data_7RNY
#
_model_server_result.job_id            RfBwi6DrdvAi173s6nbclg 
_model_server_result.datetime_utc      '2024-10-11 04:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rny 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7RNY 
#
_exptl.entry_id    7RNY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.22 
_cell.angle_gamma         90 
_cell.entry_id            7RNY 
_cell.length_a            42.427 
_cell.length_b            41.271 
_cell.length_c            72.016 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RNY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N16 65M . A 65M 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 169 n n 
C1 C2 GOL sing 170 n n 
C1 H11 GOL sing 171 n n 
C1 H12 GOL sing 172 n n 
O1 HO1 GOL sing 173 n n 
C2 O2 GOL sing 174 n n 
C2 C3 GOL sing 175 n n 
C2 H2 GOL sing 176 n n 
O2 HO2 GOL sing 177 n n 
C3 O3 GOL sing 178 n n 
C3 H31 GOL sing 179 n n 
C3 H32 GOL sing 180 n n 
O3 HO3 GOL sing 181 n n 
#
_atom_sites.entry_id                     7RNY 
_atom_sites.fract_transf_matrix[1][1]    0.02357 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005974 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014325 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 3 65M A 1 302 304 65M LIG . 
D 4 GOL A 1 303 305 GOL GOL . 
E 5 HOH A 1 401 227 HOH HOH . 
E 5 HOH A 2 402 195 HOH HOH . 
E 5 HOH A 3 403 132 HOH HOH . 
E 5 HOH A 4 404 231 HOH HOH . 
E 5 HOH A 5 405 120 HOH HOH . 
E 5 HOH A 6 406 28 HOH HOH . 
E 5 HOH A 7 407 187 HOH HOH . 
E 5 HOH A 8 408 143 HOH HOH . 
E 5 HOH A 9 409 153 HOH HOH . 
E 5 HOH A 10 410 197 HOH HOH . 
E 5 HOH A 11 411 213 HOH HOH . 
E 5 HOH A 12 412 93 HOH HOH . 
E 5 HOH A 13 413 91 HOH HOH . 
E 5 HOH A 14 414 71 HOH HOH . 
E 5 HOH A 15 415 41 HOH HOH . 
E 5 HOH A 16 416 172 HOH HOH . 
E 5 HOH A 17 417 156 HOH HOH . 
E 5 HOH A 18 418 224 HOH HOH . 
E 5 HOH A 19 419 127 HOH HOH . 
E 5 HOH A 20 420 55 HOH HOH . 
E 5 HOH A 21 421 45 HOH HOH . 
E 5 HOH A 22 422 186 HOH HOH . 
E 5 HOH A 23 423 199 HOH HOH . 
E 5 HOH A 24 424 137 HOH HOH . 
E 5 HOH A 25 425 126 HOH HOH . 
E 5 HOH A 26 426 1 HOH HOH . 
E 5 HOH A 27 427 183 HOH HOH . 
E 5 HOH A 28 428 47 HOH HOH . 
E 5 HOH A 29 429 162 HOH HOH . 
E 5 HOH A 30 430 113 HOH HOH . 
E 5 HOH A 31 431 135 HOH HOH . 
E 5 HOH A 32 432 27 HOH HOH . 
E 5 HOH A 33 433 13 HOH HOH . 
E 5 HOH A 34 434 123 HOH HOH . 
E 5 HOH A 35 435 54 HOH HOH . 
E 5 HOH A 36 436 118 HOH HOH . 
E 5 HOH A 37 437 40 HOH HOH . 
E 5 HOH A 38 438 138 HOH HOH . 
E 5 HOH A 39 439 68 HOH HOH . 
E 5 HOH A 40 440 22 HOH HOH . 
E 5 HOH A 41 441 64 HOH HOH . 
E 5 HOH A 42 442 98 HOH HOH . 
E 5 HOH A 43 443 160 HOH HOH . 
E 5 HOH A 44 444 130 HOH HOH . 
E 5 HOH A 45 445 6 HOH HOH . 
E 5 HOH A 46 446 105 HOH HOH . 
E 5 HOH A 47 447 150 HOH HOH . 
E 5 HOH A 48 448 179 HOH HOH . 
E 5 HOH A 49 449 188 HOH HOH . 
E 5 HOH A 50 450 57 HOH HOH . 
E 5 HOH A 51 451 23 HOH HOH . 
E 5 HOH A 52 452 50 HOH HOH . 
E 5 HOH A 53 453 17 HOH HOH . 
E 5 HOH A 54 454 26 HOH HOH . 
E 5 HOH A 55 455 106 HOH HOH . 
E 5 HOH A 56 456 38 HOH HOH . 
E 5 HOH A 57 457 63 HOH HOH . 
E 5 HOH A 58 458 10 HOH HOH . 
E 5 HOH A 59 459 42 HOH HOH . 
E 5 HOH A 60 460 43 HOH HOH . 
E 5 HOH A 61 461 62 HOH HOH . 
E 5 HOH A 62 462 229 HOH HOH . 
E 5 HOH A 63 463 230 HOH HOH . 
E 5 HOH A 64 464 151 HOH HOH . 
E 5 HOH A 65 465 140 HOH HOH . 
E 5 HOH A 66 466 35 HOH HOH . 
E 5 HOH A 67 467 34 HOH HOH . 
E 5 HOH A 68 468 19 HOH HOH . 
E 5 HOH A 69 469 154 HOH HOH . 
E 5 HOH A 70 470 152 HOH HOH . 
E 5 HOH A 71 471 69 HOH HOH . 
E 5 HOH A 72 472 3 HOH HOH . 
E 5 HOH A 73 473 58 HOH HOH . 
E 5 HOH A 74 474 8 HOH HOH . 
E 5 HOH A 75 475 124 HOH HOH . 
E 5 HOH A 76 476 76 HOH HOH . 
E 5 HOH A 77 477 16 HOH HOH . 
E 5 HOH A 78 478 131 HOH HOH . 
E 5 HOH A 79 479 97 HOH HOH . 
E 5 HOH A 80 480 39 HOH HOH . 
E 5 HOH A 81 481 144 HOH HOH . 
E 5 HOH A 82 482 158 HOH HOH . 
E 5 HOH A 83 483 117 HOH HOH . 
E 5 HOH A 84 484 95 HOH HOH . 
E 5 HOH A 85 485 77 HOH HOH . 
E 5 HOH A 86 486 83 HOH HOH . 
E 5 HOH A 87 487 80 HOH HOH . 
E 5 HOH A 88 488 60 HOH HOH . 
E 5 HOH A 89 489 89 HOH HOH . 
E 5 HOH A 90 490 56 HOH HOH . 
E 5 HOH A 91 491 37 HOH HOH . 
E 5 HOH A 92 492 36 HOH HOH . 
E 5 HOH A 93 493 4 HOH HOH . 
E 5 HOH A 94 494 109 HOH HOH . 
E 5 HOH A 95 495 129 HOH HOH . 
E 5 HOH A 96 496 92 HOH HOH . 
E 5 HOH A 97 497 101 HOH HOH . 
E 5 HOH A 98 498 61 HOH HOH . 
E 5 HOH A 99 499 5 HOH HOH . 
E 5 HOH A 100 500 221 HOH HOH . 
E 5 HOH A 101 501 79 HOH HOH . 
E 5 HOH A 102 502 99 HOH HOH . 
E 5 HOH A 103 503 100 HOH HOH . 
E 5 HOH A 104 504 203 HOH HOH . 
E 5 HOH A 105 505 15 HOH HOH . 
E 5 HOH A 106 506 146 HOH HOH . 
E 5 HOH A 107 507 75 HOH HOH . 
E 5 HOH A 108 508 212 HOH HOH . 
E 5 HOH A 109 509 102 HOH HOH . 
E 5 HOH A 110 510 198 HOH HOH . 
E 5 HOH A 111 511 85 HOH HOH . 
E 5 HOH A 112 512 215 HOH HOH . 
E 5 HOH A 113 513 48 HOH HOH . 
E 5 HOH A 114 514 33 HOH HOH . 
E 5 HOH A 115 515 141 HOH HOH . 
E 5 HOH A 116 516 178 HOH HOH . 
E 5 HOH A 117 517 168 HOH HOH . 
E 5 HOH A 118 518 74 HOH HOH . 
E 5 HOH A 119 519 81 HOH HOH . 
E 5 HOH A 120 520 114 HOH HOH . 
E 5 HOH A 121 521 182 HOH HOH . 
E 5 HOH A 122 522 194 HOH HOH . 
E 5 HOH A 123 523 192 HOH HOH . 
E 5 HOH A 124 524 216 HOH HOH . 
E 5 HOH A 125 525 128 HOH HOH . 
E 5 HOH A 126 526 103 HOH HOH . 
E 5 HOH A 127 527 155 HOH HOH . 
E 5 HOH A 128 528 142 HOH HOH . 
E 5 HOH A 129 529 7 HOH HOH . 
E 5 HOH A 130 530 67 HOH HOH . 
E 5 HOH A 131 531 181 HOH HOH . 
E 5 HOH A 132 532 90 HOH HOH . 
E 5 HOH A 133 533 72 HOH HOH . 
E 5 HOH A 134 534 161 HOH HOH . 
E 5 HOH A 135 535 87 HOH HOH . 
E 5 HOH A 136 536 214 HOH HOH . 
E 5 HOH A 137 537 46 HOH HOH . 
E 5 HOH A 138 538 169 HOH HOH . 
E 5 HOH A 139 539 86 HOH HOH . 
E 5 HOH A 140 540 134 HOH HOH . 
E 5 HOH A 141 541 44 HOH HOH . 
E 5 HOH A 142 542 217 HOH HOH . 
E 5 HOH A 143 543 191 HOH HOH . 
E 5 HOH A 144 544 119 HOH HOH . 
E 5 HOH A 145 545 193 HOH HOH . 
E 5 HOH A 146 546 196 HOH HOH . 
E 5 HOH A 147 547 14 HOH HOH . 
E 5 HOH A 148 548 136 HOH HOH . 
E 5 HOH A 149 549 25 HOH HOH . 
E 5 HOH A 150 550 59 HOH HOH . 
E 5 HOH A 151 551 148 HOH HOH . 
E 5 HOH A 152 552 209 HOH HOH . 
E 5 HOH A 153 553 9 HOH HOH . 
E 5 HOH A 154 554 107 HOH HOH . 
E 5 HOH A 155 555 21 HOH HOH . 
E 5 HOH A 156 556 145 HOH HOH . 
E 5 HOH A 157 557 78 HOH HOH . 
E 5 HOH A 158 558 208 HOH HOH . 
E 5 HOH A 159 559 185 HOH HOH . 
E 5 HOH A 160 560 232 HOH HOH . 
E 5 HOH A 161 561 53 HOH HOH . 
E 5 HOH A 162 562 164 HOH HOH . 
E 5 HOH A 163 563 2 HOH HOH . 
E 5 HOH A 164 564 49 HOH HOH . 
E 5 HOH A 165 565 190 HOH HOH . 
E 5 HOH A 166 566 66 HOH HOH . 
E 5 HOH A 167 567 110 HOH HOH . 
E 5 HOH A 168 568 218 HOH HOH . 
E 5 HOH A 169 569 139 HOH HOH . 
E 5 HOH A 170 570 170 HOH HOH . 
E 5 HOH A 171 571 112 HOH HOH . 
E 5 HOH A 172 572 111 HOH HOH . 
E 5 HOH A 173 573 94 HOH HOH . 
E 5 HOH A 174 574 202 HOH HOH . 
E 5 HOH A 175 575 116 HOH HOH . 
E 5 HOH A 176 576 84 HOH HOH . 
E 5 HOH A 177 577 104 HOH HOH . 
E 5 HOH A 178 578 73 HOH HOH . 
E 5 HOH A 179 579 171 HOH HOH . 
E 5 HOH A 180 580 211 HOH HOH . 
E 5 HOH A 181 581 20 HOH HOH . 
E 5 HOH A 182 582 125 HOH HOH . 
E 5 HOH A 183 583 115 HOH HOH . 
E 5 HOH A 184 584 70 HOH HOH . 
E 5 HOH A 185 585 52 HOH HOH . 
E 5 HOH A 186 586 32 HOH HOH . 
E 5 HOH A 187 587 96 HOH HOH . 
E 5 HOH A 188 588 220 HOH HOH . 
E 5 HOH A 189 589 180 HOH HOH . 
E 5 HOH A 190 590 204 HOH HOH . 
E 5 HOH A 191 591 201 HOH HOH . 
E 5 HOH A 192 592 88 HOH HOH . 
E 5 HOH A 193 593 167 HOH HOH . 
E 5 HOH A 194 594 147 HOH HOH . 
E 5 HOH A 195 595 228 HOH HOH . 
E 5 HOH A 196 596 234 HOH HOH . 
E 5 HOH A 197 597 174 HOH HOH . 
E 5 HOH A 198 598 176 HOH HOH . 
E 5 HOH A 199 599 233 HOH HOH . 
E 5 HOH A 200 600 31 HOH HOH . 
E 5 HOH A 201 601 149 HOH HOH . 
E 5 HOH A 202 602 157 HOH HOH . 
E 5 HOH A 203 603 165 HOH HOH . 
E 5 HOH A 204 604 184 HOH HOH . 
E 5 HOH A 205 605 163 HOH HOH . 
E 5 HOH A 206 606 133 HOH HOH . 
E 5 HOH A 207 607 108 HOH HOH . 
E 5 HOH A 208 608 18 HOH HOH . 
E 5 HOH A 209 609 122 HOH HOH . 
E 5 HOH A 210 610 121 HOH HOH . 
E 5 HOH A 211 611 189 HOH HOH . 
E 5 HOH A 212 612 166 HOH HOH . 
E 5 HOH A 213 613 159 HOH HOH . 
E 5 HOH A 214 614 219 HOH HOH . 
E 5 HOH A 215 615 200 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -4.349 -0.225 11.698 1 11.16 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 -3.079 -0.394 11.135 1 12.93 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 -5.027 0.972 11.022 1 11.06 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 -5.109 0.776 9.643 1 10.42 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 -4.31 2.29 11.29 1 12.81 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 -5.19 3.337 10.897 1 13.83 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#