data_7RMK
#
_model_server_result.job_id            fJlLd4tDWV9HEwlQif59hg 
_model_server_result.datetime_utc      '2024-11-16 11:45:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":603}' 
#
_entry.id    7RMK 
#
_exptl.entry_id    7RMK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RMK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 DA N N 
? 3 EA N N 
? 3 HA N N 
? 3 JA N N 
? 3 LA N N 
? 3 MA N N 
? 3 PA N N 
? 3 RA N N 
? 3 TA N N 
? 3 UA N N 
? 3 XA N N 
? 3 ZA N N 
? 3 BB N N 
? 3 CB N N 
? 3 FB N N 
? 3 HB N N 
? 3 JB N N 
? 3 KB N N 
? 3 NB N N 
? 3 PB N N 
? 3 RB N N 
? 3 SB N N 
? 3 VB N N 
? 3 XB N N 
? 3 ZB N N 
? 3 AC N N 
? 3 DC N N 
? 3 FC N N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 405 n n 
PA O2A UTP sing 406 n n 
PA O3A UTP sing 407 n n 
PA O5' UTP sing 408 n n 
O2A H2A UTP sing 409 n n 
O3A PB UTP sing 410 n n 
O5' C5' UTP sing 411 n n 
PB O1B UTP sing 412 n n 
PB O2B UTP doub 413 n n 
PB O3B UTP sing 414 n n 
O1B H1B UTP sing 415 n n 
O3B PG UTP sing 416 n n 
PG O1G UTP sing 417 n n 
PG O2G UTP doub 418 n n 
PG O3G UTP sing 419 n n 
O1G H1G UTP sing 420 n n 
O3G H3G UTP sing 421 n n 
C5' C4' UTP sing 422 n n 
C5' "H5'1" UTP sing 423 n n 
C5' "H5'2" UTP sing 424 n n 
C4' O4' UTP sing 425 n n 
C4' C3' UTP sing 426 n n 
C4' H4' UTP sing 427 n n 
O4' C1' UTP sing 428 n n 
C1' C2' UTP sing 429 n n 
C1' N1 UTP sing 430 n n 
C1' H1' UTP sing 431 n n 
C2' O2' UTP sing 432 n n 
C2' C3' UTP sing 433 n n 
C2' H2' UTP sing 434 n n 
O2' HA UTP sing 435 n n 
C3' O3' UTP sing 436 n n 
C3' H3' UTP sing 437 n n 
O3' HB UTP sing 438 n n 
N1 C6 UTP sing 439 n y 
N1 C2 UTP sing 440 n y 
C6 C5 UTP doub 441 n y 
C6 H6 UTP sing 442 n n 
C2 O2 UTP doub 443 n n 
C2 N3 UTP sing 444 n y 
N3 C4 UTP sing 445 n y 
N3 H3 UTP sing 446 n n 
C4 O4 UTP doub 447 n n 
C4 C5 UTP sing 448 n y 
C5 H5 UTP sing 449 n n 
#
_atom_sites.entry_id                     7RMK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 2 ATP R 1 601 601 ATP ATP . 
DA 3 UTP R 1 602 602 UTP UTP . 
EA 3 UTP K 1 601 602 UTP UTP . 
FA 2 ATP K 1 602 601 ATP ATP . 
GA 2 ATP L 1 601 601 ATP ATP . 
HA 3 UTP M 1 601 602 UTP UTP . 
IA 2 ATP M 1 602 601 ATP ATP . 
JA 3 UTP M 1 603 602 UTP UTP . 
KA 2 ATP Y 1 601 601 ATP ATP . 
LA 3 UTP Y 1 602 602 UTP UTP . 
MA 3 UTP I 1 601 602 UTP UTP . 
NA 2 ATP I 1 602 601 ATP ATP . 
OA 2 ATP P 1 601 601 ATP ATP . 
PA 3 UTP U 1 601 602 UTP UTP . 
