data_7RL2 # _model_server_result.job_id wotH-uzXm2qw8KD5KE2xeA _model_server_result.datetime_utc '2024-12-04 18:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7RL2 # _exptl.entry_id 7RL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RL2 _cell.length_a 75 _cell.length_b 143.211 _cell.length_c 163.821 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 435 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.226 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7RL2 _atom_sites.fract_transf_matrix[1][1] 0.013333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 LSN A 1 502 502 LSN LSN . D 3 LSN A 1 503 503 LSN LSN . E 4 K A 1 504 504 K K . F 5 PO4 A 1 505 505 PO4 PO4 . G 6 HOH A 1 601 601 HOH HOH . G 6 HOH A 2 602 602 HOH HOH . G 6 HOH A 3 603 603 HOH HOH . G 6 HOH A 4 604 604 HOH HOH . G 6 HOH A 5 605 605 HOH HOH . G 6 HOH A 6 606 606 HOH HOH . G 6 HOH A 7 607 607 HOH HOH . G 6 HOH A 8 608 608 HOH HOH . G 6 HOH A 9 609 609 HOH HOH . G 6 HOH A 10 610 610 HOH HOH . G 6 HOH A 11 611 611 HOH HOH . G 6 HOH A 12 612 612 HOH HOH . G 6 HOH A 13 613 613 HOH HOH . G 6 HOH A 14 614 614 HOH HOH . G 6 HOH A 15 615 615 HOH HOH . G 6 HOH A 16 616 616 HOH HOH . G 6 HOH A 17 617 617 HOH HOH . G 6 HOH A 18 618 618 HOH HOH . G 6 HOH A 19 619 619 HOH HOH . G 6 HOH A 20 620 620 HOH HOH . G 6 HOH A 21 621 621 HOH HOH . G 6 HOH A 22 622 622 HOH HOH . G 6 HOH A 23 623 623 HOH HOH . G 6 HOH A 24 624 624 HOH HOH . G 6 HOH A 25 625 625 HOH HOH . G 6 HOH A 26 626 626 HOH HOH . G 6 HOH A 27 627 627 HOH HOH . G 6 HOH A 28 628 628 HOH HOH . G 6 HOH A 29 629 629 HOH HOH . G 6 HOH A 30 630 630 HOH HOH . G 6 HOH A 31 631 631 HOH HOH . G 6 HOH A 32 632 632 HOH HOH . G 6 HOH A 33 633 633 HOH HOH . G 6 HOH A 34 634 634 HOH HOH . G 6 HOH A 35 635 635 HOH HOH . G 6 HOH A 36 636 636 HOH HOH . G 6 HOH A 37 637 637 HOH HOH . G 6 HOH A 38 638 638 HOH HOH . G 6 HOH A 39 639 639 HOH HOH . G 6 HOH A 40 640 640 HOH HOH . G 6 HOH A 41 641 641 HOH HOH . G 6 HOH A 42 642 642 HOH HOH . G 6 HOH A 43 643 643 HOH HOH . G 6 HOH A 44 644 644 HOH HOH . G 6 HOH A 45 645 645 HOH HOH . G 6 HOH A 46 646 646 HOH HOH . G 6 HOH A 47 647 647 HOH HOH . G 6 HOH A 48 648 648 HOH HOH . G 6 HOH A 49 649 649 HOH HOH . G 6 HOH A 50 650 650 HOH HOH . G 6 HOH A 51 651 651 HOH HOH . G 6 HOH A 52 652 652 HOH HOH . G 6 HOH A 53 653 653 HOH HOH . G 6 HOH A 54 654 654 HOH HOH . G 6 HOH A 55 655 655 HOH HOH . G 6 HOH A 56 656 656 HOH HOH . G 6 HOH A 57 657 657 HOH HOH . G 6 HOH A 58 658 658 HOH HOH . G 6 HOH A 59 659 659 HOH HOH . G 6 HOH A 60 660 660 HOH HOH . G 6 HOH A 61 661 661 HOH HOH . G 6 HOH A 62 662 662 HOH HOH . G 6 HOH A 63 663 663 HOH HOH . G 6 HOH A 64 664 664 HOH HOH . G 6 HOH A 65 665 665 HOH HOH . G 6 HOH A 66 666 666 HOH HOH . G 6 HOH A 67 667 667 HOH HOH . G 6 HOH A 68 668 668 HOH HOH . G 6 HOH A 69 669 669 HOH HOH . G 6 HOH A 70 670 670 HOH HOH . G 6 HOH A 71 671 671 HOH HOH . G 6 HOH A 72 672 672 HOH HOH . G 6 HOH A 73 673 673 HOH HOH . G 6 HOH A 74 674 674 HOH HOH . G 6 HOH A 75 675 675 HOH HOH . G 6 HOH A 76 676 676 HOH HOH . G 6 HOH A 77 677 677 HOH HOH . G 6 HOH A 78 678 678 HOH HOH . G 6 HOH A 79 679 679 HOH HOH . G 6 HOH A 80 680 680 HOH HOH . G 6 HOH A 81 681 681 HOH HOH . G 6 HOH A 82 682 682 HOH HOH . G 6 HOH A 83 683 683 HOH HOH . G 6 HOH A 84 684 684 HOH HOH . G 6 HOH A 85 685 685 HOH HOH . G 6 HOH A 86 686 686 HOH HOH . G 6 HOH A 87 687 687 HOH HOH . G 6 HOH A 88 688 688 HOH HOH . G 6 HOH A 89 689 689 HOH HOH . G 6 HOH A 90 690 690 HOH HOH . G 6 HOH A 91 691 691 HOH HOH . G 6 HOH A 92 692 692 HOH HOH . G 6 HOH A 93 693 693 HOH HOH . G 6 HOH A 94 694 694 HOH HOH . G 6 HOH A 95 695 695 HOH HOH . G 6 HOH A 96 696 696 HOH HOH . G 6 HOH A 97 697 697 HOH HOH . G 6 HOH A 98 698 698 HOH HOH . G 6 HOH A 99 699 699 HOH HOH . G 6 HOH A 100 700 700 HOH HOH . G 6 HOH A 101 701 701 HOH HOH . G 6 HOH A 102 702 702 HOH HOH . G 6 HOH A 103 703 703 HOH HOH . G 6 HOH A 104 704 704 HOH HOH . G 6 HOH A 105 705 705 HOH HOH . G 6 HOH A 106 706 706 HOH HOH . G 6 HOH A 107 707 707 HOH HOH . G 6 HOH A 108 708 708 HOH HOH . G 6 HOH A 109 709 709 HOH HOH . G 6 HOH A 110 710 710 HOH HOH . G 6 HOH A 111 711 711 HOH HOH . G 6 HOH A 112 712 712 HOH HOH . G 6 HOH A 113 713 713 HOH HOH . G 6 HOH A 114 714 714 HOH HOH . G 6 HOH A 115 715 715 HOH HOH . G 6 HOH A 116 716 716 HOH HOH . G 6 HOH A 117 717 717 HOH HOH . G 6 HOH A 118 718 718 HOH HOH . G 6 HOH A 119 719 719 HOH HOH . G 6 HOH A 120 720 720 HOH HOH . G 6 HOH A 121 721 721 HOH HOH . G 6 HOH A 122 722 722 HOH HOH . G 6 HOH A 123 723 723 HOH HOH . G 6 HOH A 124 724 724 HOH HOH . G 6 HOH A 125 725 725 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -13.864 -21.311 -26.782 1 35.57 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 -9.83 -23.863 -26.978 1 36.81 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 -9.767 -23.195 -31.777 1 35.74 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 -14.097 -21.094 -31.606 1 37.25 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 -12.744 -22.013 -26.477 1 36.67 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 -12.417 -22.372 -25.151 1 40.67 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 -11.271 -23.109 -25.195 1 33.42 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 -10.898 -23.197 -26.545 1 36.73 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 -10.503 -23.706 -24.066 1 36.22 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -13.176 -21.938 -23.925 1 40.77 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -14.321 -22.865 -23.583 1 43.49 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -14.889 -22.471 -22.24 1 44.71 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -14.749 -23.131 -21.182 1 43.96 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -15.528 -21.435 -22.199 1 40.85 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 -9.465 -23.861 -28.329 1 39.1 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 -8.263 -24.48 -28.808 1 34.08 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 -8.224 -24.271 -30.152 1 37.84 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 -9.428 -23.497 -30.473 1 35.08 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 -7.22 -25.192 -27.956 1 34.92 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 -7.264 -24.706 -31.201 1 36.94 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 -6.353 -25.621 -30.978 1 45.51 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 -10.961 -22.645 -32.179 1 39.04 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 -11.383 -22.479 -33.505 1 37.15 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 -12.601 -21.836 -33.472 1 37.38 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 -12.958 -21.664 -32.095 1 41.21 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 -10.698 -22.905 -34.812 1 37.36 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 -13.288 -21.634 -34.765 1 43.84 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 -14.566 -21.491 -34.874 1 52.79 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 -14.325 -20.977 -30.248 1 37.57 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 -15.496 -20.293 -29.703 1 35.67 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 -15.441 -20.405 -28.394 1 37.79 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 -14.239 -21.12 -28.092 1 33.09 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 -16.635 -19.624 -30.413 1 40.81 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 -16.435 -19.825 -27.429 1 39.71 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -17.471 -20.9 -27.102 1 43.58 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -18.511 -20.397 -26.094 1 52.75 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -18.238 -19.51 -25.238 1 43.59 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -19.652 -20.915 -26.081 1 46.52 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 -11.827 -22.604 -27.354 1 39.12 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 -10.109 -23.301 -29.341 1 36 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 -11.909 -22.151 -31.335 1 39.92 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 -13.604 -21.484 -29.244 1 39.73 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 -11.981 -22.461 -29.322 1 39.48 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #