data_7RL5
#
_model_server_result.job_id            rXQamVILRoV3c1f4gxy17w 
_model_server_result.datetime_utc      '2025-07-06 19:24:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":601}' 
#
_entry.id    7RL5 
#
_exptl.entry_id    7RL5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RL5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CTP sing 70 n n 
N1 C6 CTP sing 71 n n 
N1 C1' CTP sing 72 n n 
C2 N3 CTP sing 73 n n 
C2 O2 CTP doub 74 n n 
N3 C4 CTP doub 75 n n 
C4 C5 CTP sing 76 n n 
C4 N4 CTP sing 77 n n 
C5 C6 CTP doub 78 n n 
C5 H5 CTP sing 79 n n 
C6 H6 CTP sing 80 n n 
N4 HN41 CTP sing 81 n n 
N4 HN42 CTP sing 82 n n 
C1' C2' CTP sing 83 n n 
C1' O4' CTP sing 84 n n 
C1' H1' CTP sing 85 n n 
C2' O2' CTP sing 86 n n 
C2' C3' CTP sing 87 n n 
C2' H2' CTP sing 88 n n 
O2' HO2' CTP sing 89 n n 
C3' C4' CTP sing 90 n n 
C3' O3' CTP sing 91 n n 
C3' H3' CTP sing 92 n n 
C4' O4' CTP sing 93 n n 
C4' C5' CTP sing 94 n n 
C4' H4' CTP sing 95 n n 
O3' HO3' CTP sing 96 n n 
C5' O5' CTP sing 97 n n 
C5' "H5'1" CTP sing 98 n n 
C5' "H5'2" CTP sing 99 n n 
O5' PA CTP sing 100 n n 
PA O1A CTP doub 101 n n 
PA O2A CTP sing 102 n n 
PA O3A CTP sing 103 n n 
O2A HOA2 CTP sing 104 n n 
O3A PB CTP sing 105 n n 
PB O1B CTP doub 106 n n 
PB O2B CTP sing 107 n n 
PB O3B CTP sing 108 n n 
O2B HOB2 CTP sing 109 n n 
O3B PG CTP sing 110 n n 
PG O1G CTP doub 111 n n 
PG O2G CTP sing 112 n n 
PG O3G CTP sing 113 n n 
O2G HOG2 CTP sing 114 n n 
O3G HOG3 CTP sing 115 n n 
#
_atom_sites.entry_id                     7RL5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 CTP A 1 601 602 CTP CTP . 
N 2 CTP A 1 602 601 CTP CTP . 
O 2 CTP B 1 601 602 CTP CTP . 
P 2 CTP B 1 602 601 CTP CTP . 
Q 2 CTP C 1 601 602 CTP CTP . 
R 2 CTP C 1 602 601 CTP CTP . 
S 2 CTP D 1 601 602 CTP CTP . 
T 2 CTP D 1 602 601 CTP CTP . 
U 2 CTP E 1 601 602 CTP CTP . 
V 2 CTP E 1 602 601 CTP CTP . 
W 2 CTP M 1 601 602 CTP CTP . 
X 2 CTP M 1 602 601 CTP CTP . 
Y 2 CTP P 1 601 602 CTP CTP . 
Z 2 CTP P 1 602 601 CTP CTP . 
AA 2 CTP R 1 601 602 CTP CTP . 
BA 2 CTP R 1 602 601 CTP CTP . 
CA 2 CTP L 1 601 602 CTP CTP . 
DA 2 CTP L 1 602 601 CTP CTP . 
EA 2 CTP O 1 601 602 CTP CTP . 
FA 2 CTP O 1 602 601 CTP CTP . 
GA 2 CTP Q 1 601 602 CTP CTP . 
HA 2 CTP Q 1 602 601 CTP CTP . 
IA 2 CTP S 1 601 602 CTP CTP . 
JA 2 CTP S 1 602 601 CTP CTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . AA 2 278.066 135.81 286.312 1 35.99 ? N1 CTP 601 R 1 
HETATM 2 C C2 CTP . . . AA 2 279.021 135.01 286.973 1 35.99 ? C2 CTP 601 R 1 
HETATM 3 N N3 CTP . . . AA 2 280.291 135.451 287.117 1 35.99 ? N3 CTP 601 R 1 
HETATM 4 C C4 CTP . . . AA 2 280.653 136.658 286.63 1 35.99 ? C4 CTP 601 R 1 
HETATM 5 C C5 CTP . . . AA 2 279.72 137.454 285.977 1 35.99 ? C5 CTP 601 R 1 
HETATM 6 C C6 CTP . . . AA 2 278.414 137.005 285.826 1 35.99 ? C6 CTP 601 R 1 
HETATM 7 O O2 CTP . . . AA 2 278.696 133.893 287.426 1 35.99 ? O2 CTP 601 R 1 
HETATM 8 N N4 CTP . . . AA 2 281.928 137.093 286.778 1 35.99 ? N4 CTP 601 R 1 
HETATM 9 C C1' CTP . . . AA 2 276.691 135.327 286.158 1 35.99 ? C1' CTP 601 R 1 
HETATM 10 C C2' CTP . . . AA 2 275.949 135.463 287.478 1 35.99 ? C2' CTP 601 R 1 
HETATM 11 O O2' CTP . . . AA 2 275.58 134.163 287.962 1 35.99 ? O2' CTP 601 R 1 
HETATM 12 C C3' CTP . . . AA 2 274.747 136.353 287.2 1 35.99 ? C3' CTP 601 R 1 
HETATM 13 C C4' CTP . . . AA 2 274.845 136.75 285.735 1 35.99 ? C4' CTP 601 R 1 
HETATM 14 O O4' CTP . . . AA 2 276.007 136.124 285.187 1 35.99 ? O4' CTP 601 R 1 
HETATM 15 O O3' CTP . . . AA 2 273.498 135.688 287.436 1 35.99 ? O3' CTP 601 R 1 
HETATM 16 C C5' CTP . . . AA 2 274.951 138.262 285.581 1 35.99 ? C5' CTP 601 R 1 
HETATM 17 O O5' CTP . . . AA 2 275.534 138.572 284.316 1 35.99 ? O5' CTP 601 R 1 
HETATM 18 P PA CTP . . . AA 2 276.4 139.915 284.122 1 35.99 ? PA CTP 601 R 1 
HETATM 19 O O1A CTP . . . AA 2 277.667 139.56 283.384 1 35.99 ? O1A CTP 601 R 1 
HETATM 20 O O2A CTP . . . AA 2 276.477 140.622 285.454 1 35.99 ? O2A CTP 601 R 1 
HETATM 21 O O3A CTP . . . AA 2 275.474 140.793 283.138 1 35.99 ? O3A CTP 601 R 1 
HETATM 22 P PB CTP . . . AA 2 273.979 141.203 283.57 1 35.99 ? PB CTP 601 R 1 
HETATM 23 O O1B CTP . . . AA 2 273.01 140.351 282.783 1 35.99 ? O1B CTP 601 R 1 
HETATM 24 O O2B CTP . . . AA 2 273.911 141.224 285.078 1 35.99 ? O2B CTP 601 R 1 
HETATM 25 O O3B CTP . . . AA 2 273.859 142.72 283.04 1 35.99 ? O3B CTP 601 R 1 
HETATM 26 P PG CTP . . . AA 2 275.041 143.781 283.31 1 35.99 ? PG CTP 601 R 1 
HETATM 27 O O1G CTP . . . AA 2 275.598 144.059 281.933 1 35.99 ? O1G CTP 601 R 1 
HETATM 28 O O2G CTP . . . AA 2 275.988 143.05 284.229 1 35.99 ? O2G CTP 601 R 1 
HETATM 29 O O3G CTP . . . AA 2 274.335 144.954 283.945 1 35.99 ? O3G CTP 601 R 1 
HETATM 30 H H5 CTP . . . AA 2 280.009 138.419 285.589 1 35.99 ? H5 CTP 601 R 1 
HETATM 31 H H6 CTP . . . AA 2 277.683 137.619 285.319 1 35.99 ? H6 CTP 601 R 1 
HETATM 32 H HN41 CTP . . . AA 2 282.199 137.994 286.415 1 35.99 ? HN41 CTP 601 R 1 
HETATM 33 H HN42 CTP . . . AA 2 282.607 136.515 287.253 1 35.99 ? HN42 CTP 601 R 1 
HETATM 34 H H1' CTP . . . AA 2 276.697 134.285 285.843 1 35.99 ? H1' CTP 601 R 1 
HETATM 35 H H2' CTP . . . AA 2 276.596 135.949 288.208 1 35.99 ? H2' CTP 601 R 1 
HETATM 36 H HO2' CTP . . . AA 2 276.283 133.54 287.771 1 35.99 ? HO2' CTP 601 R 1 
HETATM 37 H H3' CTP . . . AA 2 274.805 137.246 287.822 1 35.99 ? H3' CTP 601 R 1 
HETATM 38 H H4' CTP . . . AA 2 273.961 136.396 285.204 1 35.99 ? H4' CTP 601 R 1 
HETATM 39 H HO3' CTP . . . AA 2 273.437 135.438 288.361 1 35.99 ? HO3' CTP 601 R 1 
HETATM 40 H "H5'1" CTP . . . AA 2 273.957 138.704 285.64 1 35.99 ? "H5'1" CTP 601 R 1 
HETATM 41 H "H5'2" CTP . . . AA 2 275.577 138.665 286.379 1 35.99 ? "H5'2" CTP 601 R 1 
#
_model_server_stats.io_time_ms              141 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    91 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           41 
#