data_7RN1 # _model_server_result.job_id xuIrBK5DoNd_x09TsFQVxg _model_server_result.datetime_utc '2025-01-28 02:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7RN1 # _exptl.entry_id 7RN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.989 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-([1,1'-biphenyl]-4-yl)-2-chloro-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]acetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.82 _cell.angle_gamma 90 _cell.entry_id 7RN1 _cell.length_a 114.27 _cell.length_b 53.26 _cell.length_c 45.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C34 _struct_conn.ptnr2_label_comp_id 5ZF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5ZF _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.754 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H26 Cl N3 O2' _chem_comp.formula_weight 483.989 _chem_comp.id 5ZF _chem_comp.mon_nstd_flag . _chem_comp.name "N-([1,1'-biphenyl]-4-yl)-2-chloro-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 N19 5ZF doub 1 n y C20 C21 5ZF sing 2 n y N19 C18 5ZF sing 3 n y C21 C22 5ZF doub 4 n y C18 C17 5ZF doub 5 n y C22 C17 5ZF sing 6 n y C17 C16 5ZF sing 7 n n O01 C02 5ZF doub 8 n n CL35 C34 5ZF sing 9 n n C34 C02 5ZF sing 10 n n C02 N03 5ZF sing 11 n n O33 C23 5ZF doub 12 n n N03 C16 5ZF sing 13 n n N03 C04 5ZF sing 14 n n C16 C23 5ZF sing 15 n n C15 C04 5ZF doub 16 n y C15 C14 5ZF sing 17 n y C23 N24 5ZF sing 18 n n C04 C05 5ZF sing 19 n y C14 C07 5ZF doub 20 n y N24 C25 5ZF sing 21 n n C25 C26 5ZF sing 22 n n C25 C27 5ZF sing 23 n n C28 C27 5ZF doub 24 n y C28 C29 5ZF sing 25 n y C05 C06 5ZF doub 26 n y C27 C32 5ZF sing 27 n y C07 C06 5ZF sing 28 n y C07 C08 5ZF sing 29 n n C29 C30 5ZF doub 30 n y C13 C08 5ZF doub 31 n y C13 C12 5ZF sing 32 n y C08 C09 5ZF sing 33 n y C32 C31 5ZF doub 34 n y C12 C11 5ZF doub 35 n y C30 C31 5ZF sing 36 n y C09 C10 5ZF doub 37 n y C11 C10 5ZF sing 38 n y C10 H1 5ZF sing 39 n n C13 H2 5ZF sing 40 n n C15 H3 5ZF sing 41 n n C20 H4 5ZF sing 42 n n C21 H5 5ZF sing 43 n n C22 H6 5ZF sing 44 n n C26 H7 5ZF sing 45 n n C26 H8 5ZF sing 46 n n C26 H9 5ZF sing 47 n n C28 H10 5ZF sing 48 n n C05 H11 5ZF sing 49 n n C06 H12 5ZF sing 50 n n C09 H13 5ZF sing 51 n n C11 H14 5ZF sing 52 n n C12 H15 5ZF sing 53 n n C14 H16 5ZF sing 54 n n C16 H17 5ZF sing 55 n n C18 H18 5ZF sing 56 n n N24 H19 5ZF sing 57 n n C25 H20 5ZF sing 58 n n C29 H21 5ZF sing 59 n n C30 H22 5ZF sing 60 n n C31 H23 5ZF sing 61 n n C32 H24 5ZF sing 62 n n C34 H25 5ZF sing 63 n n C34 H26 5ZF sing 64 n n # _atom_sites.entry_id 7RN1 _atom_sites.fract_transf_matrix[1][1] 0.008751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001991 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL GOL . C 3 SO4 A 1 502 701 SO4 SO4 . D 4 5ZF A 1 503 901 5ZF LIG . E 2 GOL A 1 504 1001 GOL GOL . F 5 HOH A 1 601 5 HOH HOH . F 5 HOH A 2 602 2 HOH HOH . F 5 HOH A 3 603 6 HOH HOH . F 5 HOH A 4 604 3 HOH HOH . F 5 HOH A 5 605 1 HOH HOH . F 5 HOH A 6 606 4 HOH HOH . F 5 HOH A 7 607 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 5ZF . . . D 4 12.757 -3.195 26.759 1 43.77 ? C10 5ZF 503 A 1 HETATM 2 C C13 5ZF . . . D 4 13.093 -2.193 24.215 1 42.7 ? C13 5ZF 503 A 1 HETATM 3 C C15 5ZF . . . D 4 9.548 -1.35 21.614 1 36.91 ? C15 5ZF 503 A 1 HETATM 4 C C17 5ZF . . . D 4 5.845 0.679 20.134 1 32.98 ? C17 5ZF 503 A 1 HETATM 5 C C20 5ZF . . . D 4 4.949 1.603 17.658 1 37.74 ? C20 5ZF 503 A 1 HETATM 6 C C21 5ZF . . . D 4 4.242 1.942 18.799 1 34.65 ? C21 5ZF 503 A 1 HETATM 7 C C22 5ZF . . . D 4 4.74 1.49 20.035 1 33.16 ? C22 5ZF 503 A 1 HETATM 8 C C26 5ZF . . . D 4 8.141 4.481 23.453 1 36.41 ? C26 5ZF 503 A 1 HETATM 9 C C28 5ZF . . . D 4 11.202 2.979 23.374 1 36.01 ? C28 5ZF 503 A 1 HETATM 10 O O01 5ZF . . . D 4 5.434 -2.045 20.159 1 35.01 ? O01 5ZF 503 A 1 HETATM 11 C C02 5ZF . . . D 4 6.534 -2.17 20.758 1 36.8 ? C02 5ZF 503 A 1 HETATM 12 N N03 5ZF . . . D 4 7.077 -1.087 21.435 1 33.46 ? N03 5ZF 503 A 1 HETATM 13 C C04 5ZF . . . D 4 8.253 -1.328 22.128 1 37.26 ? C04 5ZF 503 A 1 HETATM 14 C C05 5ZF . . . D 4 8.175 -1.744 23.471 1 37.21 ? C05 5ZF 503 A 1 HETATM 15 C C06 5ZF . . . D 4 9.259 -2.051 24.264 1 40.11 ? C06 5ZF 503 A 1 HETATM 16 C C07 5ZF . . . D 4 10.579 -2.032 23.783 1 38.7 ? C07 5ZF 503 A 1 HETATM 17 C C08 5ZF . . . D 4 11.753 -2.378 24.658 1 39.26 ? C08 5ZF 503 A 1 HETATM 18 C C09 5ZF . . . D 4 11.634 -2.89 25.947 1 40.45 ? C09 5ZF 503 A 1 HETATM 19 C C11 5ZF . . . D 4 14.067 -3.003 26.266 1 46.16 ? C11 5ZF 503 A 1 HETATM 20 C C12 5ZF . . . D 4 14.204 -2.489 24.982 1 43.34 ? C12 5ZF 503 A 1 HETATM 21 C C14 5ZF . . . D 4 10.663 -1.673 22.41 1 37.08 ? C14 5ZF 503 A 1 HETATM 22 C C16 5ZF . . . D 4 6.443 0.185 21.508 1 36.11 ? C16 5ZF 503 A 1 HETATM 23 C C18 5ZF . . . D 4 6.485 0.404 18.923 1 34.32 ? C18 5ZF 503 A 1 HETATM 24 N N19 5ZF . . . D 4 6.076 0.813 17.724 1 36.33 ? N19 5ZF 503 A 1 HETATM 25 C C23 5ZF . . . D 4 7.638 1.215 21.722 1 38.17 ? C23 5ZF 503 A 1 HETATM 26 N N24 5ZF . . . D 4 7.621 2.254 22.671 1 35.59 ? N24 5ZF 503 A 1 HETATM 27 C C25 5ZF . . . D 4 8.748 3.222 22.804 1 33.11 ? C25 5ZF 503 A 1 HETATM 28 C C27 5ZF . . . D 4 9.883 2.64 23.657 1 33.29 ? C27 5ZF 503 A 1 HETATM 29 C C29 5ZF . . . D 4 12.315 2.484 24.099 1 31.96 ? C29 5ZF 503 A 1 HETATM 30 C C30 5ZF . . . D 4 12.106 1.604 25.132 1 33.61 ? C30 5ZF 503 A 1 HETATM 31 C C31 5ZF . . . D 4 10.791 1.228 25.422 1 35.25 ? C31 5ZF 503 A 1 HETATM 32 C C32 5ZF . . . D 4 9.703 1.744 24.69 1 32.7 ? C32 5ZF 503 A 1 HETATM 33 O O33 5ZF . . . D 4 8.62 1.127 20.927 1 37.5 ? O33 5ZF 503 A 1 HETATM 34 C C34 5ZF . . . D 4 7.212 -3.504 20.537 1 37.86 ? C34 5ZF 503 A 1 HETATM 35 CL CL35 5ZF . . . D 4 5.868 -4.622 20.313 1 51.94 ? CL35 5ZF 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #