data_7RMB # _model_server_result.job_id ZZLADO-8vErI_rNanxVbQg _model_server_result.datetime_utc '2024-10-19 04:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RMB # _exptl.entry_id 7RMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(4-bromo-3-chlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.64 _cell.angle_gamma 90 _cell.entry_id 7RMB _cell.length_a 52.197 _cell.length_b 81.708 _cell.length_c 91.251 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 52.197 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H14 Br Cl N4 O3' _chem_comp.formula_weight 413.654 _chem_comp.id 5Z7 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(4-bromo-3-chlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 5Z7 doub 1 n n C20 C22 5Z7 sing 2 n n C20 N19 5Z7 sing 3 n n C22 C1 5Z7 doub 4 n n N19 C17 5Z7 sing 5 n n C1 N16 5Z7 sing 6 n n C1 C2 5Z7 sing 7 n n C17 N16 5Z7 sing 8 n n C17 O18 5Z7 doub 9 n n CL23 C12 5Z7 sing 10 n n O3 C2 5Z7 doub 11 n n C2 N4 5Z7 sing 12 n n C6 C5 5Z7 sing 13 n n C6 N7 5Z7 sing 14 n n C11 C12 5Z7 doub 15 n y C11 C10 5Z7 sing 16 n y C12 C13 5Z7 sing 17 n y N4 C5 5Z7 sing 18 n n N4 C9 5Z7 sing 19 n n C8 N7 5Z7 sing 20 n n C8 C9 5Z7 sing 21 n n N7 C10 5Z7 sing 22 n n C10 C15 5Z7 doub 23 n y C13 BR24 5Z7 sing 24 n n C13 C14 5Z7 doub 25 n y C15 C14 5Z7 sing 26 n y C11 H1 5Z7 sing 27 n n C14 H2 5Z7 sing 28 n n C15 H3 5Z7 sing 29 n n C22 H4 5Z7 sing 30 n n C5 H5 5Z7 sing 31 n n C5 H6 5Z7 sing 32 n n C6 H7 5Z7 sing 33 n n C6 H8 5Z7 sing 34 n n C8 H9 5Z7 sing 35 n n C8 H10 5Z7 sing 36 n n C9 H11 5Z7 sing 37 n n C9 H12 5Z7 sing 38 n n N16 H13 5Z7 sing 39 n n N19 H14 5Z7 sing 40 n n # _atom_sites.entry_id 7RMB _atom_sites.fract_transf_matrix[1][1] 0.019158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5Z7 A 1 401 401 5Z7 H78 . C 3 HOH A 1 501 87 HOH HOH . C 3 HOH A 2 502 89 HOH HOH . C 3 HOH A 3 503 49 HOH HOH . C 3 HOH A 4 504 34 HOH HOH . C 3 HOH A 5 505 113 HOH HOH . C 3 HOH A 6 506 54 HOH HOH . C 3 HOH A 7 507 47 HOH HOH . C 3 HOH A 8 508 56 HOH HOH . C 3 HOH A 9 509 53 HOH HOH . C 3 HOH A 10 510 48 HOH HOH . C 3 HOH A 11 511 39 HOH HOH . C 3 HOH A 12 512 64 HOH HOH . C 3 HOH A 13 513 32 HOH HOH . C 3 HOH A 14 514 55 HOH HOH . C 3 HOH A 15 515 12 HOH HOH . C 3 HOH A 16 516 126 HOH HOH . C 3 HOH A 17 517 77 HOH HOH . C 3 HOH A 18 518 83 HOH HOH . C 3 HOH A 19 519 2 HOH HOH . C 3 HOH A 20 520 23 HOH HOH . C 3 HOH A 21 521 60 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 31 HOH HOH . C 3 HOH A 24 524 29 HOH HOH . C 3 HOH A 25 525 74 HOH HOH . C 3 HOH A 26 526 1 HOH HOH . C 3 HOH A 27 527 61 