data_7ROT # _model_server_result.job_id mj8pzW8yaIunOGf2p4crCw _model_server_result.datetime_utc '2025-01-11 00:56:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7ROT # _exptl.entry_id 7ROT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.5 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(2R,3S,4R,5R)-5-[4-amino-3-(difluoromethoxy)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl}methyl [(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]sulfamate (non-preferred name)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.455 _cell.angle_gamma 90 _cell.entry_id 7ROT _cell.length_a 138.188 _cell.length_b 47.679 _cell.length_c 140.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ROT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 131 A MET 131 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 A OE1 GLU 132 A GLU 132 1_555 E MG MG . A MG 403 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc3 A O VAL 134 A VAL 134 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 A O ARG 304 A ARG 304 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc5 D MG MG . A MG 402 1_555 H O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc6 D MG MG . A MG 402 1_555 H O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 D MG MG . A MG 402 1_555 H O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc8 D MG MG . A MG 402 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc9 E MG MG . A MG 403 1_555 H O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc10 E MG MG . A MG 403 1_555 H O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc11 E MG MG . A MG 403 1_555 H O HOH . A HOH 548 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'C20 H23 F2 N7 O9 S' _chem_comp.formula_weight 575.5 _chem_comp.id 66I _chem_comp.mon_nstd_flag . _chem_comp.name '{(2R,3S,4R,5R)-5-[4-amino-3-(difluoromethoxy)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl}methyl [(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]sulfamate (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C29 66I sing 1 n n C29 C31 66I doub 2 n y C29 C28 66I sing 3 n y C31 C32 66I sing 4 n y C28 C27 66I doub 5 n y C32 C26 66I doub 6 n y C27 C26 66I sing 7 n y C26 C25 66I sing 8 n n C25 C24 66I sing 9 n n O19 C18 66I sing 10 n n O19 S20 66I sing 11 n n O21 S20 66I doub 12 n n N22 S20 66I sing 13 n n N22 C23 66I sing 14 n n C24 C23 66I sing 15 n n C24 N33 66I sing 16 n n C17 C18 66I sing 17 n n C17 O16 66I sing 18 n n C17 C36 66I sing 19 n n O16 C15 66I sing 20 n n S20 O35 66I doub 21 n n C23 O34 66I doub 22 n n O37 C36 66I sing 23 n n C36 C38 66I sing 24 n n C15 C38 66I sing 25 n n C15 N14 66I sing 26 n n F11 C10 66I sing 27 n n C38 O39 66I sing 28 n n N14 N13 66I sing 29 n y N14 C06 66I sing 30 n y N13 C08 66I doub 31 n y C06 N05 66I doub 32 n y C06 C07 66I sing 33 n y N05 C04 66I sing 34 n y C10 F12 66I sing 35 n n C10 O09 66I sing 36 n n C08 C07 66I sing 37 n y C08 O09 66I sing 38 n n C07 C02 66I doub 39 n y C04 N03 66I doub 40 n y C02 N03 66I sing 41 n y C02 N01 66I sing 42 n n C24 H1 66I sing 43 n n C27 H2 66I sing 44 n n C28 H3 66I sing 45 n n C25 H4 66I sing 46 n n C25 H5 66I sing 47 n n C31 H6 66I sing 48 n n C32 H7 66I sing 49 n n C10 H8 66I sing 50 n n C15 H9 66I sing 51 n n C17 H10 66I sing 52 n n C18 H11 66I sing 53 n n C18 H12 66I sing 54 n n C04 H13 66I sing 55 n n C36 H14 66I sing 56 n n C38 H15 66I sing 57 n n N01 H16 66I sing 58 n n N01 H17 66I sing 59 n n N22 H18 66I sing 60 n n N33 H19 66I sing 61 n n N33 H20 66I sing 62 n n O30 H22 66I sing 63 n n O37 H23 66I sing 64 n n O39 H24 66I sing 65 n n # _atom_sites.entry_id 7ROT _atom_sites.fract_transf_matrix[1][1] 0.007237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000564 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 66I A 1 401 400 66I 901 . D 3 MG A 1 402 1 MG MG . E 3 MG A 1 403 2 MG MG . F 4 CL A 1 404 1 CL CL . G 2 66I B 1 400 400 66I 901 . H 5 HOH A 1 501 20 HOH HOH . H 5 HOH A 2 502 40 HOH HOH . H 5 HOH A 3 503 73 HOH HOH . H 5 HOH A 4 504 55 HOH HOH . H 5 HOH A 5 505 69 HOH HOH . H 5 HOH A 6 506 65 HOH HOH . H 5 HOH A 7 507 45 HOH HOH . H 5 HOH A 8 508 2 HOH HOH . H 5 HOH A 9 509 19 HOH HOH . H 5 HOH A 10 510 4 HOH HOH . H 5 HOH A 11 511 5 HOH HOH . H 5 HOH A 12 512 79 HOH HOH . H 5 HOH A 13 513 25 HOH HOH . H 5 HOH A 14 514 17 HOH HOH . H 5 HOH A 15 515 9 HOH HOH . H 5 HOH A 16 516 13 HOH HOH . H 5 HOH A 17 517 47 HOH HOH . H 5 HOH A 18 518 3 HOH HOH . H 5 HOH A 19 519 27 HOH HOH . H 5 HOH A 20 520 74 HOH HOH . H 5 HOH A 21 521 21 HOH HOH . H 5 HOH A 22 522 64 HOH HOH . H 5 HOH A 23 523 7 HOH HOH . H 5 HOH A 24 524 15 HOH HOH . H 5 HOH A 25 525 44 HOH HOH . H 5 HOH A 26 526 76 HOH HOH . H 5 HOH A 27 527 6 HOH HOH . H 5 HOH A 28 528 34 HOH HOH . H 5 HOH A 29 529 22 HOH HOH . H 5 HOH A 30 530 14 HOH HOH . H 5 HOH A 31 531 37 HOH HOH . H 5 HOH A 32 532 46 HOH HOH . H 5 HOH A 33 533 51 HOH HOH . H 5 HOH A 34 534 67 HOH HOH . H 5 HOH A 35 535 16 HOH HOH . H 5 HOH A 36 536 30 HOH HOH . H 5 HOH A 37 537 78 HOH HOH . H 5 HOH A 38 538 58 HOH HOH . H 5 HOH A 39 539 42 HOH HOH . H 5 HOH A 40 540 61 HOH HOH . H 5 HOH A 41 541 32 HOH HOH . H 5 HOH A 42 542 72 HOH HOH . H 5 HOH A 43 543 57 HOH HOH . H 5 HOH A 44 544 50 HOH HOH . H 5 HOH A 45 545 29 HOH HOH . H 5 HOH A 46 546 56 HOH HOH . H 5 HOH A 47 547 18 HOH HOH . H 5 HOH A 48 548 59 HOH HOH . H 5 HOH A 49 549 66 HOH HOH . H 5 HOH A 50 550 70 HOH HOH . H 5 HOH A 51 551 53 HOH HOH . H 5 HOH A 52 552 82 HOH HOH . H 5 HOH A 53 553 71 HOH HOH . H 5 HOH A 54 554 52 HOH HOH . H 5 HOH A 55 555 80 HOH HOH . H 5 HOH A 56 556 81 HOH HOH . I 5 HOH B 1 501 62 HOH HOH . I 5 HOH B 2 502 31 HOH HOH . I 5 HOH B 3 503 77 HOH HOH . I 5 HOH B 4 504 33 HOH HOH . I 5 HOH B 5 505 36 HOH HOH . I 5 HOH B 6 506 12 HOH HOH . I 5 HOH B 7 507 41 HOH HOH . I 5 HOH B 8 508 10 HOH HOH . I 5 HOH B 9 509 49 HOH HOH . I 5 HOH B 10 510 75 HOH HOH . I 5 HOH B 11 511 11 HOH HOH . I 5 HOH B 12 512 48 HOH HOH . I 5 HOH B 13 513 26 HOH HOH . I 5 HOH B 14 514 38 HOH HOH . I 5 HOH B 15 515 23 HOH HOH . I 5 HOH B 16 516 24 HOH HOH . I 5 HOH B 17 517 1 HOH HOH . I 5 HOH B 18 518 39 HOH HOH . I 5 HOH B 19 519 43 HOH HOH . I 5 HOH B 20 520 8 HOH HOH . I 5 HOH B 21 521 35 HOH HOH . I 5 HOH B 22 522 28 HOH HOH . I 5 HOH B 23 523 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 66I . . . C 2 6.558 -2.383 51.85 1 46.81 ? C24 66I 401 A 1 HETATM 2 C C26 66I . . . C 2 7.247 -0.509 50.158 1 45.06 ? C26 66I 401 A 1 HETATM 3 C C27 66I . . . C 2 8.629 -0.821 49.982 1 38.65 ? C27 66I 401 A 1 HETATM 4 C C28 66I . . . C 2 9.308 -0.533 48.766 1 40.66 ? C28 66I 401 A 1 HETATM 5 C C29 66I . . . C 2 8.612 0.075 47.683 1 40.48 ? C29 66I 401 A 1 HETATM 6 C C25 66I . . . C 2 6.519 -0.841 51.489 1 43.24 ? C25 66I 401 A 1 HETATM 7 C C31 66I . . . C 2 7.23 0.389 47.845 1 42.6 ? C31 66I 401 A 1 HETATM 8 C C32 66I . . . C 2 6.565 0.095 49.07 1 41.31 ? C32 66I 401 A 1 HETATM 9 C C10 66I . . . C 2 6.814 -3.923 60.688 1 60.55 ? C10 66I 401 A 1 HETATM 10 C C23 66I . . . C 2 6.298 -2.583 53.367 1 51.02 ? C23 66I 401 A 1 HETATM 11 C C15 66I . . . C 2 11.113 -3.72 57.486 1 46.36 ? C15 66I 401 A 1 HETATM 12 C C17 66I . . . C 2 10.582 -1.899 56.121 1 47.01 ? C17 66I 401 A 1 HETATM 13 C C18 66I . . . C 2 9.202 -1.201 55.97 1 44.12 ? C18 66I 401 A 1 HETATM 14 C C02 66I . . . C 2 10.713 -6.368 61.783 1 51.32 ? C02 66I 401 A 1 HETATM 15 C C04 66I . . . C 2 12.804 -6.588 60.611 1 49.23 ? C04 66I 401 A 1 HETATM 16 C C06 66I . . . C 2 11.204 -5.196 59.673 1 50.63 ? C06 66I 401 A 1 HETATM 17 C C07 66I . . . C 2 10.276 -5.464 60.743 1 52.1 ? C07 66I 401 A 1 HETATM 18 C C08 66I . . . C 2 9.098 -4.686 60.422 1 53.21 ? C08 66I 401 A 1 HETATM 19 C C36 66I . . . C 2 10.584 -3.115 55.182 1 45.68 ? C36 66I 401 A 1 HETATM 20 C C38 66I . . . C 2 10.312 -4.22 56.242 1 46.74 ? C38 66I 401 A 1 HETATM 21 F F11 66I . . . C 2 6.757 -2.703 61.261 1 64.9 ? F11 66I 401 A 1 HETATM 22 F F12 66I . . . C 2 5.754 -4.572 61.191 1 74.63 ? F12 66I 401 A 1 HETATM 23 N N01 66I . . . C 2 9.893 -6.692 62.865 1 51.2 ? N01 66I 401 A 1 HETATM 24 N N03 66I . . . C 2 11.995 -6.915 61.692 1 48.36 ? N03 66I 401 A 1 HETATM 25 N N05 66I . . . C 2 12.482 -5.75 59.589 1 48.55 ? N05 66I 401 A 1 HETATM 26 N N13 66I . . . C 2 9.29 -4.002 59.259 1 50.68 ? N13 66I 401 A 1 HETATM 27 N N14 66I . . . C 2 10.571 -4.302 58.801 1 50.74 ? N14 66I 401 A 1 HETATM 28 N N22 66I . . . C 2 6.771 -1.554 54.269 1 48.2 ? N22 66I 401 A 1 HETATM 29 N N33 66I . . . C 2 5.554 -3.177 51.09 1 42.69 ? N33 66I 401 A 1 HETATM 30 O O09 66I . . . C 2 7.947 -4.62 61.162 1 58.18 ? O09 66I 401 A 1 HETATM 31 O O16 66I . . . C 2 10.835 -2.342 57.452 1 45.13 ? O16 66I 401 A 1 HETATM 32 O O19 66I . . . C 2 8.152 -1.895 56.565 1 47.48 ? O19 66I 401 A 1 HETATM 33 O O21 66I . . . C 2 6.121 -0.409 56.491 1 52.36 ? O21 66I 401 A 1 HETATM 34 O O30 66I . . . C 2 9.266 0.355 46.501 1 40.19 ? O30 66I 401 A 1 HETATM 35 O O34 66I . . . C 2 5.709 -3.573 53.78 1 63.18 ? O34 66I 401 A 1 HETATM 36 O O35 66I . . . C 2 5.731 -2.768 56.357 1 47.96 ? O35 66I 401 A 1 HETATM 37 O O37 66I . . . C 2 11.817 -3.2 54.541 1 44.21 ? O37 66I 401 A 1 HETATM 38 O O39 66I . . . C 2 10.877 -5.386 55.771 1 47.97 ? O39 66I 401 A 1 HETATM 39 S S20 66I . . . C 2 6.54 -1.662 55.971 1 47 ? S20 66I 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 39 #