data_7RMK
#
_model_server_result.job_id            64zQOLEat2tjUHLlMSQ8ag 
_model_server_result.datetime_utc      '2024-11-16 11:26:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":603}' 
#
_entry.id    7RMK 
#
_exptl.entry_id    7RMK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RMK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 DA N N 
? 3 EA N N 
? 3 HA N N 
? 3 JA N N 
? 3 LA N N 
? 3 MA N N 
? 3 PA N N 
? 3 RA N N 
? 3 TA N N 
? 3 UA N N 
? 3 XA N N 
? 3 ZA N N 
? 3 BB N N 
? 3 CB N N 
? 3 FB N N 
? 3 HB N N 
? 3 JB N N 
? 3 KB N N 
? 3 NB N N 
? 3 PB N N 
? 3 RB N N 
? 3 SB N N 
? 3 VB N N 
? 3 XB N N 
? 3 ZB N N 
? 3 AC N N 
? 3 DC N N 
? 3 FC N N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 405 n n 
PA O2A UTP sing 406 n n 
PA O3A UTP sing 407 n n 
PA O5' UTP sing 408 n n 
O2A H2A UTP sing 409 n n 
O3A PB UTP sing 410 n n 
O5' C5' UTP sing 411 n n 
PB O1B UTP sing 412 n n 
PB O2B UTP doub 413 n n 
PB O3B UTP sing 414 n n 
O1B H1B UTP sing 415 n n 
O3B PG UTP sing 416 n n 
PG O1G UTP sing 417 n n 
PG O2G UTP doub 418 n n 
PG O3G UTP sing 419 n n 
O1G H1G UTP sing 420 n n 
O3G H3G UTP sing 421 n n 
C5' C4' UTP sing 422 n n 
C5' "H5'1" UTP sing 423 n n 
C5' "H5'2" UTP sing 424 n n 
C4' O4' UTP sing 425 n n 
C4' C3' UTP sing 426 n n 
C4' H4' UTP sing 427 n n 
O4' C1' UTP sing 428 n n 
C1' C2' UTP sing 429 n n 
C1' N1 UTP sing 430 n n 
C1' H1' UTP sing 431 n n 
C2' O2' UTP sing 432 n n 
C2' C3' UTP sing 433 n n 
C2' H2' UTP sing 434 n n 
O2' HA UTP sing 435 n n 
C3' O3' UTP sing 436 n n 
C3' H3' UTP sing 437 n n 
O3' HB UTP sing 438 n n 
N1 C6 UTP sing 439 n y 
N1 C2 UTP sing 440 n y 
C6 C5 UTP doub 441 n y 
C6 H6 UTP sing 442 n n 
C2 O2 UTP doub 443 n n 
C2 N3 UTP sing 444 n y 
N3 C4 UTP sing 445 n y 
N3 H3 UTP sing 446 n n 
C4 O4 UTP doub 447 n n 
C4 C5 UTP sing 448 n y 
C5 H5 UTP sing 449 n n 
#
_atom_sites.entry_id                     7RMK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 2 ATP R 1 601 601 ATP ATP . 
DA 3 UTP R 1 602 602 UTP UTP . 
EA 3 UTP K 1 601 602 UTP UTP . 
FA 2 ATP K 1 602 601 ATP ATP . 
GA 2 ATP L 1 601 601 ATP ATP . 
HA 3 UTP M 1 601 602 UTP UTP . 
IA 2 ATP M 1 602 601 ATP ATP . 
JA 3 UTP M 1 603 602 UTP UTP . 
KA 2 ATP Y 1 601 601 ATP ATP . 
LA 3 UTP Y 1 602 602 UTP UTP . 
MA 3 UTP I 1 601 602 UTP UTP . 
NA 2 ATP I 1 602 601 ATP ATP . 
OA 2 ATP P 1 601 601 ATP ATP . 
PA 3 UTP U 1 601 602 UTP UTP . 
