data_7RM2 # _model_server_result.job_id 6d2au84jytBYMxbmhz1biA _model_server_result.datetime_utc '2025-01-28 03:54:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RM2 # _exptl.entry_id 7RM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.229 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.37 _cell.angle_gamma 90 _cell.entry_id 7RM2 _cell.length_a 52.403 _cell.length_b 81.889 _cell.length_c 91.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_957 -x+4,y,-z+2 -1 0 0 0 1 0 0 0 -1 192.447016 0 182.607024 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 Cl2 N4 O3' _chem_comp.formula_weight 383.229 _chem_comp.id 5YJ _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 5YJ doub 1 n n C20 C22 5YJ sing 2 n n C20 N19 5YJ sing 3 n n C22 C1 5YJ doub 4 n n N19 C17 5YJ sing 5 n n C1 N16 5YJ sing 6 n n C1 C2 5YJ sing 7 n n C17 N16 5YJ sing 8 n n C17 O18 5YJ doub 9 n n CL25 C12 5YJ sing 10 n n O3 C2 5YJ doub 11 n n C2 N4 5YJ sing 12 n n C8 C9 5YJ sing 13 n n C8 N7 5YJ sing 14 n n C11 C12 5YJ doub 15 n y C11 C10 5YJ sing 16 n y C12 C13 5YJ sing 17 n y C9 N4 5YJ sing 18 n n N4 C5 5YJ sing 19 n n N7 C6 5YJ sing 20 n n N7 C10 5YJ sing 21 n n C6 C5 5YJ sing 22 n n C10 C15 5YJ doub 23 n y C13 C23 5YJ sing 24 n n C13 C14 5YJ doub 25 n y C15 C14 5YJ sing 26 n y C14 CL24 5YJ sing 27 n n C11 H1 5YJ sing 28 n n C15 H2 5YJ sing 29 n n C22 H3 5YJ sing 30 n n C23 H4 5YJ sing 31 n n C23 H5 5YJ sing 32 n n C23 H6 5YJ sing 33 n n C5 H7 5YJ sing 34 n n C5 H8 5YJ sing 35 n n C6 H9 5YJ sing 36 n n C6 H10 5YJ sing 37 n n C8 H11 5YJ sing 38 n n C8 H12 5YJ sing 39 n n C9 H13 5YJ sing 40 n n C9 H14 5YJ sing 41 n n N16 H15 5YJ sing 42 n n N19 H16 5YJ sing 43 n n # _atom_sites.entry_id 7RM2 _atom_sites.fract_transf_matrix[1][1] 0.019083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001795 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5YJ A 1 401 401 5YJ MMC . C 3 HOH A 1 501 117 HOH HOH . C 3 HOH A 2 502 77 HOH HOH . C 3 HOH A 3 503 59 HOH HOH . C 3 HOH A 4 504 70 HOH HOH . C 3 HOH A 5 505 71 HOH HOH . C 3 HOH A 6 506 76 HOH HOH . C 3 HOH A 7 507 28 HOH HOH . C 3 HOH A 8 508 106 HOH HOH . C 3 HOH A 9 509 16 HOH HOH . C 3 HOH A 10 510 81 HOH HOH . C 3 HOH A 11 511 52 HOH HOH . C 3 HOH A 12 512 24 HOH HOH . C 3 HOH A 13 513 95 HOH HOH . C 3 HOH A 14 514 93 HOH HOH . C 3 HOH A 15 515 80 HOH HOH . C 3 HOH A 16 516 31 HOH HOH . C 3 HOH A 17 517 29 HOH HOH . C 3 HOH A 18 518 99 HOH HOH . C 3 HOH A 19 519 94 HOH HOH . C 3 HOH A 20 520 42 HOH HOH . C 3 HOH A 21 521 79 HOH HOH . C 3 HOH A 22 522 72 HOH HOH . C 3 HOH A 23 523 116 HOH HOH . C 3 HOH A 24 524 34 HOH HOH . C 3 HOH A 25 525 9 HOH