HOH HOH . C 3 HOH A 28 528 3 HOH HOH . C 3 HOH A 29 529 80 HOH HOH . C 3 HOH A 30 530 17 HOH HOH . C 3 HOH A 31 531 35 HOH HOH . C 3 HOH A 32 532 40 HOH HOH . C 3 HOH A 33 533 19 HOH HOH . C 3 HOH A 34 534 119 HOH HOH . C 3 HOH A 35 535 131 HOH HOH . C 3 HOH A 36 536 33 HOH HOH . C 3 HOH A 37 537 36 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 14 HOH HOH . C 3 HOH A 40 540 5 HOH HOH . C 3 HOH A 41 541 4 HOH HOH . C 3 HOH A 42 542 43 HOH HOH . C 3 HOH A 43 543 45 HOH HOH . C 3 HOH A 44 544 51 HOH HOH . C 3 HOH A 45 545 73 HOH HOH . C 3 HOH A 46 546 27 HOH HOH . C 3 HOH A 47 547 26 HOH HOH . C 3 HOH A 48 548 16 HOH HOH . C 3 HOH A 49 549 9 HOH HOH . C 3 HOH A 50 550 118 HOH HOH . C 3 HOH A 51 551 58 HOH HOH . C 3 HOH A 52 552 42 HOH HOH . C 3 HOH A 53 553 7 HOH HOH . C 3 HOH A 54 554 30 HOH HOH . C 3 HOH A 55 555 133 HOH HOH . C 3 HOH A 56 556 127 HOH HOH . C 3 HOH A 57 557 44 HOH HOH . C 3 HOH A 58 558 95 HOH HOH . C 3 HOH A 59 559 52 HOH HOH . C 3 HOH A 60 560 93 HOH HOH . C 3 HOH A 61 561 50 HOH HOH . C 3 HOH A 62 562 11 HOH HOH . C 3 HOH A 63 563 76 HOH HOH . C 3 HOH A 64 564 116 HOH HOH . C 3 HOH A 65 565 102 HOH HOH . C 3 HOH A 66 566 21 HOH HOH . C 3 HOH A 67 567 90 HOH HOH . C 3 HOH A 68 568 28 HOH HOH . C 3 HOH A 69 569 129 HOH HOH . C 3 HOH A 70 570 24 HOH HOH . C 3 HOH A 71 571 8 HOH HOH . C 3 HOH A 72 572 63 HOH HOH . C 3 HOH A 73 573 86 HOH HOH . C 3 HOH A 74 574 69 HOH HOH . C 3 HOH A 75 575 13 HOH HOH . C 3 HOH A 76 576 101 HOH HOH . C 3 HOH A 77 577 37 HOH HOH . C 3 HOH A 78 578 15 HOH HOH . C 3 HOH A 79 579 65 HOH HOH . C 3 HOH A 80 580 18 HOH HOH . C 3 HOH A 81 581 41 HOH HOH . C 3 HOH A 82 582 67 HOH HOH . C 3 HOH A 83 583 25 HOH HOH . C 3 HOH A 84 584 91 HOH HOH . C 3 HOH A 85 585 10 HOH HOH . C 3 HOH A 86 586 98 HOH HOH . C 3 HOH A 87 587 46 HOH HOH . C 3 HOH A 88 588 120 HOH HOH . C 3 HOH A 89 589 70 HOH HOH . C 3 HOH A 90 590 20 HOH HOH . C 3 HOH A 91 591 121 HOH HOH . C 3 HOH A 92 592 105 HOH HOH . C 3 HOH A 93 593 125 HOH HOH . C 3 HOH A 94 594 68 HOH HOH . C 3 HOH A 95 595 106 HOH HOH . C 3 HOH A 96 596 97 HOH HOH . C 3 HOH A 97 597 100 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 110 HOH HOH . C 3 HOH A 100 600 66 HOH HOH . C 3 HOH A 101 601 94 HOH HOH . C 3 HOH A 102 602 88 HOH HOH . C 3 HOH A 103 603 57 HOH HOH . C 3 HOH A 104 604 104 HOH HOH . C 3 HOH A 105 605 112 HOH HOH . C 3 HOH A 106 606 114 HOH HOH . C 3 HOH A 107 607 111 HOH HOH . C 3 HOH A 108 608 79 HOH HOH . C 3 HOH A 109 609 108 HOH HOH . C 3 HOH A 110 610 115 HOH HOH . C 3 HOH A 111 611 124 HOH HOH . C 3 HOH A 112 612 92 HOH HOH . C 3 HOH A 113 613 72 HOH HOH . C 3 HOH A 114 614 123 HOH HOH . C 3 HOH A 115 615 136 HOH HOH . C 3 HOH A 116 616 78 HOH HOH . C 3 HOH A 117 617 6 HOH HOH . C 3 HOH A 118 618 85 HOH HOH . C 3 HOH A 119 619 75 HOH HOH . C 3 HOH A 120 620 128 HOH HOH . C 3 HOH A 121 621 117 HOH HOH . C 3 HOH A 122 622 96 HOH HOH . C 3 HOH A 123 623 135 HOH HOH . C 3 HOH A 124 624 122 HOH HOH . C 3 HOH A 125 625 59 HOH HOH . C 3 HOH A 126 626 107 HOH HOH . C 3 HOH A 127 627 62 HOH HOH . C 3 HOH A 128 628 134 HOH HOH . C 3 HOH A 129 629 81 HOH HOH . C 3 HOH A 130 630 132 HOH HOH . C 3 HOH A 131 631 84 HOH HOH . C 3 HOH A 132 632 71 HOH HOH . C 3 HOH A 133 633 130 HOH HOH . C 3 HOH A 134 634 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5Z7 . . . B 2 14.672 -1.652 17.189 1 33.41 ? C1 5Z7 401 A 1 HETATM 2 C C10 5Z7 . . . B 2 9.029 0.054 19.36 1 33.37 ? C10 5Z7 401 A 1 HETATM 3 C C11 5Z7 . . . B 2 8.137 -0.672 18.56 1 41.44 ? C11 5Z7 401 A 1 HETATM 4 C C12 5Z7 . . . B 2 6.768 -0.465 18.674 1 38.01 ? C12 5Z7 401 A 1 HETATM 5 C C13 5Z7 . . . B 2 6.259 0.456 19.574 1 42.09 ? C13 5Z7 401 A 1 HETATM 6 C C14 5Z7 . . . B 2 7.145 1.181 20.365 1 36.71 ? C14 5Z7 401 A 1 HETATM 7 C C15 5Z7 . . . B 2 8.503 0.983 20.269 1 39.53 ? C15 5Z7 401 A 1 HETATM 8 C C17 5Z7 . . . B 2 15.931 -3.707 17.452 1 41.92 ? C17 5Z7 401 A 1 HETATM 9 C C2 5Z7 . . . B 2 14.22 -0.472 18.005 1 36.1 ? C2 5Z7 401 A 1 HETATM 10 C C20 5Z7 . . . B 2 14.952 -3.07 15.288 1 30.33 ? C20 5Z7 401 A 1 HETATM 11 C C22 5Z7 . . . B 2 14.425 -1.866 15.882 1 30.11 ? C22 5Z7 401 A 1 HETATM 12 C C5 5Z7 . . . B 2 12.219 -1.695 18.913 1 33.08 ? C5 5Z7 401 A 1 HETATM 13 C C6 5Z7 . . . B 2 10.86 -1.241 18.431 1 36.1 ? C6 5Z7 401 A 1 HETATM 14 C C8 5Z7 . . . B 2 11.31 1.007 19.253 1 29.11 ? C8 5Z7 401 A 1 HETATM 15 C C9 5Z7 . . . B 2 12.727 0.577 19.611 1 34.95 ? C9 5Z7 401 A 1 HETATM 16 N N16 5Z7 . . . B 2 15.398 -2.543 17.923 1 30.29 ? N16 5Z7 401 A 1 HETATM 17 N N19 5Z7 . . . B 2 15.674 -3.902 16.129 1 30.08 ? N19 5Z7 401 A 1 HETATM 18 N N4 5Z7 . . . B 2 13.153 -0.574 18.812 1 37.44 ? N4 5Z7 401 A 1 HETATM 19 N N7 5Z7 . . . B 2 10.408 -0.139 19.284 1 33.75 ? N7 5Z7 401 A 1 HETATM 20 O O18 5Z7 . . . B 2 16.575 -4.483 18.137 1 39.12 ? O18 5Z7 401 A 1 HETATM 21 O O21 5Z7 . . . B 2 14.813 -3.41 14.135 1 31.36 ? O21 5Z7 401 A 1 HETATM 22 O O3 5Z7 . . . B 2 14.887 0.546 17.89 1 35.33 ? O3 5Z7 401 A 1 HETATM 23 BR BR24 5Z7 . . . B 2 4.396 0.753 19.742 1 44.75 ? BR24 5Z7 401 A 1 HETATM 24 CL CL23 5Z7 . . . B 2 5.684 -1.385 17.656 1 43.36 ? CL23 5Z7 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #