data_7RMV
#
_model_server_result.job_id            KJ3scRj8_F0LXIFrd6GIMA 
_model_server_result.datetime_utc      '2024-12-19 03:49:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":601}' 
#
_entry.id    7RMV 
#
_exptl.entry_id    7RMV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RMV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7RMV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 3 UTP A 1 602 602 UTP UTP . 
K 2 ATP B 1 601 601 ATP ATP . 
L 3 UTP B 1 602 602 UTP UTP . 
M 2 ATP C 1 601 601 ATP ATP . 
N 3 UTP C 1 602 602 UTP UTP . 
O 2 ATP D 1 601 601 ATP ATP . 
P 3 UTP D 1 602 602 UTP UTP . 
Q 2 ATP E 1 601 601 ATP ATP . 
R 3 UTP E 1 602 602 UTP UTP . 
S 2 ATP F 1 601 601 ATP ATP . 
T 3 UTP F 1 602 602 UTP UTP . 
U 2 ATP G 1 601 601 ATP ATP . 
V 3 UTP G 1 602 602 UTP UTP . 
W 2 ATP H 1 601 601 ATP ATP . 
X 3 UTP H 1 602 602 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . U 2 166.054 152.209 243.648 1 43.49 ? PG ATP 601 G 1 
HETATM 2 O O1G ATP . . . U 2 167.358 152.446 242.949 1 43.49 ? O1G ATP 601 G 1 
HETATM 3 O O2G ATP . . . U 2 166.143 152.501 245.116 1 43.49 ? O2G ATP 601 G 1 
HETATM 4 O O3G ATP . . . U 2 165.478 150.854 243.364 1 43.49 ? O3G ATP 601 G 1 
HETATM 5 P PB ATP . . . U 2 163.652 153.992 243.405 1 43.49 ? PB ATP 601 G 1 
HETATM 6 O O1B ATP . . . U 2 162.54 153.165 242.926 1 43.49 ? O1B ATP 601 G 1 
HETATM 7 O O2B ATP . . . U 2 163.784 155.384 242.901 1 43.49 ? O2B ATP 601 G 1 
HETATM 8 O O3B ATP . . . U 2 165.016 153.251 243.014 1 43.49 ? O3B ATP 601 G 1 
HETATM 9 P PA ATP . . . U 2 162.817 153.33 246.21 1 43.49 ? PA ATP 601 G 1 
HETATM 10 O O1A ATP . . . U 2 161.366 153.312 245.897 1 43.49 ? O1A ATP 601 G 1 
HETATM 11 O O2A ATP . . . U 2 163.451 152.036 246.584 1 43.49 ? O2A ATP 601 G 1 
HETATM 12 O O3A ATP . . . U 2 163.648 153.988 245.007 1 43.49 ? O3A ATP 601 G 1 
HETATM 13 O O5' ATP . . . U 2 163.087 154.393 247.366 1 43.49 ? O5' ATP 601 G 1 
HETATM 14 C C5' ATP . . . U 2 164.415 154.451 247.929 1 43.49 ? C5' ATP 601 G 1 
HETATM 15 C C4' ATP . . . U 2 164.301 154.806 249.398 1 43.49 ? C4' ATP 601 G 1 
HETATM 16 O O4' ATP . . . U 2 163.333 155.88 249.541 1 43.49 ? O4' ATP 601 G 1 
HETATM 17 C C3' ATP . . . U 2 163.803 153.676 250.317 1 43.49 ? C3' ATP 601 G 1 
HETATM 18 O O3' ATP . . . U 2 164.486 153.633 251.565 1 43.49 ? O3' ATP 601 G 1 
HETATM 19 C C2' ATP . . . U 2 162.326 154.03 250.528 1 43.49 ? C2' ATP 601 G 1 
HETATM 20 O O2' ATP . . . U 2 161.79 153.507 251.725 1 43.49 ? O2' ATP 601 G 1 
HETATM 21 C C1' ATP . . . U 2 162.407 155.554 250.55 1 43.49 ? C1' ATP 601 G 1 
HETATM 22 N N9 ATP . . . U 2 161.141 156.228 250.254 1 43.49 ? N9 ATP 601 G 1 
HETATM 23 C C8 ATP . . . U 2 160.399 156.084 249.118 1 43.49 ? C8 ATP 601 G 1 
HETATM 24 N N7 ATP . . . U 2 159.3 156.799 249.129 1 43.49 ? N7 ATP 601 G 1 
HETATM 25 C C5 ATP . . . U 2 159.331 157.457 250.35 1 43.49 ? C5 ATP 601 G 1 
HETATM 26 C C6 ATP . . . U 2 158.451 158.366 250.956 1 43.49 ? C6 ATP 601 G 1 
HETATM 27 N N6 ATP . . . U 2 157.32 158.79 250.4 1 43.49 ? N6 ATP 601 G 1 
HETATM 28 N N1 ATP . . . U 2 158.785 158.827 252.182 1 43.49 ? N1 ATP 601 G 1 
HETATM 29 C C2 ATP . . . U 2 159.924 158.402 252.74 1 43.49 ? C2 ATP 601 G 1 
HETATM 30 N N3 ATP . . . U 2 160.825 157.549 252.265 1 43.49 ? N3 ATP 601 G 1 
HETATM 31 C C4 ATP . . . U 2 160.464 157.111 251.051 1 43.49 ? C4 ATP 601 G 1 
HETATM 32 H "H5'1" ATP . . . U 2 164.955 155.129 247.44 1 43.49 ? "H5'1" ATP 601 G 1 
HETATM 33 H "H5'2" ATP . . . U 2 164.859 153.569 247.828 1 43.49 ? "H5'2" ATP 601 G 1 
HETATM 34 H H4' ATP . . . U 2 165.183 155.135 249.717 1 43.49 ? H4' ATP 601 G 1 
HETATM 35 H H3' ATP . . . U 2 163.905 152.798 249.851 1 43.49 ? H3' ATP 601 G 1 
HETATM 36 H HO3' ATP . . . U 2 164.969 152.937 251.588 1 43.49 ? HO3' ATP 601 G 1 
HETATM 37 H H2' ATP . . . U 2 161.77 153.721 249.751 1 43.49 ? H2' ATP 601 G 1 
HETATM 38 H HO2' ATP . . . U 2 162.427 153.301 252.251 1 43.49 ? HO2' ATP 601 G 1 
HETATM 39 H H1' ATP . . . U 2 162.755 155.855 251.423 1 43.49 ? H1' ATP 601 G 1 
HETATM 40 H H8 ATP . . . U 2 160.634 155.521 248.408 1 43.49 ? H8 ATP 601 G 1 
HETATM 41 H HN61 ATP . . . U 2 156.621 158.263 250.37 1 43.49 ? HN61 ATP 601 G 1 
HETATM 42 H HN62 ATP . . . U 2 157.282 159.601 250.064 1 43.49 ? HN62 ATP 601 G 1 
HETATM 43 H H2 ATP . . . U 2 160.11 158.756 253.596 1 43.49 ? H2 ATP 601 G 1 
#
_model_server_stats.io_time_ms              336 
_model_server_stats.parse_time_ms           64 
_model_server_stats.create_model_time_ms    80 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#