data_7RKT
#
_model_server_result.job_id            YJQlfT9o18b6QEMz4E9Rmw 
_model_server_result.datetime_utc      '2024-10-13 05:21:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    7RKT 
#
_exptl.entry_id    7RKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.22 
_cell.angle_gamma         90 
_cell.entry_id            7RKT 
_cell.length_a            121.7 
_cell.length_b            55.19 
_cell.length_c            72.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N2 5UR . A 5UR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 172 n n 
C1 C2 GOL sing 173 n n 
C1 H11 GOL sing 174 n n 
C1 H12 GOL sing 175 n n 
O1 HO1 GOL sing 176 n n 
C2 O2 GOL sing 177 n n 
C2 C3 GOL sing 178 n n 
C2 H2 GOL sing 179 n n 
O2 HO2 GOL sing 180 n n 
C3 O3 GOL sing 181 n n 
C3 H31 GOL sing 182 n n 
C3 H32 GOL sing 183 n n 
O3 HO3 GOL sing 184 n n 
#
_atom_sites.entry_id                     7RKT 
_atom_sites.fract_transf_matrix[1][1]    0.008217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001482 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 501 HEM HEM . 
C 3 5UR A 1 502 502 5UR L48 . 
D 4 GOL A 1 503 1 GOL GOL . 
E 4 GOL A 1 504 2 GOL GOL . 
F 5 HOH A 1 601 12 HOH HOH . 
F 5 HOH A 2 602 125 HOH HOH . 
F 5 HOH A 3 603 9 HOH HOH . 
F 5 HOH A 4 604 95 HOH HOH . 
F 5 HOH A 5 605 14 HOH HOH . 
F 5 HOH A 6 606 77 HOH HOH . 
F 5 HOH A 7 607 50 HOH HOH . 
F 5 HOH A 8 608 22 HOH HOH . 
F 5 HOH A 9 609 2 HOH HOH . 
F 5 HOH A 10 610 36 HOH HOH . 
F 5 HOH A 11 611 53 HOH HOH . 
F 5 HOH A 12 612 130 HOH HOH . 
F 5 HOH A 13 613 99 HOH HOH . 
F 5 HOH A 14 614 42 HOH HOH . 
F 5 HOH A 15 615 87 HOH HOH . 
F 5 HOH A 16 616 16 HOH HOH . 
F 5 HOH A 17 617 1 HOH HOH . 
F 5 HOH A 18 618 136 HOH HOH . 
F 5 HOH A 19 619 10 HOH HOH . 
F 5 HOH A 20 620 98 HOH HOH . 
F 5 HOH A 21 621 129 HOH HOH . 
F 5 HOH A 22 622 17 HOH HOH . 
F 5 HOH A 23 623 31 HOH HOH . 
F 5 HOH A 24 624 126 HOH HOH . 
F 5 HOH A 25 625 113 HOH HOH . 
F 5 HOH A 26 626 135 HOH HOH . 
F 5 HOH A 27 627 21 HOH HOH . 
F 5 HOH A 28 628 134 HOH HOH . 
F 5 HOH A 29 629 49 HOH HOH . 
F 5 HOH A 30 630 51 HOH HOH . 
F 5 HOH A 31 631 131 HOH HOH . 
F 5 HOH A 32 632 139 HOH HOH . 
F 5 HOH A 33 633 124 HOH HOH . 
F 5 HOH A 34 634 138 HOH HOH . 
F 5 HOH A 35 635 132 HOH HOH . 
F 5 HOH A 36 636 137 HOH HOH . 
F 5 HOH A 37 637 71 HOH HOH . 
F 5 HOH A 38 638 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 14.021 -6.869 17.801 1 95.78 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 4 13.457 -6.842 19.128 1 103.64 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 4 12.922 -6.778 16.759 1 94.85 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 4 11.934 -5.958 17.381 1 100.97 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 4 13.39 -6.138 15.447 1 95.96 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 4 12.896 -6.847 14.307 1 97.33 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#