data_7RMV
#
_model_server_result.job_id            DZY2APEbzqsAYE55Q_n7cQ 
_model_server_result.datetime_utc      '2024-11-01 03:35:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rmv 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":602}' 
#
_entry.id    7RMV 
#
_exptl.entry_id    7RMV 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RMV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 405 n n 
PA O2A UTP sing 406 n n 
PA O3A UTP sing 407 n n 
PA O5' UTP sing 408 n n 
O2A H2A UTP sing 409 n n 
O3A PB UTP sing 410 n n 
O5' C5' UTP sing 411 n n 
PB O1B UTP sing 412 n n 
PB O2B UTP doub 413 n n 
PB O3B UTP sing 414 n n 
O1B H1B UTP sing 415 n n 
O3B PG UTP sing 416 n n 
PG O1G UTP sing 417 n n 
PG O2G UTP doub 418 n n 
PG O3G UTP sing 419 n n 
O1G H1G UTP sing 420 n n 
O3G H3G UTP sing 421 n n 
C5' C4' UTP sing 422 n n 
C5' "H5'1" UTP sing 423 n n 
C5' "H5'2" UTP sing 424 n n 
C4' O4' UTP sing 425 n n 
C4' C3' UTP sing 426 n n 
C4' H4' UTP sing 427 n n 
O4' C1' UTP sing 428 n n 
C1' C2' UTP sing 429 n n 
C1' N1 UTP sing 430 n n 
C1' H1' UTP sing 431 n n 
C2' O2' UTP sing 432 n n 
C2' C3' UTP sing 433 n n 
C2' H2' UTP sing 434 n n 
O2' HA UTP sing 435 n n 
C3' O3' UTP sing 436 n n 
C3' H3' UTP sing 437 n n 
O3' HB UTP sing 438 n n 
N1 C6 UTP sing 439 n y 
N1 C2 UTP sing 440 n y 
C6 C5 UTP doub 441 n y 
C6 H6 UTP sing 442 n n 
C2 O2 UTP doub 443 n n 
C2 N3 UTP sing 444 n y 
N3 C4 UTP sing 445 n y 
N3 H3 UTP sing 446 n n 
C4 O4 UTP doub 447 n n 
C4 C5 UTP sing 448 n y 
C5 H5 UTP sing 449 n n 
#
_atom_sites.entry_id                     7RMV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 3 UTP A 1 602 602 UTP UTP . 
K 2 ATP B 1 601 601 ATP ATP . 
L 3 UTP B 1 602 602 UTP UTP . 
M 2 ATP C 1 601 601 ATP ATP . 
N 3 UTP C 1 602 602 UTP UTP . 
O 2 ATP D 1 601 601 ATP ATP . 
P 3 UTP D 1 602 602 UTP UTP . 
Q 2 ATP E 1 601 601 ATP ATP . 
R 3 UTP E 1 602 602 UTP UTP . 
S 2 ATP F 1 601 601 ATP ATP . 
T 3 UTP F 1 602 602 UTP UTP . 
U 2 ATP G 1 601 601 ATP ATP . 
V 3 UTP G 1 602 602 UTP UTP . 
W 2 ATP H 1 601 601 ATP ATP . 
X 3 UTP H 1 602 602 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . N 3 167.134 155.424 128.481 1 33.26 ? PA UTP 602 C 1 
HETATM 2 O O1A UTP . . . N 3 166.783 156.363 127.382 1 33.26 ? O1A UTP 602 C 1 
HETATM 3 O O2A UTP . . . N 3 166.263 154.82 129.536 1 33.26 ? O2A UTP 602 C 1 
HETATM 4 O O3A UTP . . . N 3 168.621 155.772 129.001 1 33.26 ? O3A UTP 602 C 1 
HETATM 5 O O5' UTP . . . N 3 167.712 154.17 127.672 1 33.26 ? O5' UTP 602 C 1 
HETATM 6 P PB UTP . . . N 3 170.077 155.881 128.329 1 33.26 ? PB UTP 602 C 1 
HETATM 7 O O1B UTP . . . N 3 170.813 154.587 128.375 1 33.26 ? O1B UTP 602 C 1 
HETATM 8 O O2B UTP . . . N 3 169.919 156.561 127.019 1 33.26 ? O2B UTP 602 C 1 
HETATM 9 O O3B UTP . . . N 3 170.761 156.932 129.323 1 33.26 ? O3B UTP 602 C 1 
HETATM 10 P PG UTP . . . N 3 170.235 157.979 130.435 1 33.26 ? PG UTP 602 C 1 
HETATM 11 O O1G UTP . . . N 3 171.45 158.753 130.851 1 33.26 ? O1G UTP 602 C 1 
HETATM 12 O O2G UTP . . . N 3 169.2 158.852 129.788 1 33.26 ? O2G UTP 602 C 1 
HETATM 13 O O3G UTP . . . N 3 169.668 157.165 131.556 1 33.26 ? O3G UTP 602 C 1 
HETATM 14 C C5' UTP . . . N 3 167.228 152.828 127.881 1 33.26 ? C5' UTP 602 C 1 
HETATM 15 C C4' UTP . . . N 3 166.703 152.268 126.579 1 33.26 ? C4' UTP 602 C 1 
HETATM 16 O O4' UTP . . . N 3 165.669 151.299 126.882 1 33.26 ? O4' UTP 602 C 1 
HETATM 17 C C1' UTP . . . N 3 164.527 151.504 126.078 1 33.26 ? C1' UTP 602 C 1 
HETATM 18 C C2' UTP . . . N 3 164.976 152.409 124.923 1 33.26 ? C2' UTP 602 C 1 
HETATM 19 O O2' UTP . . . N 3 165.552 151.667 123.869 1 33.26 ? O2' UTP 602 C 1 
HETATM 20 C C3' UTP . . . N 3 166.045 153.272 125.613 1 33.26 ? C3' UTP 602 C 1 
HETATM 21 O O3' UTP . . . N 3 166.976 153.8 124.679 1 33.26 ? O3' UTP 602 C 1 
HETATM 22 N N1 UTP . . . N 3 163.434 152.08 126.921 1 33.26 ? N1 UTP 602 C 1 
HETATM 23 C C6 UTP . . . N 3 163.681 153.01 127.908 1 33.26 ? C6 UTP 602 C 1 
HETATM 24 C C2 UTP . . . N 3 162.144 151.639 126.679 1 33.26 ? C2 UTP 602 C 1 
HETATM 25 O O2 UTP . . . N 3 161.888 150.814 125.81 1 33.26 ? O2 UTP 602 C 1 
HETATM 26 N N3 UTP . . . N 3 161.173 152.193 127.485 1 33.26 ? N3 UTP 602 C 1 
HETATM 27 C C4 UTP . . . N 3 161.349 153.124 128.494 1 33.26 ? C4 UTP 602 C 1 
HETATM 28 O O4 UTP . . . N 3 160.372 153.551 129.123 1 33.26 ? O4 UTP 602 C 1 
HETATM 29 C C5 UTP . . . N 3 162.71 153.542 128.674 1 33.26 ? C5 UTP 602 C 1 
HETATM 30 H H4' UTP . . . N 3 167.444 151.798 126.133 1 0 ? H4' UTP 602 C 1 
HETATM 31 H H1' UTP . . . N 3 164.251 150.628 125.73 1 0 ? H1' UTP 602 C 1 
HETATM 32 H H2' UTP . . . N 3 164.223 152.952 124.583 1 0 ? H2' UTP 602 C 1 
HETATM 33 H H3' UTP . . . N 3 165.618 154.022 126.117 1 0 ? H3' UTP 602 C 1 
HETATM 34 H H6 UTP . . . N 3 164.566 153.288 128.044 1 0 ? H6 UTP 602 C 1 
HETATM 35 H H3 UTP . . . N 3 160.334 151.927 127.33 1 0 ? H3 UTP 602 C 1 
HETATM 36 H H5 UTP . . . N 3 162.917 154.175 129.335 1 0 ? H5 UTP 602 C 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    358 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#