QA 2 ATP U 1 602 601 ATP ATP . 
RA 3 UTP U 1 603 602 UTP UTP . 
SA 2 ATP D 1 601 601 ATP ATP . 
TA 3 UTP D 1 602 602 UTP UTP . 
UA 3 UTP A 1 601 602 UTP UTP . 
VA 2 ATP A 1 602 601 ATP ATP . 
WA 2 ATP B 1 601 601 ATP ATP . 
XA 3 UTP C 1 601 602 UTP UTP . 
YA 2 ATP C 1 602 601 ATP ATP . 
ZA 3 UTP C 1 603 602 UTP UTP . 
AB 2 ATP Z 1 601 601 ATP ATP . 
BB 3 UTP Z 1 602 602 UTP UTP . 
CB 3 UTP J 1 601 602 UTP UTP . 
DB 2 ATP J 1 602 601 ATP ATP . 
EB 2 ATP Q 1 601 601 ATP ATP . 
FB 3 UTP V 1 601 602 UTP UTP . 
GB 2 ATP V 1 602 601 ATP ATP . 
HB 3 UTP V 1 603 602 UTP UTP . 
IB 2 ATP H 1 601 601 ATP ATP . 
JB 3 UTP H 1 602 602 UTP UTP . 
KB 3 UTP E 1 601 602 UTP UTP . 
LB 2 ATP E 1 602 601 ATP ATP . 
MB 2 ATP F 1 601 601 ATP ATP . 
NB 3 UTP G 1 601 602 UTP UTP . 
OB 2 ATP G 1 602 601 ATP ATP . 
PB 3 UTP G 1 603 602 UTP UTP . 
QB 2 ATP a 1 601 601 ATP ATP . 
RB 3 UTP a 1 602 602 UTP UTP . 
SB 3 UTP N 1 601 602 UTP UTP . 
TB 2 ATP N 1 602 601 ATP ATP . 
UB 2 ATP S 1 601 601 ATP ATP . 
VB 3 UTP W 1 601 602 UTP UTP . 
WB 2 ATP W 1 602 601 ATP ATP . 
XB 3 UTP W 1 603 602 UTP UTP . 
YB 2 ATP b 1 601 601 ATP ATP . 
ZB 3 UTP b 1 602 602 UTP UTP . 
AC 3 UTP O 1 601 602 UTP UTP . 
BC 2 ATP O 1 602 601 ATP ATP . 
CC 2 ATP T 1 601 601 ATP ATP . 
DC 3 UTP X 1 601 602 UTP UTP . 
EC 2 ATP X 1 602 601 ATP ATP . 
FC 3 UTP X 1 603 602 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . RA 3 321.409 243.56 309.41 1 33.26 ? PA UTP 603 U 1 
HETATM 2 O O1A UTP . . . RA 3 321.111 242.323 308.637 1 33.26 ? O1A UTP 603 U 1 
HETATM 3 O O2A UTP . . . RA 3 320.498 244.673 309.819 1 33.26 ? O2A UTP 603 U 1 
HETATM 4 O O3A UTP . . . RA 3 322.897 244.057 309.032 1 33.26 ? O3A UTP 603 U 1 
HETATM 5 O O5' UTP . . . RA 3 321.959 242.961 310.788 1 33.26 ? O5' UTP 603 U 1 
HETATM 6 P PB UTP . . . RA 3 324.369 243.411 309.073 1 33.26 ? PB UTP 603 U 1 
HETATM 7 O O1B UTP . . . RA 3 325.057 243.668 310.366 1 33.26 ? O1B UTP 603 U 1 
HETATM 8 O O2B UTP . . . RA 3 324.258 242.01 308.594 1 33.26 ? O2B UTP 603 U 1 
HETATM 9 O O3B UTP . . . RA 3 325.069 244.252 307.904 1 33.26 ? O3B UTP 603 U 1 
HETATM 10 P PG UTP . . . RA 3 324.557 245.179 306.685 1 33.26 ? PG UTP 603 U 1 
HETATM 11 O O1G UTP . . . RA 3 325.791 245.504 305.896 1 33.26 ? O1G UTP 603 U 1 