HOH . C 3 HOH A 26 526 12 HOH HOH . C 3 HOH A 27 527 46 HOH HOH . C 3 HOH A 28 528 139 HOH HOH . C 3 HOH A 29 529 40 HOH HOH . C 3 HOH A 30 530 13 HOH HOH . C 3 HOH A 31 531 26 HOH HOH . C 3 HOH A 32 532 111 HOH HOH . C 3 HOH A 33 533 4 HOH HOH . C 3 HOH A 34 534 60 HOH HOH . C 3 HOH A 35 535 30 HOH HOH . C 3 HOH A 36 536 92 HOH HOH . C 3 HOH A 37 537 100 HOH HOH . C 3 HOH A 38 538 21 HOH HOH . C 3 HOH A 39 539 11 HOH HOH . C 3 HOH A 40 540 63 HOH HOH . C 3 HOH A 41 541 85 HOH HOH . C 3 HOH A 42 542 17 HOH HOH . C 3 HOH A 43 543 33 HOH HOH . C 3 HOH A 44 544 6 HOH HOH . C 3 HOH A 45 545 5 HOH HOH . C 3 HOH A 46 546 88 HOH HOH . C 3 HOH A 47 547 35 HOH HOH . C 3 HOH A 48 548 114 HOH HOH . C 3 HOH A 49 549 10 HOH HOH . C 3 HOH A 50 550 96 HOH HOH . C 3 HOH A 51 551 15 HOH HOH . C 3 HOH A 52 552 102 HOH HOH . C 3 HOH A 53 553 1 HOH HOH . C 3 HOH A 54 554 3 HOH HOH . C 3 HOH A 55 555 48 HOH HOH . C 3 HOH A 56 556 54 HOH HOH . C 3 HOH A 57 557 55 HOH HOH . C 3 HOH A 58 558 49 HOH HOH . C 3 HOH A 59 559 38 HOH HOH . C 3 HOH A 60 560 8 HOH HOH . C 3 HOH A 61 561 65 HOH HOH . C 3 HOH A 62 562 69 HOH HOH . C 3 HOH A 63 563 53 HOH HOH . C 3 HOH A 64 564 91 HOH HOH . C 3 HOH A 65 565 78 HOH HOH . C 3 HOH A 66 566 105 HOH HOH . C 3 HOH A 67 567 2 HOH HOH . C 3 HOH A 68 568 45 HOH HOH . C 3 HOH A 69 569 124 HOH HOH . C 3 HOH A 70 570 130 HOH HOH . C 3 HOH A 71 571 23 HOH HOH . C 3 HOH A 72 572 14 HOH HOH . C 3 HOH A 73 573 39 HOH HOH . C 3 HOH A 74 574 32 HOH HOH . C 3 HOH A 75 575 84 HOH HOH . C 3 HOH A 76 576 97 HOH HOH . C 3 HOH A 77 577 56 HOH HOH . C 3 HOH A 78 578 41 HOH HOH . C 3 HOH A 79 579 7 HOH HOH . C 3 HOH A 80 580 20 HOH HOH . C 3 HOH A 81 581 37 HOH HOH . C 3 HOH A 82 582 44 HOH HOH . C 3 HOH A 83 583 43 HOH HOH . C 3 HOH A 84 584 19 HOH HOH . C 3 HOH A 85 585 66 HOH HOH . C 3 HOH A 86 586 27 HOH HOH . C 3 HOH A 87 587 101 HOH HOH . C 3 HOH A 88 588 22 HOH HOH . C 3 HOH A 89 589 74 HOH HOH . C 3 HOH A 90 590 86 HOH HOH . C 3 HOH A 91 591 134 HOH HOH . C 3 HOH A 92 592 119 HOH HOH . C 3 HOH A 93 593 107 HOH HOH . C 3 HOH A 94 594 51 HOH HOH . C 3 HOH A 95 595 118 HOH HOH . C 3 HOH A 96 596 36 HOH HOH . C 3 HOH A 97 597 61 HOH HOH . C 3 HOH A 98 598 128 HOH HOH . C 3 HOH A 99 599 127 HOH HOH . C 3 HOH A 100 600 64 HOH HOH . C 3 HOH A 101 601 57 HOH HOH . C 3 HOH A 102 602 50 HOH HOH . C 3 HOH A 103 603 121 HOH HOH . C 3 HOH A 104 604 25 HOH HOH . C 3 HOH A 105 605 133 HOH HOH . C 3 HOH A 106 606 129 HOH HOH . C 3 HOH A 107 607 122 HOH HOH . C 3 HOH A 108 608 113 HOH HOH . C 3 HOH A 109 609 103 HOH HOH . C 3 HOH A 110 610 126 HOH HOH . C 3 HOH A 111 611 138 HOH HOH . C 3 HOH A 112 