data_7RMK # _model_server_result.job_id gAstw-16tz1lb2p9jpBG2g _model_server_result.datetime_utc '2024-11-16 11:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":602}' # _entry.id 7RMK # _exptl.entry_id 7RMK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 28 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RMK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 CA N N ? 2 FA N N ? 2 GA N N ? 2 IA N N ? 2 KA N N ? 2 NA N N ? 2 OA N N ? 2 QA N N ? 2 SA N N ? 2 VA N N ? 2 WA N N ? 2 YA N N ? 2 AB N N ? 2 DB N N ? 2 EB N N ? 2 GB N N ? 2 IB N N ? 2 LB N N ? 2 MB N N ? 2 OB N N ? 2 QB N N ? 2 TB N N ? 2 UB N N ? 2 WB N N ? 2 YB N N ? 2 BC N N ? 2 CC N N ? 2 EC N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7RMK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 2 ATP R 1 601 601 ATP ATP . DA 3 UTP R 1 602 602 UTP UTP . EA 3 UTP K 1 601 602 UTP UTP . FA 2 ATP K 1 602 601 ATP ATP . GA 2 ATP L 1 601 601 ATP ATP . HA 3 UTP M 1 601 602 UTP UTP . IA 2 ATP M 1 602 601 ATP ATP . JA 3 UTP M 1 603 602 UTP UTP . KA 2 ATP Y 1 601 601 ATP ATP . LA 3 UTP Y 1 602 602 UTP UTP . MA 3 UTP I 1 601 602 UTP UTP . NA 2 ATP I 1 602 601 ATP ATP . OA 2 ATP P 1 601 601 ATP ATP . PA 3 UTP U 1 601 602 UTP UTP . QA 2 ATP U 1 602 601 ATP ATP . RA 3 UTP U 1 603 602 UTP UTP . SA 2 ATP D 1 601 601 ATP ATP . TA 3 UTP D 1 602 602 UTP UTP . UA 3 UTP A 1 601 602 UTP UTP . VA 2 ATP A 1 602 601 ATP ATP . WA 2 ATP B 1 601 601 ATP ATP . XA 3 UTP C 1 601 602 UTP UTP . YA 2 ATP C 1 602 601 ATP ATP . ZA 3 UTP C 1 603 602 UTP UTP . AB 2 ATP Z 1 601 601 ATP ATP . BB 3 UTP Z 1 602 602 UTP UTP . CB 3 UTP J 1 601 602 UTP UTP . DB 2 ATP J 1 602 601 ATP ATP . EB 2 ATP Q 1 601 601 ATP ATP . FB 3 UTP V 1 601 602 UTP UTP . GB 2 ATP V 1 602 601 ATP ATP . HB 3 UTP V 1 603 602 UTP UTP . IB 2 ATP H 1 601 601 ATP ATP . JB 3 UTP H 1 602 602 UTP UTP . KB 3 UTP E 1 601 602 UTP UTP . LB 2 ATP E 1 602 601 ATP ATP . MB 2 ATP F 1 601 601 ATP ATP . NB 3 UTP G 1 601 602 UTP UTP . OB 2 ATP G 1 602 601 ATP ATP . PB 3 UTP G 1 603 602 UTP UTP . QB 2 ATP a 1 601 601 ATP ATP . RB 3 UTP a 1 602 602 UTP UTP . SB 3 UTP N 1 601 602 UTP UTP . TB 2 ATP N 1 602 601 ATP ATP . UB 2 ATP S 1 601 601 ATP ATP . VB 3 UTP W 1 601 602 UTP UTP . WB 2 ATP W 1 602 601 ATP ATP . XB 3 UTP W 1 603 602 UTP UTP . YB 2 ATP b 1 601 601 ATP ATP . ZB 3 UTP b 1 602 602 UTP UTP . AC 3 UTP O 1 601 602 UTP UTP . BC 2 ATP O 1 602 601 ATP ATP . CC 2 ATP T 1 601 601 ATP ATP . DC 3 UTP X 1 601 602 UTP UTP . EC 2 ATP X 1 602 601 ATP ATP . FC 3 UTP X 1 603 602 UTP UTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . VA 2 315.329 308.87 271.84 1 43.49 ? PG ATP 602 A 1 HETATM 2 O O1G ATP . . . VA 2 316.65 309.528 271.581 1 43.49 ? O1G ATP 602 A 1 HETATM 3 O O2G ATP . . . VA 2 315.489 307.448 272.289 1 43.49 ? O2G ATP 602 A 1 HETATM 4 O O3G ATP . . . VA 2 314.373 309.008 270.692 1 43.49 ? O3G ATP 602 A 1 HETATM 5 P PB ATP . . . VA 2 313.578 309.455 274.206 1 43.49 ? PB ATP 602 A 1 HETATM 6 O O1B ATP . . . VA 2 312.273 309.879 273.692 1 43.49 ? O1B ATP 602 A 1 HETATM 7 O O2B ATP . . . VA 2 314.128 310.125 275.414 