data_7RKW
#
_model_server_result.job_id            c2Yn5AFpVK_a1huCBIGvvQ 
_model_server_result.datetime_utc      '2024-11-30 04:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rkw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    7RKW 
#
_exptl.entry_id    7RKW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.14 
_cell.angle_gamma         90 
_cell.entry_id            7RKW 
_cell.length_a            121.29 
_cell.length_b            55.28 
_cell.length_c            72.06 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7RKW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N2 5TV . A 5TV 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 169 n n 
C1 C2 GOL sing 170 n n 
C1 H11 GOL sing 171 n n 
C1 H12 GOL sing 172 n n 
O1 HO1 GOL sing 173 n n 
C2 O2 GOL sing 174 n n 
C2 C3 GOL sing 175 n n 
C2 H2 GOL sing 176 n n 
O2 HO2 GOL sing 177 n n 
C3 O3 GOL sing 178 n n 
C3 H31 GOL sing 179 n n 
C3 H32 GOL sing 180 n n 
O3 HO3 GOL sing 181 n n 
#
_atom_sites.entry_id                     7RKW 
_atom_sites.fract_transf_matrix[1][1]    0.008245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001474 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014097 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 501 HEM HEM . 
C 3 5TV A 1 502 502 5TV L46 . 
D 4 GOL A 1 503 1 GOL GOL . 
E 5 HOH A 1 601 60 HOH HOH . 
E 5 HOH A 2 602 215 HOH HOH . 
E 5 HOH A 3 603 184 HOH HOH . 
E 5 HOH A 4 604 62 HOH HOH . 
E 5 HOH A 5 605 15 HOH HOH . 
E 5 HOH A 6 606 110 HOH HOH . 
E 5 HOH A 7 607 216 HOH HOH . 
E 5 HOH A 8 608 26 HOH HOH . 
E 5 HOH A 9 609 46 HOH HOH . 
E 5 HOH A 10 610 209 HOH HOH . 
E 5 HOH A 11 611 12 HOH HOH . 
E 5 HOH A 12 612 4 HOH HOH . 
E 5 HOH A 13 613 23 HOH HOH . 
E 5 HOH A 14 614 7 HOH HOH . 
E 5 HOH A 15 615 22 HOH HOH . 
E 5 HOH A 16 616 30 HOH HOH . 
E 5 HOH A 17 617 190 HOH HOH . 
E 5 HOH A 18 618 191 HOH HOH . 
E 5 HOH A 19 619 87 HOH HOH . 
E 5 HOH A 20 620 45 HOH HOH . 
E 5 HOH A 21 621 2 HOH HOH . 
E 5 HOH A 22 622 183 HOH HOH . 
E 5 HOH A 23 623 49 HOH HOH . 
E 5 HOH A 24 624 54 HOH HOH . 
E 5 HOH A 25 625 208 HOH HOH . 
E 5 HOH A 26 626 203 HOH HOH . 
E 5 HOH A 27 627 50 HOH HOH . 
E 5 HOH A 28 628 5 HOH HOH . 
E 5 HOH A 29 629 38 HOH HOH . 
E 5 HOH A 30 630 90 HOH HOH . 
E 5 HOH A 31 631 61 HOH HOH . 
E 5 HOH A 32 632 69 HOH HOH . 
E 5 HOH A 33 633 196 HOH HOH . 
E 5 HOH A 34 634 55 HOH HOH . 
E 5 HOH A 35 635 8 HOH HOH . 
E 5 HOH A 36 636 1 HOH HOH . 
E 5 HOH A 37 637 10 HOH HOH . 
E 5 HOH A 38 638 187 HOH HOH . 
E 5 HOH A 39 639 70 HOH HOH . 
E 5 HOH A 40 640 77 HOH HOH . 
E 5 HOH A 41 641 181 HOH HOH . 
E 5 HOH A 42 642 17 HOH HOH . 
E 5 HOH A 43 643 189 HOH HOH . 
E 5 HOH A 44 644 182 HOH HOH . 
E 5 HOH A 45 645 193 HOH HOH . 
E 5 HOH A 46 646 48 HOH HOH . 
E 5 HOH A 47 647 200 HOH HOH . 
E 5 HOH A 48 648 42 HOH HOH . 
E 5 HOH A 49 649 14 HOH HOH . 
E 5 HOH A 50 650 186 HOH HOH . 
E 5 HOH A 51 651 195 HOH HOH . 
E 5 HOH A 52 652 197 HOH HOH . 
E 5 HOH A 53 653 219 HOH HOH . 
E 5 HOH A 54 654 202 HOH HOH . 
E 5 HOH A 55 655 217 HOH HOH . 
E 5 HOH A 56 656 198 HOH HOH . 
E 5 HOH A 57 657 188 HOH HOH . 
E 5 HOH A 58 658 180 HOH HOH . 
E 5 HOH A 59 659 207 HOH HOH . 
E 5 HOH A 60 660 220 HOH HOH . 
E 5 HOH A 61 661 192 HOH HOH . 
E 5 HOH A 62 662 185 HOH HOH . 
E 5 HOH A 63 663 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 11.231 -7.452 14.752 1 86.63 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 4 11.117 -8.277 13.556 1 86.99 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 4 12.699 -7.17 15.149 1 74.05 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 4 13.112 -5.858 14.771 1 82.56 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 4 13.044 -7.31 16.648 1 73.88 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 4 12.969 -6.121 17.46 1 64.79 ? O3 GOL 503 A 1 
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_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#