data_7RMV
#
_model_server_result.job_id            A5PwpZGMCUiUpG5Ev7dWgQ 
_model_server_result.datetime_utc      '2024-12-19 03:59:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    7RMV 
#
_exptl.entry_id    7RMV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RMV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7RMV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 3 UTP A 1 602 602 UTP UTP . 
K 2 ATP B 1 601 601 ATP ATP . 
L 3 UTP B 1 602 602 UTP UTP . 
M 2 ATP C 1 601 601 ATP ATP . 
N 3 UTP C 1 602 602 UTP UTP . 
O 2 ATP D 1 601 601 ATP ATP . 
P 3 UTP D 1 602 602 UTP UTP . 
Q 2 ATP E 1 601 601 ATP ATP . 
R 3 UTP E 1 602 602 UTP UTP . 
S 2 ATP F 1 601 601 ATP ATP . 
T 3 UTP F 1 602 602 UTP UTP . 
U 2 ATP G 1 601 601 ATP ATP . 
V 3 UTP G 1 602 602 UTP UTP . 
W 2 ATP H 1 601 601 ATP ATP . 
X 3 UTP H 1 602 602 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 2 169.964 152.226 92.402 1 43.49 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . K 2 168.658 152.462 93.099 1 43.49 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . K 2 169.877 152.517 90.934 1 43.49 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . K 2 170.54 150.871 92.687 1 43.49 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . K 2 172.364 154.01 92.647 1 43.49 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . K 2 173.476 153.184 93.128 1 43.49 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . K 2 172.23 155.402 93.151 1 43.49 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . K 2 171 153.268 93.036 1 43.49 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . K 2 173.203 153.348 89.843 1 43.49 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . K 2 174.654 153.332 90.159 1 43.49 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . K 2 172.57 152.053 89.469 1 43.49 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . K 2 172.37 154.005 91.045 1 43.49 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . K 2 172.933 154.411 88.687 1 43.49 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . K 2 171.607 154.468 88.123 1 43.49 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . K 2 171.722 154.823 86.654 1 43.49 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . K 2 172.689 155.897 86.512 1 43.49 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . K 2 172.222 153.693 85.735 1 43.49 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . K 2 171.541 153.649 84.486 1 43.49 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . K 2 173.699 154.048 85.525 1 43.49 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . K 2 174.237 153.526 84.33 1 43.49 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . K 2 173.616 155.571 85.503 1 43.49 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . K 2 174.882 156.247 85.801 1 43.49 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . K 2 175.622 156.104 86.938 1 43.49 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . K 2 176.721 156.82 86.928 1 43.49 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . K 2 176.691 157.477 85.707 1 43.49 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . K 2 177.571 158.387 85.102 1 43.49 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . K 2 178.701 158.812 85.66 1 43.49 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . K 2 177.238 158.847 83.876 1 43.49 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . K 2 176.101 158.422 83.316 1 43.49 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . K 2 175.199 157.568 83.79 1 43.49 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . K 2 175.559 157.131 85.005 1 43.49 ? C4 ATP 601 B 1 
HETATM 32 H "H5'1" ATP . . . K 2 171.066 155.145 88.61 1 43.49 ? "H5'1" ATP 601 B 1 
HETATM 33 H "H5'2" ATP . . . K 2 171.163 153.585 88.223 1 43.49 ? "H5'2" ATP 601 B 1 
HETATM 34 H H4' ATP . . . K 2 170.84 155.15 86.333 1 43.49 ? H4' ATP 601 B 1 
HETATM 35 H H3' ATP . . . K 2 172.121 152.815 86.201 1 43.49 ? H3' ATP 601 B 1 
HETATM 36 H HO3' ATP . . . K 2 171.058 152.952 84.462 1 43.49 ? HO3' ATP 601 B 1 
HETATM 37 H H2' ATP . . . K 2 174.254 153.739 86.304 1 43.49 ? H2' ATP 601 B 1 
HETATM 38 H HO2' ATP . . . K 2 173.601 153.319 83.803 1 43.49 ? HO2' ATP 601 B 1 
HETATM 39 H H1' ATP . . . K 2 173.27 155.872 84.63 1 43.49 ? H1' ATP 601 B 1 
HETATM 40 H H8 ATP . . . K 2 175.387 155.54 87.648 1 43.49 ? H8 ATP 601 B 1 
HETATM 41 H HN61 ATP . . . K 2 179.401 158.285 85.69 1 43.49 ? HN61 ATP 601 B 1 
HETATM 42 H HN62 ATP . . . K 2 178.738 159.623 85.995 1 43.49 ? HN62 ATP 601 B 1 
HETATM 43 H H2 ATP . . . K 2 175.915 158.775 82.46 1 43.49 ? H2 ATP 601 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    97 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#