HETATM 12 O O2G UTP . . . RA 3 323.566 244.385 305.889 1 33.26 ? O2G UTP 603 U 1 
HETATM 13 O O3G UTP . . . RA 3 323.942 246.397 307.303 1 33.26 ? O3G UTP 603 U 1 
HETATM 14 C C5' UTP . . . RA 3 321.424 243.359 312.068 1 33.26 ? C5' UTP 603 U 1 
HETATM 15 C C4' UTP . . . RA 3 320.906 242.144 312.802 1 33.26 ? C4' UTP 603 U 1 
HETATM 16 O O4' UTP . . . RA 3 319.834 242.565 313.681 1 33.26 ? O4' UTP 603 U 1 
HETATM 17 C C1' UTP . . . RA 3 318.716 241.712 313.565 1 33.26 ? C1' UTP 603 U 1 
HETATM 18 C C2' UTP . . . RA 3 319.216 240.445 312.86 1 33.26 ? C2' UTP 603 U 1 
HETATM 19 O O2' UTP . . . RA 3 319.787 239.529 313.77 1 33.26 ? O2' UTP 603 U 1 
HETATM 20 C C3' UTP . . . RA 3 320.301 241.022 311.937 1 33.26 ? C3' UTP 603 U 1 
HETATM 21 O O3' UTP . . . RA 3 321.268 240.041 311.584 1 33.26 ? O3' UTP 603 U 1 
HETATM 22 N N1 UTP . . . RA 3 317.628 242.432 312.836 1 33.26 ? N1 UTP 603 U 1 
HETATM 23 C C6 UTP . . . RA 3 317.886 243.273 311.775 1 33.26 ? C6 UTP 603 U 1 
HETATM 24 C C2 UTP . . . RA 3 316.327 242.228 313.266 1 33.26 ? C2 UTP 603 U 1 
HETATM 25 O O2 UTP . . . RA 3 316.062 241.488 314.206 1 33.26 ? O2 UTP 603 U 1 
HETATM 26 N N3 UTP . . . RA 3 315.36 242.921 312.569 1 33.26 ? N3 UTP 603 U 1 
HETATM 27 C C4 UTP . . . RA 3 315.55 243.782 311.502 1 33.26 ? C4 UTP 603 U 1 
HETATM 28 O O4 UTP . . . RA 3 314.577 244.314 310.956 1 33.26 ? O4 UTP 603 U 1 
HETATM 29 C C5 UTP . . . RA 3 316.921 243.928 311.102 1 33.26 ? C5 UTP 603 U 1 
HETATM 30 H H4' UTP . . . RA 3 321.64 241.791 313.357 1 0 ? H4' UTP 603 U 1 
HETATM 31 H H1' UTP . . . RA 3 318.418 241.492 314.474 1 0 ? H1' UTP 603 U 1 
HETATM 32 H H2' UTP . . . RA 3 318.49 240.01 312.351 1 0 ? H2' UTP 603 U 1 
HETATM 33 H H3' UTP . . . RA 3 319.892 241.398 311.105 1 0 ? H3' UTP 603 U 1 
HETATM 34 H H6 UTP . . . RA 3 318.777 243.388 311.506 1 0 ? H6 UTP 603 U 1 
HETATM 35 H H3 UTP . . . RA 3 314.517 242.785 312.828 1 0 ? H3 UTP 603 U 1 
HETATM 36 H H5 UTP . . . RA 3 317.136 244.49 310.384 1 0 ? H5 UTP 603 U 1 
#
_model_server_stats.io_time_ms              278 
_model_server_stats.parse_time_ms           328 
_model_server_stats.create_model_time_ms    691 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           36 
#