612 132 HOH HOH . C 3 HOH A 113 613 75 HOH HOH . C 3 HOH A 114 614 82 HOH HOH . C 3 HOH A 115 615 90 HOH HOH . C 3 HOH A 116 616 62 HOH HOH . C 3 HOH A 117 617 136 HOH HOH . C 3 HOH A 118 618 125 HOH HOH . C 3 HOH A 119 619 98 HOH HOH . C 3 HOH A 120 620 18 HOH HOH . C 3 HOH A 121 621 83 HOH HOH . C 3 HOH A 122 622 87 HOH HOH . C 3 HOH A 123 623 108 HOH HOH . C 3 HOH A 124 624 137 HOH HOH . C 3 HOH A 125 625 104 HOH HOH . C 3 HOH A 126 626 131 HOH HOH . C 3 HOH A 127 627 73 HOH HOH . C 3 HOH A 128 628 67 HOH HOH . C 3 HOH A 129 629 68 HOH HOH . C 3 HOH A 130 630 47 HOH HOH . C 3 HOH A 131 631 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5YJ . . . B 2 110.895 -3.676 108.518 1 28.73 ? C1 5YJ 401 A 1 HETATM 2 C C10 5YJ . . . B 2 105.173 -2.039 110.688 1 34.89 ? C10 5YJ 401 A 1 HETATM 3 C C11 5YJ . . . B 2 104.249 -2.634 109.817 1 35.08 ? C11 5YJ 401 A 1 HETATM 4 C C12 5YJ . . . B 2 102.887 -2.37 109.965 1 36.87 ? C12 5YJ 401 A 1 HETATM 5 C C13 5YJ . . . B 2 102.352 -1.528 110.943 1 36.41 ? C13 5YJ 401 A 1 HETATM 6 C C14 5YJ . . . B 2 103.318 -0.961 111.783 1 37.17 ? C14 5YJ 401 A 1 HETATM 7 C C15 5YJ . . . B 2 104.672 -1.19 111.684 1 35.11 ? C15 5YJ 401 A 1 HETATM 8 C C17 5YJ . . . B 2 112.12 -5.756 108.744 1 32.69 ? C17 5YJ 401 A 1 HETATM 9 C C2 5YJ . . . B 2 110.443 -2.481 109.322 1 29.66 ? C2 5YJ 401 A 1 HETATM 10 C C20 5YJ . . . B 2 111.159 -5.078 106.583 1 25.37 ? C20 5YJ 401 A 1 HETATM 11 C C22 5YJ . . . B 2 110.654 -3.876 107.205 1 26.62 ? C22 5YJ 401 A 1 HETATM 12 C C23 5YJ . . . B 2 100.893 -1.232 111.114 1 37.43 ? C23 5YJ 401 A 1 HETATM 13 C C5 5YJ . . . B 2 108.861 -1.519 111.022 1 29.7 ? C5 5YJ 401 A 1 HETATM 14 C C6 5YJ . . . B 2 107.443 -1.092 110.682 1 27.97 ? C6 5YJ 401 A 1 HETATM 15 C C8 5YJ . . . B 2 107.044 -3.278 109.69 1 32.47 ? C8 5YJ 401 A 1 HETATM 16 C C9 5YJ . . . B 2 108.456 -3.702 110.057 1 29.73 ? C9 5YJ 401 A 1 HETATM 17 N N16 5YJ . . . B 2 111.608 -4.588 109.249 1 29.9 ? N16 5YJ 401 A 1 HETATM 18 N N19 5YJ . . . B 2 111.864 -5.935 107.412 1 26.12 ? N19 5YJ 401 A 1 HETATM 19 N N4 5YJ . . . B 2 109.338 -2.538 110.086 1 29.4 ? N4 5YJ 401 A 1 HETATM 20 N N7 5YJ . . . B 2 106.555 -2.261 110.618 1 32.31 ? N7 5YJ 401 A 1 HETATM 21 O O18 5YJ . . . B 2 112.746 -6.561 109.409 1 33.4 ? O18 5YJ 401 A 1 HETATM 22 O O21 5YJ . . . B 2 111.012 -5.391 105.42 1 26.66 ? O21 5YJ 401 A 1 HETATM 23 O O3 5YJ . . . B 2 111.151 -1.481 109.232 1 29.76 ? O3 5YJ 401 A 1 HETATM 24 CL CL24 5YJ . . . B 2 102.786 0.123 113.064 1 38.65 ? CL24 5YJ 401 A 1 HETATM 25 CL CL25 5YJ . . . B 2 101.788 -3.153 108.826 1 34.51 ? CL25 5YJ 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #