data_7RP0
#
_model_server_result.job_id            TZzHzdfhzDdUroP5zGOCPw 
_model_server_result.datetime_utc      '2024-11-24 06:24:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    7RP0 
#
_exptl.entry_id    7RP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.254 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NONAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RP0 
_cell.length_a            155.33 
_cell.length_b            155.33 
_cell.length_c            76.27 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 2 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 3 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 310.66 310.66 0 
3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 310.66 0 0 
4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 310.66 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C O THR 54 C THR 75 1_555 G K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc2 C O THR 54 C THR 75 1_555 G K K . C K 503 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc3 C O THR 54 C THR 75 1_555 H K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? 
metalc ? metalc4 C OG1 THR 54 C THR 75 1_555 H K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc5 C O THR 54 C THR 75 1_555 H K K . C K 504 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? 
metalc ? metalc6 C OG1 THR 54 C THR 75 1_555 H K K . C K 504 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc7 C O VAL 55 C VAL 76 1_555 F K K . C K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc8 C O VAL 55 C VAL 76 1_555 F K K . C K 502 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc9 C O VAL 55 C VAL 76 1_555 G K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc10 C O VAL 55 C VAL 76 1_555 G K K . C K 503 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc11 C O GLY 56 C GLY 77 1_555 E K K . C K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? 
metalc ? metalc12 C O GLY 56 C GLY 77 1_555 E K K . C K 501 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? 
metalc ? metalc13 C O GLY 56 C GLY 77 1_555 F K K . C K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc14 C O GLY 56 C GLY 77 1_555 F K K . C K 502 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc15 C O TYR 57 C TYR 78 1_555 E K K . C K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? 
metalc ? metalc16 C O TYR 57 C TYR 78 1_555 E K K . C K 501 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? 
#
_chem_comp.formula           'C9 H20 O' 
_chem_comp.formula_weight    144.254 
_chem_comp.id                F09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NONAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 F09 sing 202 n n 
C1 H11 F09 sing 203 n n 
C1 H12 F09 sing 204 n n 
C1 H13 F09 sing 205 n n 
C2 C3 F09 sing 206 n n 
C2 H21 F09 sing 207 n n 
C2 H22 F09 sing 208 n n 
C3 C4 F09 sing 209 n n 
C3 H31 F09 sing 210 n n 
C3 H32 F09 sing 211 n n 
C4 C5 F09 sing 212 n n 
C4 H41 F09 sing 213 n n 
C4 H42 F09 sing 214 n n 
C5 C6 F09 sing 215 n n 
C5 H51 F09 sing 216 n n 
C5 H52 F09 sing 217 n n 
C6 C7 F09 sing 218 n n 
C6 H61 F09 sing 219 n n 
C6 H62 F09 sing 220 n n 
C7 C8 F09 sing 221 n n 
C7 H71 F09 sing 222 n n 
C7 H72 F09 sing 223 n n 
C8 C9 F09 sing 224 n n 
C8 H81 F09 sing 225 n n 
C8 H82 F09 sing 226 n n 
C9 OXT F09 sing 227 n n 
C9 H91 F09 sing 228 n n 
C9 H92 F09 sing 229 n n 
OXT HXT F09 sing 230 n n 
#
_atom_sites.entry_id                     7RP0 
_atom_sites.fract_transf_matrix[1][1]    0.006438 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006438 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 F09 A 1 301 1002 F09 F09 . 
E 5 K C 1 501 501 K K . 
F 5 K C 1 502 502 K K . 
G 5 K C 1 503 503 K K . 
H 5 K C 1 504 504 K K . 
I 6 TBA C 1 505 510 TBA TBA . 
J 7 DGA C 1 506 1001 DGA DGA . 
K 8 HOH A 1 401 37 HOH HOH . 
K 8 HOH A 2 402 42 HOH HOH . 
K 8 HOH A 3 403 39 HOH HOH . 
K 8 HOH A 4 404 19 HOH HOH . 
K 8 HOH A 5 405 13 HOH HOH . 
K 8 HOH A 6 406 53 HOH HOH . 
K 8 HOH A 7 407 57 HOH HOH . 
K 8 HOH A 8 408 61 HOH HOH . 
L 8 HOH B 1 301 10 HOH HOH . 
L 8 HOH B 2 302 24 HOH HOH . 
L 8 HOH B 3 303 63 HOH HOH . 
L 8 HOH B 4 304 2 HOH HOH . 
L 8 HOH B 5 305 3 HOH HOH . 
L 8 HOH B 6 306 18 HOH HOH . 
L 8 HOH B 7 307 26 HOH HOH . 
L 8 HOH B 8 308 20 HOH HOH . 
L 8 HOH B 9 309 6 HOH HOH . 
L 8 HOH B 10 310 31 HOH HOH . 
L 8 HOH B 11 311 35 HOH HOH . 
L 8 HOH B 12 312 30 HOH HOH . 
L 8 HOH B 13 313 17 HOH HOH . 
L 8 HOH B 14 314 12 HOH HOH . 
L 8 HOH B 15 315 28 HOH HOH . 
L 8 HOH B 16 316 41 HOH HOH . 
L 8 HOH B 17 317 16 HOH HOH . 
L 8 HOH B 18 318 44 HOH HOH . 
L 8 HOH B 19 319 43 HOH HOH . 
L 8 HOH B 20 320 22 HOH HOH . 
L 8 HOH B 21 321 62 HOH HOH . 
L 8 HOH B 22 322 70 HOH HOH . 
M 8 HOH C 1 601 5 HOH HOH . 
M 8 HOH C 2 602 7 HOH HOH . 
M 8 HOH C 3 603 4 HOH HOH . 
M 8 HOH C 4 604 46 HOH HOH . 
M 8 HOH C 5 605 45 HOH HOH . 
M 8 HOH C 6 606 56 HOH HOH . 
M 8 HOH C 7 607 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F09 . . . D 4 156.785 134.261 -39.677 1 42.29 ? C1 F09 301 A 1 
HETATM 2 C C2 F09 . . . D 4 156.318 132.811 -39.57 1 52.84 ? C2 F09 301 A 1 
HETATM 3 C C3 F09 . . . D 4 155.136 132.721 -38.606 1 60.22 ? C3 F09 301 A 1 
HETATM 4 C C4 F09 . . . D 4 155.638 132.48 -37.183 1 54.03 ? C4 F09 301 A 1 
HETATM 5 C C5 F09 . . . D 4 155.63 130.984 -36.874 1 52.85 ? C5 F09 301 A 1 
HETATM 6 C C6 F09 . . . D 4 154.511 130.672 -35.88 1 46.11 ? C6 F09 301 A 1 
HETATM 7 C C7 F09 . . . D 4 154.763 131.418 -34.571 1 52.9 ? C7 F09 301 A 1 
HETATM 8 C C8 F09 . . . D 4 155.757 130.641 -33.71 1 54.34 ? C8 F09 301 A 1 
HETATM 9 C C9 F09 . . . D 4 154.999 129.802 -32.683 1 54.04 ? C9 F09 301 A 1 
HETATM 10 O OXT F09 . . . D 4 155.911 129.218 -31.793 1 55.14 ? OXT F09 301 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#