QA 2 ATP U 1 602 601 ATP ATP . 
RA 3 UTP U 1 603 602 UTP UTP . 
SA 2 ATP D 1 601 601 ATP ATP . 
TA 3 UTP D 1 602 602 UTP UTP . 
UA 3 UTP A 1 601 602 UTP UTP . 
VA 2 ATP A 1 602 601 ATP ATP . 
WA 2 ATP B 1 601 601 ATP ATP . 
XA 3 UTP C 1 601 602 UTP UTP . 
YA 2 ATP C 1 602 601 ATP ATP . 
ZA 3 UTP C 1 603 602 UTP UTP . 
AB 2 ATP Z 1 601 601 ATP ATP . 
BB 3 UTP Z 1 602 602 UTP UTP . 
CB 3 UTP J 1 601 602 UTP UTP . 
DB 2 ATP J 1 602 601 ATP ATP . 
EB 2 ATP Q 1 601 601 ATP ATP . 
FB 3 UTP V 1 601 602 UTP UTP . 
GB 2 ATP V 1 602 601 ATP ATP . 
HB 3 UTP V 1 603 602 UTP UTP . 
IB 2 ATP H 1 601 601 ATP ATP . 
JB 3 UTP H 1 602 602 UTP UTP . 
KB 3 UTP E 1 601 602 UTP UTP . 
LB 2 ATP E 1 602 601 ATP ATP . 
MB 2 ATP F 1 601 601 ATP ATP . 
NB 3 UTP G 1 601 602 UTP UTP . 
OB 2 ATP G 1 602 601 ATP ATP . 
PB 3 UTP G 1 603 602 UTP UTP . 
QB 2 ATP a 1 601 601 ATP ATP . 
RB 3 UTP a 1 602 602 UTP UTP . 
SB 3 UTP N 1 601 602 UTP UTP . 
TB 2 ATP N 1 602 601 ATP ATP . 
UB 2 ATP S 1 601 601 ATP ATP . 
VB 3 UTP W 1 601 602 UTP UTP . 
WB 2 ATP W 1 602 601 ATP ATP . 
XB 3 UTP W 1 603 602 UTP UTP . 
YB 2 ATP b 1 601 601 ATP ATP . 
ZB 3 UTP b 1 602 602 UTP UTP . 
AC 3 UTP O 1 601 602 UTP UTP . 
BC 2 ATP O 1 602 601 ATP ATP . 
CC 2 ATP T 1 601 601 ATP ATP . 
DC 3 UTP X 1 601 602 UTP UTP . 
EC 2 ATP X 1 602 601 ATP ATP . 
FC 3 UTP X 1 603 602 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . JA 3 281.409 179.126 248.323 1 33.26 ? PA UTP 603 M 1 
HETATM 2 O O1A UTP . . . JA 3 281.421 177.991 247.36 1 33.26 ? O1A UTP 603 M 1 
HETATM 3 O O2A UTP . . . JA 3 280.275 179.993 248.765 1 33.26 ? O2A UTP 603 M 1 
HETATM 4 O O3A UTP . . . JA 3 282.81 179.919 248.2 1 33.26 ? O3A UTP 603 M 1 
HETATM 5 O O5' UTP . . . JA 3 281.926 178.423 249.664 1 33.26 ? O5' UTP 603 M 1 
HETATM 6 P PB UTP . . . JA 3 284.365 179.531 248.331 1 33.26 ? PB UTP 603 M 1 
HETATM 7 O O1B UTP . . . JA 3 284.867 179.698 249.721 1 33.26 ? O1B UTP 603 M 1 
HETATM 8 O O2B UTP . . . JA 3 284.561 178.223 247.658 1 33.26 ? O2B UTP 603 M 1 
HETATM 9 O O3B UTP . . . JA 3 285.006 180.649 247.38 1 33.26 ? O3B UTP 603 M 1 
HETATM 10 P PG UTP . . . JA 3 284.451 181.653 246.244 1 33.26 ? PG UTP 603 M 1 
HETATM 11 O O1G UTP . . . JA 3 285.674 182.299 245.662 1 33.26 ? O1G UTP 603 M 1 
HETATM 12 O O2G UTP . . . JA 3 283.704 180.837 245.234 1 33.26 ? O2G UTP 603 M 1 
HETATM 13 O O3G UTP . . . JA 3 283.566 182.64 246.942 1 33.26 ? O3G UTP 603 M 1 
HETATM 14 C C5' UTP . . . JA 3 281.208 178.523 250.912 1 33.26 ? C5' UTP 603 M 1 
HETATM 15 C C4' UTP . . . JA 3 280.854 177.14 251.406 1 33.26 ? C4' UTP 603 M 1 
HETATM 16 O O4' UTP . . . JA 3 279.644 177.233 252.197 1 33.26 ? O4' UTP 603 M 1 
HETATM 17 C C1' UTP . . . JA 3 278.719 176.232 251.833 1 33.26 ? C1' UTP 603 M 1 
HETATM 18 C C2' UTP . . . JA 3 279.509 175.191 251.029 1 33.26 ? C2' UTP 603 M 1 
HETATM 19 O O2' UTP . . . JA 3 280.149 174.256 251.87 1 33.26 ? O2' UTP 603 M 1 
HETATM 20 C C3' UTP . . . JA 3 280.552 176.079 250.331 1 33.26 ? C3' UTP 603 M 1 
HETATM 21 O O3' UTP . . . JA 3 281.713 175.341 249.969 1 33.26 ? O3' UTP 603 M 1 
HETATM 22 N N1 UTP . . . JA 3 277.592 176.862 251.08 1 33.26 ? N1 UTP 603 M 1 
HETATM 23 C C6 UTP . . . JA 3 277.79 177.888 250.181 1 33.26 ? C6 UTP 603 M 1 
HETATM 24 C C2 UTP . . . JA 3 276.316 176.378 251.318 1 33.26 ? C2 UTP 603 M 1 
HETATM 25 O O2 UTP . . . JA 3 276.102 175.468 252.11 1 33.26 ? O2 UTP 603 M 1 
HETATM 26 N N3 UTP . . . JA 3 275.308 176.997 250.608 1 33.26 ? N3 UTP 603 M 1 
HETATM 27 C C4 UTP . . . JA 3 275.438 178.033 249.699 1 33.26 ? C4 UTP 603 M 1 
HETATM 28 O O4 UTP . . . JA 3 274.44 178.471 249.115 1 33.26 ? O4 UTP 603 M 1 
HETATM 29 C C5 UTP . . . JA 3 276.79 178.468 249.491 1 33.26 ? C5 UTP 603 M 1 
HETATM 30 H H4' UTP . . . JA 3 281.584 176.833 251.993 1 0 ? H4' UTP 603 M 1 
HETATM 31 H H1' UTP . . . JA 3 278.381 175.827 252.661 1 0 ? H1' UTP 603 M 1 
HETATM 32 H H2' UTP . . . JA 3 278.927 174.725 250.381 1 0 ? H2' UTP 603 M 1 
HETATM 33 H H3' UTP . . . JA 3 280.162 176.504 249.514 1 0 ? H3' UTP 603 M 1 
HETATM 34 H H6 UTP . . . JA 3 278.666 178.192 250.041 1 0 ? H6 UTP 603 M 1 
HETATM 35 H H3 UTP . . . JA 3 274.484 176.683 250.742 1 0 ? H3 UTP 603 M 1 
HETATM 36 H H5 UTP . . . JA 3 276.965 179.162 248.887 1 0 ? H5 UTP 603 M 1 
#
_model_server_stats.io_time_ms              538 
_model_server_stats.parse_time_ms           72 
_model_server_stats.create_model_time_ms    615 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#