data_7RP0 # _model_server_result.job_id SIV99em_mKJU7kRRBE7vGg _model_server_result.datetime_utc '2024-11-08 13:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":506}' # _entry.id 7RP0 # _exptl.entry_id 7RP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RP0 _cell.length_a 155.33 _cell.length_b 155.33 _cell.length_c 76.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 310.66 310.66 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 310.66 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 310.66 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C O THR 54 C THR 75 1_555 G K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc2 C O THR 54 C THR 75 1_555 G K K . C K 503 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 C O THR 54 C THR 75 1_555 H K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc4 C OG1 THR 54 C THR 75 1_555 H K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc5 C O THR 54 C THR 75 1_555 H K K . C K 504 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc6 C OG1 THR 54 C THR 75 1_555 H K K . C K 504 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc7 C O VAL 55 C VAL 76 1_555 F K K . C K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc8 C O VAL 55 C VAL 76 1_555 F K K . C K 502 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc9 C O VAL 55 C VAL 76 1_555 G K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc10 C O VAL 55 C VAL 76 1_555 G K K . C K 503 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc11 C O GLY 56 C GLY 77 1_555 E K K . C K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? metalc ? metalc12 C O GLY 56 C GLY 77 1_555 E K K . C K 501 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? metalc ? metalc13 C O GLY 56 C GLY 77 1_555 F K K . C K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc14 C O GLY 56 C GLY 77 1_555 F K K . C K 502 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc15 C O TYR 57 C TYR 78 1_555 E K K . C K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc16 C O TYR 57 C TYR 78 1_555 E K K . C K 501 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 83 n n CA1 OA1 DGA doub 84 n n CA1 OG1 DGA sing 85 n n CA2 CA3 DGA sing 86 n n CA2 HA21 DGA sing 87 n n CA2 HA22 DGA sing 88 n n CA3 CA4 DGA sing 89 n n CA3 HA31 DGA sing 90 n n CA3 HA32 DGA sing 91 n n CA4 CA5 DGA sing 92 n n CA4 HA41 DGA sing 93 n n CA4 HA42 DGA sing 94 n n CA5 CA6 DGA sing 95 n n CA5 HA51 DGA sing 96 n n CA5 HA52 DGA sing 97 n n CA6 CA7 DGA sing 98 n n CA6 HA61 DGA sing 99 n n CA6 HA62 DGA sing 100 n n CA7 CA8 DGA sing 101 n n CA7 HA71 DGA sing 102 n n CA7 HA72 DGA sing 103 n n CA8 CA9 DGA sing 104 n n CA8 HA81 DGA sing 105 n n CA8 HA82 DGA sing 106 n n CA9 CAA DGA sing 107 n n CA9 HA91 DGA sing 108 n n CA9 HA92 DGA sing 109 n n CAA CBA DGA sing 110 n n CAA HAT1 DGA sing 111 n n CAA HAT2 DGA sing 112 n n CBA CCA DGA sing 113 n n CBA HAE1 DGA sing 114 n n CBA HAE2 DGA sing 115 n n CCA CDA DGA sing 116 n n CCA HAW1 DGA sing 117 n n CCA HAW2 DGA sing 118 n n CDA CEA DGA sing 119 n n CDA HAH1 DGA sing 120 n n CDA HAH2 DGA sing 121 n n CEA CFA DGA sing 122 n n CEA HAF1 DGA sing 123 n n CEA HAF2 DGA sing 124 n n CFA CGA DGA sing 125 n n CFA HAN1 DGA sing 126 n n CFA HAN2 DGA sing 127 n n CGA CHA DGA sing 128 n n CGA HAS1 DGA sing 129 n n CGA HAS2 DGA sing 130 n n CHA CIA DGA sing 131 n n CHA HAV1 DGA sing 132 n n CHA HAV2 DGA sing 133 n n CIA HAG1 DGA sing 134 n n CIA HAG2 DGA sing 135 n n CIA HAG3 DGA sing 136 n n CB1 CB2 DGA sing 137 n n CB1 OB1 DGA doub 138 n n CB1 OG2 DGA sing 139 n n CB2 CB3 DGA sing 140 n n CB2 HB21 DGA sing 141 n n CB2 HB22 DGA sing 142 n n CB3 CB4 DGA sing 143 n n CB3 HB31 DGA sing 144 n n CB3 HB32 DGA sing 145 n n CB4 CB5 DGA sing 146 n n CB4 HB41 DGA sing 147 n n CB4 HB42 DGA sing 148 n n CB5 CB6 DGA sing 149 n n CB5 HB51 DGA sing 150 n n CB5 HB52 DGA sing 151 n n CB6 CB7 DGA sing 152 n n CB6 HB61 DGA sing 153 n n CB6 HB62 DGA sing 154 n n CB7 CB8 DGA sing 155 n n CB7 HB71 DGA sing 156 n n CB7 HB72 DGA sing 157 n n CB8 CB9 DGA sing 158 n n CB8 HB81 DGA sing 159 n n CB8 HB82 DGA sing 160 n n CB9 CAB DGA sing 161 n n CB9 HB91 DGA sing 162 n n CB9 HB92 DGA sing 163 n n CAB CBB DGA sing 164 n n CAB HBT1 DGA sing 165 n n CAB HBT2 DGA sing 166 n n CBB CCB DGA sing 167 n n CBB HBE1 DGA sing 168 n n CBB HBE2 DGA sing 169 n n CCB CDB DGA sing 170 n n CCB HBW1 DGA sing 171 n n CCB HBW2 DGA sing 172 n n CDB CEB DGA sing 173 n n CDB HBH1 DGA sing 174 n n CDB HBH2 DGA sing 175 n n CEB CFB DGA sing 176 n n CEB HBF1 DGA sing 177 n n CEB HBF2 DGA sing 178 n n CFB CGB DGA sing 179 n n CFB HBN1 DGA sing 180 n n CFB HBN2 DGA sing 181 n n CGB CHB DGA sing 182 n n CGB HBS1 DGA sing 183 n n CGB HBS2 DGA sing 184 n n CHB CIB DGA sing 185 n n CHB HBV1 DGA sing 186 n n CHB HBV2 DGA sing 187 n n CIB HBG1 DGA sing 188 n n CIB HBG2 DGA sing 189 n n CIB HBG3 DGA sing 190 n n OG1 CG1 DGA sing 191 n n CG1 CG2 DGA sing 192 n n CG1 HG11 DGA sing 193 n n CG1 HG12 DGA sing 194 n n CG2 OG2 DGA sing 195 n n CG2 CG3 DGA sing 196 n n CG2 HG2 DGA sing 197 n n CG3 OXT DGA sing 198 n n CG3 HG31 DGA sing 199 n n CG3 HG32 DGA sing 200 n n OXT HXT DGA sing 201 n n # _atom_sites.entry_id 7RP0 _atom_sites.fract_transf_matrix[1][1] 0.006438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 301 1002 F09 F09 . E 5 K C 1 501 501 K K . F 5 K C 1 502 502 K K . G 5 K C 1 503 503 K K . H 5 K C 1 504 504 K K . I 6 TBA C 1 505 510 TBA TBA . J 7 DGA C 1 506 1001 DGA DGA . K 8 HOH A 1 401 37 HOH HOH . K 8 HOH A 2 402 42 HOH HOH . K 8 HOH A 3 403 39 HOH HOH . K 8 HOH A 4 404 19 HOH HOH . K 8 HOH A 5 405 13 HOH HOH . K 8 HOH A 6 406 53 HOH HOH . K 8 HOH A 7 407 57 HOH HOH . K 8 HOH A 8 408 61 HOH HOH . L 8 HOH B 1 301 10 HOH HOH . L 8 HOH B 2 302 24 HOH HOH . L 8 HOH B 3 303 63 HOH HOH . L 8 HOH B 4 304 2 HOH HOH . L 8 HOH B 5 305 3 HOH HOH . L 8 HOH B 6 306 18 HOH HOH . L 8 HOH B 7 307 26 HOH HOH . L 8 HOH B 8 308 20 HOH HOH . L 8 HOH B 9 309 6 HOH HOH . L 8 HOH B 10 310 31 HOH HOH . L 8 HOH B 11 311 35 HOH HOH . L 8 HOH B 12 312 30 HOH HOH . L 8 HOH B 13 313 17 HOH HOH . L 8 HOH B 14 314 12 HOH HOH . L 8 HOH B 15 315 28 HOH HOH . L 8 HOH B 16 316 41 HOH HOH . L 8 HOH B 17 317 16 HOH HOH . L 8 HOH B 18 318 44 HOH HOH . L 8 HOH B 19 319 43 HOH HOH . L 8 HOH B 20 320 22 HOH HOH . L 8 HOH B 21 321 62 HOH HOH . L 8 HOH B 22 322 70 HOH HOH . M 8 HOH C 1 601 5 HOH HOH . M 8 HOH C 2 602 7 HOH HOH . M 8 HOH C 3 603 4 HOH HOH . M 8 HOH C 4 604 46 HOH HOH . M 8 HOH C 5 605 45 HOH HOH . M 8 HOH C 6 606 56 HOH HOH . M 8 HOH C 7 607 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . J 7 164.916 139.37 -31.206 1 47.73 ? CA1 DGA 506 C 1 HETATM 2 C CA2 DGA . . . J 7 165.402 139.903 -32.587 1 47.31 ? CA2 DGA 506 C 1 HETATM 3 C CA3 DGA . . . J 7 164.215 139.959 -33.598 1 40.64 ? CA3 DGA 506 C 1 HETATM 4 C CA4 DGA . . . J 7 164.787 140.13 -35.033 1 45.54 ? CA4 DGA 506 C 1 HETATM 5 C CA5 DGA . . . J 7 163.612 140.157 -36.075 1 36.37 ? CA5 DGA 506 C 1 HETATM 6 C CA6 DGA . . . J 7 164.053 140.988 -37.339 1 48.96 ? CA6 DGA 506 C 1 HETATM 7 C CA7 DGA . . . J 7 164.373 140.005 -38.526 1 48.35 ? CA7 DGA 506 C 1 HETATM 8 C CA8 DGA . . . J 7 165.226 140.742 -39.611 1 45.42 ? CA8 DGA 506 C 1 HETATM 9 C CA9 DGA . . . J 7 164.574 140.543 -41.004 1 52.65 ? CA9 DGA 506 C 1 HETATM 10 O OA1 DGA . . . J 7 163.879 139.743 -30.748 1 54.55 ? OA1 DGA 506 C 1 HETATM 11 C CB1 DGA . . . J 7 167.941 135.565 -30.268 1 58.94 ? CB1 DGA 506 C 1 HETATM 12 C CB2 DGA . . . J 7 167.562 135.075 -31.682 1 66.55 ? CB2 DGA 506 C 1 HETATM 13 C CB3 DGA . . . J 7 167.766 136.222 -32.717 1 65.79 ? CB3 DGA 506 C 1 HETATM 14 C CB4 DGA . . . J 7 169.285 136.454 -32.972 1 62.69 ? CB4 DGA 506 C 1 HETATM 15 C CB5 DGA . . . J 7 169.463 137.661 -33.949 1 55.68 ? CB5 DGA 506 C 1 HETATM 16 C CB6 DGA . . . J 7 170.669 138.541 -33.482 1 60.68 ? CB6 DGA 506 C 1 HETATM 17 C CB7 DGA . . . J 7 171.988 138.011 -34.135 1 63.92 ? CB7 DGA 506 C 1 HETATM 18 C CB8 DGA . . . J 7 173.045 139.175 -34.27 1 60.4 ? CB8 DGA 506 C 1 HETATM 19 C CB9 DGA . . . J 7 172.327 140.518 -34.602 1 55.99 ? CB9 DGA 506 C 1 HETATM 20 C CAB DGA . . . J 7 173.05 141.217 -35.809 1 53.07 ? CAB DGA 506 C 1 HETATM 21 C CBB DGA . . . J 7 173.684 142.567 -35.342 1 53.18 ? CBB DGA 506 C 1 HETATM 22 C CCB DGA . . . J 7 175.211 142.572 -35.66 1 54.22 ? CCB DGA 506 C 1 HETATM 23 C CDB DGA . . . J 7 175.927 141.447 -34.832 1 52.41 ? CDB DGA 506 C 1 HETATM 24 C CEB DGA . . . J 7 177.462 141.667 -34.886 1 54.81 ? CEB DGA 506 C 1 HETATM 25 O OB1 DGA . . . J 7 168.853 135.07 -29.697 1 69.13 ? OB1 DGA 506 C 1 HETATM 26 O OG1 DGA . . . J 7 165.719 138.431 -30.477 1 55.15 ? OG1 DGA 506 C 1 HETATM 27 C CG1 DGA . . . J 7 164.953 137.439 -29.781 1 56.32 ? CG1 DGA 506 C 1 HETATM 28 C CG2 DGA . . . J 7 165.885 136.285 -29.339 1 54.57 ? CG2 DGA 506 C 1 HETATM 29 O OG2 DGA . . . J 7 167.203 136.613 -29.651 1 51.53 ? OG2 DGA 506 C 1 HETATM 30 C CG3 DGA . . . J 7 165.74 136.086 -27.835 1 58.03 ? CG3 DGA 506 C 1 HETATM 31 O OXT DGA . . . J 7 164.432 136.407 -27.45 1 54.13 ? OXT DGA 506 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #