data_7ROF # _model_server_result.job_id vXeZrRS2akafOaEpVDzhkw _model_server_result.datetime_utc '2024-11-07 10:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 7ROF # _exptl.entry_id 7ROF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ROF _cell.length_a 57.402 _cell.length_b 82.658 _cell.length_c 322.255 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ROF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 81 A HIS 81 1_555 A N LLP 82 A LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C LLP 82 A LLP 82 1_555 A N THR 83 A THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C HIS 81 B HIS 81 1_555 B N LLP 82 B LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 B C LLP 82 B LLP 82 1_555 B N THR 83 B THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 C C HIS 81 C HIS 81 1_555 C N LLP 82 C LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 C C LLP 82 C LLP 82 1_555 C N THR 83 C THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 D C HIS 81 D HIS 81 1_555 D N LLP 82 D LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 D C LLP 82 D LLP 82 1_555 D N THR 83 D THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A O GLY 227 A GLY 227 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc2 A O SER 263 A SER 263 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc3 A O TYR 301 A TYR 301 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc4 A O GLY 303 A GLY 303 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc5 B O SER 263 B SER 263 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc6 B OG SER 265 B SER 265 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc7 B O TYR 301 B TYR 301 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc8 B O GLY 303 B GLY 303 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc9 C O GLY 227 C GLY 227 1_555 H NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc10 C O SER 263 C SER 263 1_555 H NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc11 C OG SER 265 C SER 265 1_555 H NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc12 C O TYR 301 C TYR 301 1_555 H NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc13 C O GLY 303 C GLY 303 1_555 H NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc14 D O GLY 227 D GLY 227 1_555 J NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc15 D O SER 263 D SER 263 1_555 J NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc16 D OG SER 265 D SER 265 1_555 J NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc17 D O TYR 301 D TYR 301 1_555 J NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc18 D O GLY 303 D GLY 303 1_555 J NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ROF _atom_sites.fract_transf_matrix[1][1] 0.017421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TRP A 1 401 401 TRP TRP . F 3 NA A 1 402 1 NA NA . G 3 NA B 1 401 3 NA NA . H 3 NA C 1 401 4 NA NA . I 2 TRP D 1 401 401 TRP TRP . J 3 NA D 1 402 2 NA NA . K 4 HOH A 1 501 10 HOH HOH . K 4 HOH A 2 502 4 HOH HOH . K 4 HOH A 3 503 2 HOH HOH . K 4 HOH A 4 504 7 HOH HOH . L 4 HOH B 1 501 1 HOH HOH . M 4 HOH C 1 501 3 HOH HOH . N 4 HOH D 1 501 9 HOH HOH . N 4 HOH D 2 502 8 HOH HOH . N 4 HOH D 3 503 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.966 _atom_site.Cartn_y -47.435 _atom_site.Cartn_z 7.497 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 85.2 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 158 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 49 _model_server_stats.element_count 1 #