data_7RNP
#
_model_server_result.job_id            CvVFToiRG4V8EicWR5ukRg 
_model_server_result.datetime_utc      '2024-11-28 01:14:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rnp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":401}' 
#
_entry.id    7RNP 
#
_exptl.entry_id    7RNP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RNP 
_cell.length_a            56.162 
_cell.length_b            81.198 
_cell.length_c            321.014 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RNP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J,K,N 1 1 
B,C,G,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 81 A HIS 81 1_555 A N LLP 82 A LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C LLP 82 A LLP 82 1_555 A N THR 83 A THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C HIS 81 B HIS 81 1_555 B N LLP 82 B LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 B C LLP 82 B LLP 82 1_555 B N THR 83 B THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 C C HIS 81 C HIS 81 1_555 C N LLP 82 C LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 C C LLP 82 C LLP 82 1_555 C N THR 83 C THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 D C HIS 81 D HIS 81 1_555 D N LLP 82 D LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 D C LLP 82 D LLP 82 1_555 D N THR 83 D THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A O SER 263 A SER 263 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc2 A OG SER 265 A SER 265 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc3 A O TYR 301 A TYR 301 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc4 A O GLY 303 A GLY 303 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc5 B O GLY 227 B GLY 227 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc6 B O SER 263 B SER 263 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc7 B OG SER 265 B SER 265 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? 
metalc ? metalc8 B O TYR 301 B TYR 301 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc9 B O GLY 303 B GLY 303 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc10 C O GLY 227 C GLY 227 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc11 C O SER 263 C SER 263 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc12 C OG SER 265 C SER 265 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? 
metalc ? metalc13 C O TYR 301 C TYR 301 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc14 C O GLY 303 C GLY 303 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc15 D O GLY 227 D GLY 227 1_555 J NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? 
metalc ? metalc16 D O SER 263 D SER 263 1_555 J NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc17 D O TYR 301 D TYR 301 1_555 J NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc18 D O GLY 303 D GLY 303 1_555 J NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7RNP 
_atom_sites.fract_transf_matrix[1][1]    0.017806 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003115 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6G5 A 1 401 401 6G5 LIG . 
F 3 NA A 1 402 4 NA NA . 
G 2 6G5 B 1 401 401 6G5 LIG . 
H 3 NA B 1 402 1 NA NA . 
I 3 NA C 1 401 3 NA NA . 
J 3 NA D 1 401 2 NA NA . 
K 4 HOH A 1 501 27 HOH HOH . 
K 4 HOH A 2 502 13 HOH HOH . 
K 4 HOH A 3 503 31 HOH HOH . 
K 4 HOH A 4 504 2 HOH HOH . 
K 4 HOH A 5 505 32 HOH HOH . 
K 4 HOH A 6 506 15 HOH HOH . 
K 4 HOH A 7 507 9 HOH HOH . 
K 4 HOH A 8 508 26 HOH HOH . 
K 4 HOH A 9 509 5 HOH HOH . 
K 4 HOH A 10 510 6 HOH HOH . 
K 4 HOH A 11 511 21 HOH HOH . 
K 4 HOH A 12 512 30 HOH HOH . 
K 4 HOH A 13 513 24 HOH HOH . 
L 4 HOH B 1 501 11 HOH HOH . 
L 4 HOH B 2 502 10 HOH HOH . 
L 4 HOH B 3 503 23 HOH HOH . 
M 4 HOH C 1 501 14 HOH HOH . 
M 4 HOH C 2 502 12 HOH HOH . 
N 4 HOH D 1 501 29 HOH HOH . 
N 4 HOH D 2 502 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               16.795 
_atom_site.Cartn_y               -6.341 
_atom_site.Cartn_z               -168.748 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        71.21 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#