1 43.49 ? O2B ATP 602 A 1 HETATM 8 O O3B ATP . . . VA 2 314.658 309.681 273.047 1 43.49 ? O3B ATP 602 A 1 HETATM 9 P PA ATP . . . VA 2 312.558 306.633 274.21 1 43.49 ? PA ATP 602 A 1 HETATM 10 O O1A ATP . . . VA 2 311.172 307.013 274.582 1 43.49 ? O1A ATP 602 A 1 HETATM 11 O O2A ATP . . . VA 2 312.77 306.066 272.849 1 43.49 ? O2A ATP 602 A 1 HETATM 12 O O3A ATP . . . VA 2 313.56 307.868 274.421 1 43.49 ? O3A ATP 602 A 1 HETATM 13 O O5' ATP . . . VA 2 313.127 305.609 275.292 1 43.49 ? O5' ATP 602 A 1 HETATM 14 C C5' ATP . . . VA 2 314.405 304.994 275.028 1 43.49 ? C5' ATP 602 A 1 HETATM 15 C C4' ATP . . . VA 2 314.391 303.589 275.597 1 43.49 ? C4' ATP 602 A 1 HETATM 16 O O4' ATP . . . VA 2 313.791 303.633 276.918 1 43.49 ? O4' ATP 602 A 1 HETATM 17 C C3' ATP . . . VA 2 313.568 302.56 274.801 1 43.49 ? C3' ATP 602 A 1 HETATM 18 O O3' ATP . . . VA 2 314.195 301.285 274.727 1 43.49 ? O3' ATP 602 A 1 HETATM 19 C C2' ATP . . . VA 2 312.264 302.468 275.604 1 43.49 ? C2' ATP 602 A 1 HETATM 20 O O2' ATP . . . VA 2 311.586 301.242 275.434 1 43.49 ? O2' ATP 602 A 1 HETATM 21 C C1' ATP . . . VA 2 312.8 302.636 277.023 1 43.49 ? C1' ATP 602 A 1 HETATM 22 N N9 ATP . . . VA 2 311.8 303.078 277.997 1 43.49 ? N9 ATP 602 A 1 HETATM 23 C C8 ATP . . . VA 2 311.058 304.22 277.928 1 43.49 ? C8 ATP 602 A 1 HETATM 24 N N7 ATP . . . VA 2 310.224 304.354 278.932 1 43.49 ? N7 ATP 602 A 1 HETATM 25 C C5 ATP . . . VA 2 310.443 303.227 279.709 1 43.49 ? C5 ATP 602 A 1 HETATM 26 C C6 ATP . . . VA 2 309.872 302.784 280.914 1 43.49 ? C6 ATP 602 A 1 HETATM 27 N N6 ATP . . . VA 2 308.927 303.446 281.575 1 43.49 ? N6 ATP 602 A 1 HETATM 28 N N1 ATP . . . VA 2 310.318 301.613 281.416 1 43.49 ? N1 ATP 602 A 1 HETATM 29 C C2 ATP . . . VA 2 311.272 300.949 280.752 1 43.49 ? C2 ATP 602 A 1 HETATM 30 N N3 ATP . . . VA 2 311.879 301.268 279.613 1 43.49 ? N3 ATP 602 A 1 HETATM 31 C C4 ATP . . . VA 2 311.412 302.433 279.141 1 43.49 ? C4 ATP 602 A 1 HETATM 32 H "H5'1" ATP . . . VA 2 315.128 305.537 275.442 1 43.49 ? "H5'1" ATP 602 A 1 HETATM 33 H "H5'2" ATP . . . VA 2 314.564 304.961 274.048 1 43.49 ? "H5'2" ATP 602 A 1 HETATM 34 H H4' ATP . . . VA 2 315.328 303.271 275.689 1 43.49 ? H4' ATP 602 A 1 HETATM 35 H H3' ATP . . . VA 2 313.404 302.906 273.879 1 43.49 ? H3' ATP 602 A 1 HETATM 36 H HO3' ATP . . . VA 2 314.446 301.149 273.929 1 43.49 ? HO3' ATP 602 A 1 HETATM 37 H H2' ATP . . . VA 2 311.648 303.226 275.372 1 43.49 ? H2' ATP 602 A 1 HETATM 38 H HO2' ATP . . . VA 2 312.125 300.664 275.119 1 43.49 ? HO2' ATP 602 A 1 HETATM 39 H H1' ATP . . . VA 2 313.214 301.792 277.323 1 43.49 ? H1' ATP 602 A 1 HETATM 40 H H8 ATP . . . VA 2 311.117 304.841 277.228 1 43.49 ? H8 ATP 602 A 1 HETATM 41 H HN61 ATP . . . VA 2 308.101 303.441 281.28 1 43.49 ? HN61 ATP 602 A 1 HETATM 42 H HN62 ATP . . . VA 2 309.137 303.882 282.306 1 43.49 ? HN62 ATP 602 A 1 HETATM 43 H H2 ATP . . . VA 2 311.549 300.137 281.146 1 43.49 ? H2 ATP 602 A 1 # _model_server_stats.io_time_ms 399 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 343 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #