data_7RKT
#
_model_server_result.job_id            9rCmfqI9h7XUig8cIAQZHw 
_model_server_result.datetime_utc      '2024-10-13 05:21:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7RKT 
#
_exptl.entry_id    7RKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.22 
_cell.angle_gamma         90 
_cell.entry_id            7RKT 
_cell.length_a            121.7 
_cell.length_b            55.19 
_cell.length_c            72.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N2 5UR . A 5UR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 185 n n 
CHA C4D HEM doub 186 n n 
CHA HHA HEM sing 187 n n 
CHB C4A HEM sing 188 n n 
CHB C1B HEM doub 189 n n 
CHB HHB HEM sing 190 n n 
CHC C4B HEM sing 191 n n 
CHC C1C HEM doub 192 n n 
CHC HHC HEM sing 193 n n 
CHD C4C HEM doub 194 n n 
CHD C1D HEM sing 195 n n 
CHD HHD HEM sing 196 n n 
C1A C2A HEM doub 197 n y 
C1A NA HEM sing 198 n y 
C2A C3A HEM sing 199 n y 
C2A CAA HEM sing 200 n n 
C3A C4A HEM doub 201 n y 
C3A CMA HEM sing 202 n n 
C4A NA HEM sing 203 n y 
CMA HMA HEM sing 204 n n 
CMA HMAA HEM sing 205 n n 
CMA HMAB HEM sing 206 n n 
CAA CBA HEM sing 207 n n 
CAA HAA HEM sing 208 n n 
CAA HAAA HEM sing 209 n n 
CBA CGA HEM sing 210 n n 
CBA HBA HEM sing 211 n n 
CBA HBAA HEM sing 212 n n 
CGA O1A HEM doub 213 n n 
CGA O2A HEM sing 214 n n 
C1B C2B HEM sing 215 n n 
C1B NB HEM sing 216 n n 
C2B C3B HEM doub 217 n n 
C2B CMB HEM sing 218 n n 
C3B C4B HEM sing 219 n n 
C3B CAB HEM sing 220 n n 
C4B NB HEM doub 221 n n 
CMB HMB HEM sing 222 n n 
CMB HMBA HEM sing 223 n n 
CMB HMBB HEM sing 224 n n 
CAB CBB HEM doub 225 n n 
CAB HAB HEM sing 226 n n 
CBB HBB HEM sing 227 n n 
CBB HBBA HEM sing 228 n n 
C1C C2C HEM sing 229 n y 
C1C NC HEM sing 230 n y 
C2C C3C HEM doub 231 n y 
C2C CMC HEM sing 232 n n 
C3C C4C HEM sing 233 n y 
C3C CAC HEM sing 234 n n 
C4C NC HEM sing 235 n y 
CMC HMC HEM sing 236 n n 
CMC HMCA HEM sing 237 n n 
CMC HMCB HEM sing 238 n n 
CAC CBC HEM doub 239 n n 
CAC HAC HEM sing 240 n n 
CBC HBC HEM sing 241 n n 
CBC HBCA HEM sing 242 n n 
C1D C2D HEM sing 243 n n 
C1D ND HEM doub 244 n n 
C2D C3D HEM doub 245 n n 
C2D CMD HEM sing 246 n n 
C3D C4D HEM sing 247 n n 
C3D CAD HEM sing 248 n n 
C4D ND HEM sing 249 n n 
CMD HMD HEM sing 250 n n 
CMD HMDA HEM sing 251 n n 
CMD HMDB HEM sing 252 n n 
CAD CBD HEM sing 253 n n 
CAD HAD HEM sing 254 n n 
CAD HADA HEM sing 255 n n 
CBD CGD HEM sing 256 n n 
CBD HBD HEM sing 257 n n 
CBD HBDA HEM sing 258 n n 
CGD O1D HEM doub 259 n n 
CGD O2D HEM sing 260 n n 
O2A H2A HEM sing 261 n n 
O2D H2D HEM sing 262 n n 
FE NA HEM sing 263 n n 
FE NB HEM sing 264 n n 
FE NC HEM sing 265 n n 
FE ND HEM sing 266 n n 
#
_atom_sites.entry_id                     7RKT 
_atom_sites.fract_transf_matrix[1][1]    0.008217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001482 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 501 HEM HEM . 
C 3 5UR A 1 502 502 5UR L48 . 
D 4 GOL A 1 503 1 GOL GOL . 
E 4 GOL A 1 504 2 GOL GOL . 
F 5 HOH A 1 601 12 HOH HOH . 
F 5 HOH A 2 602 125 HOH HOH . 
F 5 HOH A 3 603 9 HOH HOH . 
F 5 HOH A 4 604 95 HOH HOH . 
F 5 HOH A 5 605 14 HOH HOH . 
F 5 HOH A 6 606 77 HOH HOH . 
F 5 HOH A 7 607 50 HOH HOH . 
F 5 HOH A 8 608 22 HOH HOH . 
F 5 HOH A 9 609 2 HOH HOH . 
F 5 HOH A 10 610 36 HOH HOH . 
F 5 HOH A 11 611 53 HOH HOH . 
F 5 HOH A 12 612 130 HOH HOH . 
F 5 HOH A 13 613 99 HOH HOH . 
F 5 HOH A 14 614 42 HOH HOH . 
F 5 HOH A 15 615 87 HOH HOH . 
F 5 HOH A 16 616 16 HOH HOH . 
F 5 HOH A 17 617 1 HOH HOH . 
F 5 HOH A 18 618 136 HOH HOH . 
F 5 HOH A 19 619 10 HOH HOH . 
F 5 HOH A 20 620 98 HOH HOH . 
F 5 HOH A 21 621 129 HOH HOH . 
F 5 HOH A 22 622 17 HOH HOH . 
F 5 HOH A 23 623 31 HOH HOH . 
F 5 HOH A 24 624 126 HOH HOH . 
F 5 HOH A 25 625 113 HOH HOH . 
F 5 HOH A 26 626 135 HOH HOH . 
F 5 HOH A 27 627 21 HOH HOH . 
F 5 HOH A 28 628 134 HOH HOH . 
F 5 HOH A 29 629 49 HOH HOH . 
F 5 HOH A 30 630 51 HOH HOH . 
F 5 HOH A 31 631 131 HOH HOH . 
F 5 HOH A 32 632 139 HOH HOH . 
F 5 HOH A 33 633 124 HOH HOH . 
F 5 HOH A 34 634 138 HOH HOH . 
F 5 HOH A 35 635 132 HOH HOH . 
F 5 HOH A 36 636 137 HOH HOH . 
F 5 HOH A 37 637 71 HOH HOH . 
F 5 HOH A 38 638 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 17.074 -5.556 23.941 1 49.42 ? CHA HEM 501 A 1 
HETATM 2 C CHB HEM . . . B 2 16.061 -1.168 22.193 1 52.26 ? CHB HEM 501 A 1 
HETATM 3 C CHC HEM . . . B 2 20.802 -0.208 21.916 1 46.85 ? CHC HEM 501 A 1 
HETATM 4 C CHD HEM . . . B 2 21.732 -4.717 23.122 1 51.03 ? CHD HEM 501 A 1 
HETATM 5 C C1A HEM . . . B 2 16.42 -4.427 23.529 1 47.8 ? C1A HEM 501 A 1 
HETATM 6 C C2A HEM . . . B 2 15.009 -4.287 23.53 1 61.99 ? C2A HEM 501 A 1 
HETATM 7 C C3A HEM . . . B 2 14.726 -3.061 23.027 1 59.02 ? C3A HEM 501 A 1 
HETATM 8 C C4A HEM . . . B 2 15.957 -2.447 22.709 1 50.2 ? C4A HEM 501 A 1 
HETATM 9 C CMA HEM . . . B 2 13.351 -2.472 22.824 1 61.54 ? CMA HEM 501 A 1 
HETATM 10 C CAA HEM . . . B 2 14.016 -5.316 23.97 1 62.28 ? CAA HEM 501 A 1 
HETATM 11 C CBA HEM . . . B 2 13.898 -6.427 22.886 1 72.29 ? CBA HEM 501 A 1 
HETATM 12 C CGA HEM . . . B 2 12.865 -7.517 23.236 1 69.69 ? CGA HEM 501 A 1 
HETATM 13 O O1A HEM . . . B 2 12.587 -8.455 22.42 1 64.05 ? O1A HEM 501 A 1 
HETATM 14 O O2A HEM . . . B 2 12.251 -7.501 24.336 1 73.55 ? O2A HEM 501 A 1 
HETATM 15 C C1B HEM . . . B 2 17.266 -0.529 21.963 1 55.01 ? C1B HEM 501 A 1 
HETATM 16 C C2B HEM . . . B 2 17.342 0.82 21.542 1 53.27 ? C2B HEM 501 A 1 
HETATM 17 C C3B HEM . . . B 2 18.679 1.118 21.424 1 52.45 ? C3B HEM 501 A 1 
HETATM 18 C C4B HEM . . . B 2 19.409 -0.104 21.849 1 55.59 ? C4B HEM 501 A 1 
HETATM 19 C CMB HEM . . . B 2 16.188 1.727 21.215 1 53.99 ? CMB HEM 501 A 1 
HETATM 20 C CAB HEM . . . B 2 19.339 2.393 21.103 1 55.34 ? CAB HEM 501 A 1 
HETATM 21 C CBB HEM . . . B 2 18.769 3.581 21.26 1 61.96 ? CBB HEM 501 A 1 
HETATM 22 C C1C HEM . . . B 2 21.48 -1.369 22.23 1 50.8 ? C1C HEM 501 A 1 
HETATM 23 C C2C HEM . . . B 2 22.869 -1.533 22.119 1 58.12 ? C2C HEM 501 A 1 
HETATM 24 C C3C HEM . . . B 2 23.151 -2.848 22.484 1 56.37 ? C3C HEM 501 A 1 
HETATM 25 C C4C HEM . . . B 2 21.884 -3.439 22.771 1 48.57 ? C4C HEM 501 A 1 
HETATM 26 C CMC HEM . . . B 2 23.795 -0.404 21.761 1 56.46 ? CMC HEM 501 A 1 
HETATM 27 C CAC HEM . . . B 2 24.413 -3.576 22.617 1 53.9 ? CAC HEM 501 A 1 
HETATM 28 C CBC HEM . . . B 2 25.628 -3.026 22.536 1 66.53 ? CBC HEM 501 A 1 
HETATM 29 C C1D HEM . . . B 2 20.519 -5.259 23.436 1 60.44 ? C1D HEM 501 A 1 
HETATM 30 C C2D HEM . . . B 2 20.492 -6.618 23.91 1 57.06 ? C2D HEM 501 A 1 
HETATM 31 C C3D HEM . . . B 2 19.208 -6.863 24.167 1 58.78 ? C3D HEM 501 A 1 
HETATM 32 C C4D HEM . . . B 2 18.46 -5.655 23.824 1 49.58 ? C4D HEM 501 A 1 
HETATM 33 C CMD HEM . . . B 2 21.625 -7.609 24.093 1 60.38 ? CMD HEM 501 A 1 
HETATM 34 C CAD HEM . . . B 2 18.712 -8.219 24.611 1 66.3 ? CAD HEM 501 A 1 
HETATM 35 C CBD HEM . . . B 2 18.294 -8.24 26.063 1 81.27 ? CBD HEM 501 A 1 
HETATM 36 C CGD HEM . . . B 2 18.117 -9.708 26.466 1 91.31 ? CGD HEM 501 A 1 
HETATM 37 O O1D HEM . . . B 2 18.648 -10.119 27.55 1 76.66 ? O1D HEM 501 A 1 
HETATM 38 O O2D HEM . . . B 2 17.454 -10.493 25.716 1 65.65 ? O2D HEM 501 A 1 
HETATM 39 N NA HEM . . . B 2 16.954 -3.278 23.032 1 48.12 ? NA HEM 501 A 1 
HETATM 40 N NB HEM . . . B 2 18.502 -1.044 22.145 1 47.58 ? NB HEM 501 A 1 
HETATM 41 N NC HEM . . . B 2 20.938 -2.556 22.555 1 42.67 ? NC HEM 501 A 1 
HETATM 42 N ND HEM . . . B 2 19.298 -4.679 23.403 1 48.27 ? ND HEM 501 A 1 
HETATM 43 FE FE HEM . . . B 2 18.921 -2.932 22.815 1 50.06 ? FE HEM 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#