data_7RKT # _model_server_result.job_id HgD4ygRFtAYpRMVXDjeD5Q _model_server_result.datetime_utc '2024-11-30 04:07:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7RKT # _exptl.entry_id 7RKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl 3-(trifluoromethyl)benzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.22 _cell.angle_gamma 90 _cell.entry_id 7RKT _cell.length_a 121.7 _cell.length_b 55.19 _cell.length_c 72.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N2 5UR . A 5UR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C19 H13 Cl2 F3 N2 O2' _chem_comp.formula_weight 429.22 _chem_comp.id 5UR _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl 3-(trifluoromethyl)benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 CG 5UR sing 1 n n CD2 CG 5UR doub 2 n y CD2 CE2 5UR sing 3 n y CL2 CE2 5UR sing 4 n n CG CD1 5UR sing 5 n y CE2 C4 5UR doub 6 n y CD1 CE1 5UR doub 7 n y C4 CE1 5UR sing 8 n y C4 C 5UR sing 9 n n C CA 5UR sing 10 n n C O 5UR sing 11 n n OH C8 5UR doub 12 n n CA N 5UR sing 13 n n O C8 5UR sing 14 n n C8 C9 5UR sing 15 n n C17 N 5UR sing 16 n y C17 C18 5UR doub 17 n y N C19 5UR sing 18 n y C9 C14 5UR doub 19 n y C9 C10 5UR sing 20 n y C18 N2 5UR sing 21 n y C14 C13 5UR sing 22 n y C10 C11 5UR doub 23 n y C19 N2 5UR doub 24 n y F1 C15 5UR sing 25 n n C13 C15 5UR sing 26 n n C13 C12 5UR doub 27 n y F3 C15 5UR sing 28 n n C15 F2 5UR sing 29 n n C11 C12 5UR sing 30 n y C10 H1 5UR sing 31 n n C11 H2 5UR sing 32 n n C14 H3 5UR sing 33 n n C17 H4 5UR sing 34 n n C18 H5 5UR sing 35 n n CD1 H6 5UR sing 36 n n CE1 H7 5UR sing 37 n n CD2 H8 5UR sing 38 n n C H9 5UR sing 39 n n C12 H10 5UR sing 40 n n CA H11 5UR sing 41 n n CA H12 5UR sing 42 n n C19 H13 5UR sing 43 n n # _atom_sites.entry_id 7RKT _atom_sites.fract_transf_matrix[1][1] 0.008217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 5UR A 1 502 502 5UR L48 . D 4 GOL A 1 503 1 GOL GOL . E 4 GOL A 1 504 2 GOL GOL . F 5 HOH A 1 601 12 HOH HOH . F 5 HOH A 2 602 125 HOH HOH . F 5 HOH A 3 603 9 HOH HOH . F 5 HOH A 4 604 95 HOH HOH . F 5 HOH A 5 605 14 HOH HOH . F 5 HOH A 6 606 77 HOH HOH . F 5 HOH A 7 607 50 HOH HOH . F 5 HOH A 8 608 22 HOH HOH . F 5 HOH A 9 609 2 HOH HOH . F 5 HOH A 10 610 36 HOH HOH . F 5 HOH A 11 611 53 HOH HOH . F 5 HOH A 12 612 130 HOH HOH . F 5 HOH A 13 613 99 HOH HOH . F 5 HOH A 14 614 42 HOH HOH . F 5 HOH A 15 615 87 HOH HOH . F 5 HOH A 16 616 16 HOH HOH . F 5 HOH A 17 617 1 HOH HOH . F 5 HOH A 18 618 136 HOH HOH . F 5 HOH A 19 619 10 HOH HOH . F 5 HOH A 20 620 98 HOH HOH . F 5 HOH A 21 621 129 HOH HOH . F 5 HOH A 22 622 17 HOH HOH . F 5 HOH A 23 623 31 HOH HOH . F 5 HOH A 24 624 126 HOH HOH . F 5 HOH A 25 625 113 HOH HOH . F 5 HOH A 26 626 135 HOH HOH . F 5 HOH A 27 627 21 HOH HOH . F 5 HOH A 28 628 134 HOH HOH . F 5 HOH A 29 629 49 HOH HOH . F 5 HOH A 30 630 51 HOH HOH . F 5 HOH A 31 631 131 HOH HOH . F 5 HOH A 32 632 139 HOH HOH . F 5 HOH A 33 633 124 HOH HOH . F 5 HOH A 34 634 138 HOH HOH . F 5 HOH A 35 635 132 HOH HOH . F 5 HOH A 36 636 137 HOH HOH . F 5 HOH A 37 637 71 HOH HOH . F 5 HOH A 38 638 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5UR . . . C 3 17.581 -7.599 16.866 1 63.65 ? C4 5UR 502 A 1 HETATM 2 C C8 5UR . . . C 3 20.405 -7.352 18.539 1 60.55 ? C8 5UR 502 A 1 HETATM 3 C C9 5UR . . . C 3 20.876 -8.196 19.651 1 62.31 ? C9 5UR 502 A 1 HETATM 4 C C10 5UR . . . C 3 19.994 -9 20.348 1 59.66 ? C10 5UR 502 A 1 HETATM 5 C C11 5UR . . . C 3 20.475 -9.845 21.339 1 60.97 ? C11 5UR 502 A 1 HETATM 6 C C14 5UR . . . C 3 22.23 -8.253 19.978 1 59.35 ? C14 5UR 502 A 1 HETATM 7 C C15 5UR . . . C 3 24.227 -9.148 21.331 1 76.09 ? C15 5UR 502 A 1 HETATM 8 C C17 5UR . . . C 3 18.819 -3.643 18.766 1 55.64 ? C17 5UR 502 A 1 HETATM 9 C C18 5UR . . . C 3 19.183 -3.025 19.943 1 57.71 ? C18 5UR 502 A 1 HETATM 10 CL CL1 5UR . . . C 3 14.975 -10.327 14.4 1 93.09 ? CL1 5UR 502 A 1 HETATM 11 C CG 5UR . . . C 3 15.976 -9.283 15.342 1 86.15 ? CG 5UR 502 A 1 HETATM 12 C CD1 5UR . . . C 3 16.335 -9.647 16.631 1 78.44 ? CD1 5UR 502 A 1 HETATM 13 C CE1 5UR . . . C 3 17.13 -8.805 17.389 1 77.47 ? CE1 5UR 502 A 1 HETATM 14 C CE2 5UR . . . C 3 17.177 -7.268 15.566 1 83.58 ? CE2 5UR 502 A 1 HETATM 15 C CD2 5UR . . . C 3 16.389 -8.097 14.784 1 73.66 ? CD2 5UR 502 A 1 HETATM 16 CL CL2 5UR . . . C 3 17.673 -5.772 14.838 1 102.55 ? CL2 5UR 502 A 1 HETATM 17 C C 5UR . . . C 3 18.39 -6.642 17.643 1 57.16 ? C 5UR 502 A 1 HETATM 18 O O 5UR . . . C 3 19.035 -7.359 18.476 1 61.17 ? O 5UR 502 A 1 HETATM 19 O OH 5UR . . . C 3 21.176 -6.859 17.729 1 61.09 ? OH 5UR 502 A 1 HETATM 20 C C12 5UR . . . C 3 21.842 -9.895 21.632 1 58.34 ? C12 5UR 502 A 1 HETATM 21 C C13 5UR . . . C 3 22.74 -9.088 20.967 1 60.19 ? C13 5UR 502 A 1 HETATM 22 F F1 5UR . . . C 3 25.025 -8.191 20.776 1 70.47 ? F1 5UR 502 A 1 HETATM 23 F F2 5UR . . . C 3 24.454 -9.023 22.657 1 75.06 ? F2 5UR 502 A 1 HETATM 24 F F3 5UR . . . C 3 24.87 -10.308 21.038 1 70.45 ? F3 5UR 502 A 1 HETATM 25 C CA 5UR . . . C 3 17.383 -5.723 18.245 1 52.52 ? CA 5UR 502 A 1 HETATM 26 N N 5UR . . . C 3 18.024 -4.704 19.127 1 52.43 ? N 5UR 502 A 1 HETATM 27 N N2 5UR . . . C 3 18.623 -3.675 21.037 1 57.54 ? N2 5UR 502 A 1 HETATM 28 C C19 5UR . . . C 3 17.957 -4.668 20.485 1 54 ? C19 5UR 502 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #