data_7RLH # _model_server_result.job_id HA1_NJqTdxF8FzzaMRqpRQ _model_server_result.datetime_utc '2024-11-22 19:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":901}' # _entry.id 7RLH # _exptl.entry_id 7RLH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RLH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 K N N ? 2 L N N ? 2 O N N ? 2 P N N ? 2 S N N ? 2 T N N ? 2 W N N ? 2 X N N ? 2 AA N N ? 2 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 252 A THR 252 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A OG1 THR 525 A THR 525 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 G O3G AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 G O1B AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 H O2G AGS . A AGS 902 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 H O1B AGS . A AGS 902 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc7 H O1A AGS . A AGS 902 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc8 B OG1 THR 252 B THR 252 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 B OG1 THR 525 B THR 525 1_555 N MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc10 K O3G AGS . B AGS 901 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 K O1B AGS . B AGS 901 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc12 L O2G AGS . B AGS 902 1_555 N MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 L O1B AGS . B AGS 902 1_555 N MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc14 L O1A AGS . B AGS 902 1_555 N MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc15 C OG1 THR 252 C THR 252 1_555 Q MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc16 C OG1 THR 525 C THR 525 1_555 R MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc17 O O3G AGS . C AGS 901 1_555 Q MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc18 O O1B AGS . C AGS 901 1_555 Q MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc19 P O2G AGS . C AGS 902 1_555 R MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc20 P O1B AGS . C AGS 902 1_555 R MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc21 P O1A AGS . C AGS 902 1_555 R MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc22 D OG1 THR 252 D THR 252 1_555 U MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc23 D OG1 THR 525 D THR 525 1_555 V MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc24 S O3G AGS . D AGS 901 1_555 U MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc25 S O1B AGS . D AGS 901 1_555 U MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc26 T O2G AGS . D AGS 902 1_555 V MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc27 T O1B AGS . D AGS 902 1_555 V MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc28 T O1A AGS . D AGS 902 1_555 V MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc29 E OG1 THR 252 E THR 252 1_555 Y MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc30 E OG1 THR 525 E THR 525 1_555 Z MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc31 W O3G AGS . E AGS 901 1_555 Y MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc32 W O1B AGS . E AGS 901 1_555 Y MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc33 X O2G AGS . E AGS 902 1_555 Z MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc34 X O1B AGS . E AGS 902 1_555 Z MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc35 X O1A AGS . E AGS 902 1_555 Z MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc36 F OG1 THR 252 F THR 252 1_555 CA MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc37 F OG1 THR 525 F THR 525 1_555 DA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc38 AA O3G AGS . F AGS 901 1_555 CA MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc39 AA O1B AGS . F AGS 901 1_555 CA MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc40 BA O2G AGS . F AGS 902 1_555 DA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc41 BA O1B AGS . F AGS 902 1_555 DA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc42 BA O1A AGS . F AGS 902 1_555 DA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 7RLH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 AGS A 1 901 901 AGS AGS . H 2 AGS A 1 902 902 AGS AGS . I 3 MG A 1 903 903 MG MG . J 3 MG A 1 904 904 MG MG . K 2 AGS B 1 901 901 AGS AGS . L 2 AGS B 1 902 902 AGS AGS . M 3 MG B 1 903 903 MG MG . N 3 MG B 1 904 904 MG MG . O 2 AGS C 1 901 901 AGS AGS . P 2 AGS C 1 902 902 AGS AGS . Q 3 MG C 1 903 903 MG MG . R 3 MG C 1 904 904 MG MG . S 2 AGS D 1 901 901 AGS AGS . T 2 AGS D 1 902 902 AGS AGS . U 3 MG D 1 903 903 MG MG . V 3 MG D 1 904 904 MG MG . W 2 AGS E 1 901 901 AGS AGS . X 2 AGS E 1 902 902 AGS AGS . Y 3 MG E 1 903 903 MG MG . Z 3 MG E 1 904 904 MG MG . AA 2 AGS F 1 901 901 AGS AGS . BA 2 AGS F 1 902 902 AGS AGS . CA 3 MG F 1 903 903 MG MG . DA 3 MG F 1 904 904 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . K 2 186.638 146.076 172.278 1 87.48 ? PG AGS 901 B 1 HETATM 2 S S1G AGS . . . K 2 185.764 147.635 171.505 1 87.48 ? S1G AGS 901 B 1 HETATM 3 O O2G AGS . . . K 2 185.776 144.81 172.012 1 87.48 ? O2G AGS 901 B 1 HETATM 4 O O3G AGS . . . K 2 186.799 146.286 173.81 1 87.48 ? O3G AGS 901 B 1 HETATM 5 P PB AGS . . . K 2 189.328 146.084 172.545 1 87.48 ? PB AGS 901 B 1 HETATM 6 O O1B AGS . . . K 2 189.136 147.205 173.488 1 87.48 ? O1B AGS 901 B 1 HETATM 7 O O2B AGS . . . K 2 190.486 146.309 171.573 1 87.48 ? O2B AGS 901 B 1 HETATM 8 O O3B AGS . . . K 2 188.046 145.894 171.645 1 87.48 ? O3B AGS 901 B 1 HETATM 9 P PA AGS . . . K 2 191.094 144.109 173.122 1 87.48 ? PA AGS 901 B 1 HETATM 10 O O1A AGS . . . K 2 192.094 144.723 174.012 1 87.48 ? O1A AGS 901 B 1 HETATM 11 O O2A AGS . . . K 2 191.385 144.257 171.631 1 87.48 ? O2A AGS 901 B 1 HETATM 12 O O3A AGS . . . K 2 189.667 144.751 173.325 1 87.48 ? O3A AGS 901 B 1 HETATM 13 O O5' AGS . . . K 2 190.964 142.589 173.511 1 87.48 ? O5' AGS 901 B 1 HETATM 14 C C5' AGS . . . K 2 190.995 141.577 172.486 1 87.48 ? C5' AGS 901 B 1 HETATM 15 C C4' AGS . . . K 2 192.19 140.684 172.701 1 87.48 ? C4' AGS 901 B 1 HETATM 16 O O4' AGS . . . K 2 192.727 140.285 171.421 1 87.48 ? O4' AGS 901 B 1 HETATM 17 C C3' AGS . . . K 2 193.356 141.322 173.447 1 87.48 ? C3' AGS 901 B 1 HETATM 18 O O3' AGS . . . K 2 193.218 141.139 174.85 1 87.48 ? O3' AGS 901 B 1 HETATM 19 C C2' AGS . . . K 2 194.556 140.553 172.897 1 87.48 ? C2' AGS 901 B 1 HETATM 20 O O2' AGS . . . K 2 194.719 139.301 173.551 1 87.48 ? O2' AGS 901 B 1 HETATM 21 C C1' AGS . . . K 2 194.14 140.34 171.442 1 87.48 ? C1' AGS 901 B 1 HETATM 22 N N9 AGS . . . K 2 194.569 141.404 170.544 1 87.48 ? N9 AGS 901 B 1 HETATM 23 C C8 AGS . . . K 2 193.781 142.352 169.951 1 87.48 ? C8 AGS 901 B 1 HETATM 24 N N7 AGS . . . K 2 194.437 143.193 169.188 1 87.48 ? N7 AGS 901 B 1 HETATM 25 C C5 AGS . . . K 2 195.753 142.77 169.291 1 87.48 ? C5 AGS 901 B 1 HETATM 26 C C6 AGS . . . K 2 196.948 143.245 168.721 1 87.48 ? C6 AGS 901 B 1 HETATM 27 N N6 AGS . . . K 2 197.012 144.295 167.899 1 87.48 ? N6 AGS 901 B 1 HETATM 28 N N1 AGS . . . K 2 198.091 142.594 169.029 1 87.48 ? N1 AGS 901 B 1 HETATM 29 C C2 AGS . . . K 2 198.031 141.543 169.851 1 87.48 ? C2 AGS 901 B 1 HETATM 30 N N3 AGS . . . K 2 196.965 141.005 170.447 1 87.48 ? N3 AGS 901 B 1 HETATM 31 C C4 AGS . . . K 2 195.85 141.67 170.124 1 87.48 ? C4 AGS 901 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 112 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #