.04 48.599 -10.439 1 102.48 ? C09 QQ4 401 A 1 HETATM 12 C C22 QQ4 . . . B 2 36.012 41.744 -12.902 1 105.89 ? C22 QQ4 401 A 1 HETATM 13 C C23 QQ4 . . . B 2 35.256 39.651 -12.073 1 101.94 ? C23 QQ4 401 A 1 HETATM 14 C C24 QQ4 . . . B 2 36.257 39.368 -13.196 1 106.59 ? C24 QQ4 401 A 1 HETATM 15 C C25 QQ4 . . . B 2 37.012 40.679 -13.332 1 108.36 ? C25 QQ4 401 A 1 HETATM 16 C C26 QQ4 . . . B 2 33.002 40.886 -14.872 1 95.18 ? C26 QQ4 401 A 1 HETATM 17 C C27 QQ4 . . . B 2 33.162 39.417 -15.271 1 91.98 ? C27 QQ4 401 A 1 HETATM 18 C C28 QQ4 . . . B 2 32.048 38.701 -14.515 1 92.17 ? C28 QQ4 401 A 1 HETATM 19 C C29 QQ4 . . . B 2 31.807 39.581 -13.299 1 94.51 ? C29 QQ4 401 A 1 HETATM 20 C C30 QQ4 . . . B 2 33.512 45.092 -13.092 1 114.19 ? C30 QQ4 401 A 1 HETATM 21 C C31 QQ4 . . . B 2 34.423 45.449 -14.25 1 121.52 ? C31 QQ4 401 A 1 HETATM 22 C C32 QQ4 . . . B 2 33.473 45.706 -15.388 1 119.57 ? C32 QQ4 401 A 1 HETATM 23 C C33 QQ4 . . . B 2 32.319 44.746 -15.122 1 111.16 ? C33 QQ4 401 A 1 HETATM 24 C C34 QQ4 . . . B 2 27.87 46.069 -11.328 1 82.89 ? C34 QQ4 401 A 1 HETATM 25 C C35 QQ4 . . . B 2 26.617 46.331 -12.173 1 74.17 ? C35 QQ4 401 A 1 HETATM 26 C C36 QQ4 . . . B 2 26.966 47.429 -13.119 1 78.16 ? C36 QQ4 401 A 1 HETATM 27 C C37 QQ4 . . . B 2 28.466 47.485 -13.161 1 92.28 ? C37 QQ4 401 A 1 HETATM 28 C C38 QQ4 . . . B 2 28.592 49.468 -10.367 1 102.99 ? C38 QQ4 401 A 1 HETATM 29 C C39 QQ4 . . . B 2 30.083 50.272 -8.71 1 110.15 ? C39 QQ4 401 A 1 HETATM 30 C C40 QQ4 . . . B 2 28.727 50.921 -8.462 1 105.95 ? C40 QQ4 401 A 1 HETATM 31 C C41 QQ4 . . . B 2 27.999 50.744 -9.777 1 103.44 ? C41 QQ4 401 A 1 HETATM 32 N N03 QQ4 . . . B 2 35.135 41.104 -11.926 1 103.47 ? N03 QQ4 401 A 1 HETATM 33 N N04 QQ4 . . . B 2 32.398 40.885 -13.547 1 100.01 ? N04 QQ4 401 A 1 HETATM 34 N N05 QQ4 . . . B 2 32.221 44.656 -13.655 1 108.2 ? N05 QQ4 401 A 1 HETATM 35 N N06 QQ4 . . . B 2 29.014 46.658 -12.079 1 98.87 ? N06 QQ4 401 A 1 HETATM 36 N N07 QQ4 . . . B 2 29.967 49.4 -9.874 1 104.02 ? N07 QQ4 401 A 1 HETATM 37 O O02 QQ4 . . . B 2 34.685 38.827 -11.44 1 96.2 ? O02 QQ4 401 A 1 HETATM 38 O O03 QQ4 . . . B 2 31.233 39.231 -12.323 1 83.88 ? O03 QQ4 401 A 1 HETATM 39 O O04 QQ4 . . . B 2 33.812 45.151 -11.945 1 114.32 ? O04 QQ4 401 A 1 HETATM 40 O O06 QQ4 . . . B 2 29.102 48.105 -13.946 1 93.54 ? O06 QQ4 401 A 1 HETATM 41 O O07 QQ4 . . . B 2 31.061 50.451 -8.071 1 104.78 ? O07 QQ4 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #