data_7RLI
#
_model_server_result.job_id            SY_glXDu4uvKEYz83nOBuA 
_model_server_result.datetime_utc      '2024-11-22 14:10:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rli 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":901}' 
#
_entry.id    7RLI 
#
_exptl.entry_id    7RLI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              413.472 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RLI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7RLI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
? 2 EA N N 
? 2 GA N N 
? 2 IA N N 
#
_chem_comp.formula           'C24 H23 N5 O2' 
_chem_comp.formula_weight    413.472 
_chem_comp.id                JDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 JDP doub 215 n n 
N31 C02 JDP sing 216 n n 
C02 C03 JDP sing 217 n n 
C09 C08 JDP sing 218 n y 
C09 C10 JDP doub 219 n y 
C03 C08 JDP doub 220 n y 
C03 C04 JDP sing 221 n y 
C08 C07 JDP sing 222 n y 
C11 C10 JDP sing 223 n n 
C04 C05 JDP doub 224 n y 
C10 N12 JDP sing 225 n y 
C07 N12 JDP sing 226 n y 
C07 C06 JDP doub 227 n y 
N12 C13 JDP sing 228 n n 
C05 C06 JDP sing 229 n y 
C13 N30 JDP doub 230 n y 
C13 N14 JDP sing 231 n y 
N30 C29 JDP sing 232 n y 
N14 C15 JDP doub 233 n y 
C29 C28 JDP sing 234 n n 
C29 C24 JDP doub 235 n y 
C28 C27 JDP sing 236 n n 
C15 C24 JDP sing 237 n y 
C15 N16 JDP sing 238 n n 
C22 C21 JDP doub 239 n y 
C22 C23 JDP sing 240 n y 
C24 C25 JDP sing 241 n n 
C21 C20 JDP sing 242 n y 
C23 C18 JDP doub 243 n y 
N16 C17 JDP sing 244 n n 
C27 O26 JDP sing 245 n n 
C20 C19 JDP doub 246 n y 
C18 C19 JDP sing 247 n y 
C18 C17 JDP sing 248 n n 
C25 O26 JDP sing 249 n n 
C22 H1 JDP sing 250 n n 
C21 H2 JDP sing 251 n n 
C04 H3 JDP sing 252 n n 
C05 H4 JDP sing 253 n n 
C06 H5 JDP sing 254 n n 
C09 H6 JDP sing 255 n n 
C11 H7 JDP sing 256 n n 
C11 H8 JDP sing 257 n n 
C11 H9 JDP sing 258 n n 
N16 H10 JDP sing 259 n n 
C17 H11 JDP sing 260 n n 
C17 H12 JDP sing 261 n n 
C19 H13 JDP sing 262 n n 
C20 H14 JDP sing 263 n n 
C23 H15 JDP sing 264 n n 
C25 H16 JDP sing 265 n n 
C25 H17 JDP sing 266 n n 
C27 H18 JDP sing 267 n n 
C27 H19 JDP sing 268 n n 
C28 H20 JDP sing 269 n n 
C28 H21 JDP sing 270 n n 
N31 H22 JDP sing 271 n n 
N31 H23 JDP sing 272 n n 
#
_atom_sites.entry_id                     7RLI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 JDP A 1 901 900 JDP JDP . 
N 3 ADP A 1 902 1001 ADP ADP . 
O 2 JDP B 1 901 900 JDP JDP . 
P 3 ADP B 1 902 1001 ADP ADP . 
Q 2 JDP C 1 901 900 JDP JDP . 
R 3 ADP C 1 902 1001 ADP ADP . 
S 2 JDP D 1 901 900 JDP JDP . 
T 3 ADP D 1 902 1001 ADP ADP . 
U 2 JDP E 1 901 900 JDP JDP . 
V 3 ADP E 1 902 1001 ADP ADP . 
W 2 JDP F 1 901 900 JDP JDP . 
X 3 ADP F 1 902 1001 ADP ADP . 
Y 2 JDP G 1 901 900 JDP JDP . 
Z 3 ADP G 1 902 1001 ADP ADP . 
AA 2 JDP H 1 901 900 JDP JDP . 
BA 3 ADP H 1 902 1001 ADP ADP . 
CA 2 JDP I 1 901 900 JDP JDP . 
DA 3 ADP I 1 902 1001 ADP ADP . 
EA 2 JDP J 1 901 900 JDP JDP . 
FA 3 ADP J 1 902 1001 ADP ADP . 
GA 2 JDP K 1 901 900 JDP JDP . 
HA 3 ADP K 1 902 1001 ADP ADP . 
IA 2 JDP L 1 901 900 JDP JDP . 
JA 3 ADP L 1 902 1001 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C22 JDP . . . CA 2 240.114 214.949 181.496 1 100.92 ? C22 JDP 901 I 1 
HETATM 2 C C21 JDP . . . CA 2 240.04 215.135 182.864 1 100.92 ? C21 JDP 901 I 1 
HETATM 3 O O01 JDP . . . CA 2 233.738 220.992 181.796 1 100.92 ? O01 JDP 901 I 1 
HETATM 4 C C02 JDP . . . CA 2 233.98 219.856 182.021 1 100.92 ? C02 JDP 901 I 1 
HETATM 5 C C03 JDP . . . CA 2 235.353 219.28 181.688 1 100.92 ? C03 JDP 901 I 1 
HETATM 6 C C04 JDP . . . CA 2 235.657 218.078 182.302 1 100.92 ? C04 JDP 901 I 1 
HETATM 7 C C05 JDP . . . CA 2 236.878 217.469 182.065 1 100.92 ? C05 JDP 901 I 1 
HETATM 8 C C06 JDP . . . CA 2 237.789 218.061 181.21 1 100.92 ? C06 JDP 901 I 1 
HETATM 9 C C07 JDP . . . CA 2 237.478 219.28 180.587 1 100.92 ? C07 JDP 901 I 1 
HETATM 10 C C08 JDP . . . CA 2 236.278 219.884 180.821 1 100.92 ? C08 JDP 901 I 1 
HETATM 11 C C09 JDP . . . CA 2 236.239 221.039 180.095 1 100.92 ? C09 JDP 901 I 1 
HETATM 12 C C10 JDP . . . CA 2 237.427 221.147 179.411 1 100.92 ? C10 JDP 901 I 1 
HETATM 13 C C11 JDP . . . CA 2 237.216 222.464 178.67 1 100.92 ? C11 JDP 901 I 1 
HETATM 14 N N12 JDP . . . CA 2 238.183 220.069 179.719 1 100.92 ? N12 JDP 901 I 1 
HETATM 15 C C13 JDP . . . CA 2 239.502 219.78 179.204 1 100.92 ? C13 JDP 901 I 1 
HETATM 16 N N14 JDP . . . CA 2 240.478 219.353 180.031 1 100.92 ? N14 JDP 901 I 1 
HETATM 17 C C15 JDP . . . CA 2 241.676 219.081 179.546 1 100.92 ? C15 JDP 901 I 1 
HETATM 18 N N16 JDP . . . CA 2 242.708 218.634 180.459 1 100.92 ? N16 JDP 901 I 1 
HETATM 19 C C17 JDP . . . CA 2 243.009 217.223 180.579 1 100.92 ? C17 JDP 901 I 1 
HETATM 20 C C18 JDP . . . CA 2 241.949 216.487 181.391 1 100.92 ? C18 JDP 901 I 1 
HETATM 21 C C19 JDP . . . CA 2 241.879 216.67 182.759 1 100.92 ? C19 JDP 901 I 1 
HETATM 22 C C20 JDP . . . CA 2 240.922 215.995 183.495 1 100.92 ? C20 JDP 901 I 1 
HETATM 23 C C23 JDP . . . CA 2 241.072 215.624 180.759 1 100.92 ? C23 JDP 901 I 1 
HETATM 24 C C24 JDP . . . CA 2 241.926 219.227 178.202 1 100.92 ? C24 JDP 901 I 1 
HETATM 25 C C25 JDP . . . CA 2 243.332 218.923 177.58 1 100.92 ? C25 JDP 901 I 1 
HETATM 26 O O26 JDP . . . CA 2 243.581 219.311 176.243 1 100.92 ? O26 JDP 901 I 1 
HETATM 27 C C27 JDP . . . CA 2 242.449 219.125 175.385 1 100.92 ? C27 JDP 901 I 1 
HETATM 28 C C28 JDP . . . CA 2 241.231 219.808 175.909 1 100.92 ? C28 JDP 901 I 1 
HETATM 29 C C29 JDP . . . CA 2 240.947 219.653 177.387 1 100.92 ? C29 JDP 901 I 1 
HETATM 30 N N30 JDP . . . CA 2 239.737 219.921 177.883 1 100.92 ? N30 JDP 901 I 1 
HETATM 31 N N31 JDP . . . CA 2 232.964 218.997 182.6 1 100.92 ? N31 JDP 901 I 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    92 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#