data_7RP4
#
_model_server_result.job_id            bfDUdgQ1zH5hY84QipoEbQ 
_model_server_result.datetime_utc      '2024-11-24 09:51:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rp4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":204}' 
#
_entry.id    7RP4 
#
_exptl.entry_id    7RP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.97 
_cell.angle_beta          84.94 
_cell.angle_gamma         80.01 
_cell.entry_id            7RP4 
_cell.length_a            33.586 
_cell.length_b            43.985 
_cell.length_c            65.305 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 13 A CYS 12 1_555 C C MKZ . A MKZ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
covale ? covale2 B SG CYS 13 B CYS 12 1_555 F C MKZ . B MKZ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
metalc ? metalc1 A OG SER 18 A SER 17 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc2 D O2B GDP . A GDP 202 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc3 E MG MG . A MG 203 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc4 E MG MG . A MG 203 1_555 J O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc5 E MG MG . A MG 203 1_555 J O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc6 E MG MG . A MG 203 1_555 J O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc7 B OG SER 18 B SER 17 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc8 G O1B GDP . B GDP 202 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc9 H MG MG . B MG 203 1_555 K O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc10 H MG MG . B MG 203 1_555 K O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc11 H MG MG . B MG 203 1_555 K O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc12 H MG MG . B MG 203 1_555 K O HOH . B HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 174 n n 
C1 C2 GOL sing 175 n n 
C1 H11 GOL sing 176 n n 
C1 H12 GOL sing 177 n n 
O1 HO1 GOL sing 178 n n 
C2 O2 GOL sing 179 n n 
C2 C3 GOL sing 180 n n 
C2 H2 GOL sing 181 n n 
O2 HO2 GOL sing 182 n n 
C3 O3 GOL sing 183 n n 
C3 H31 GOL sing 184 n n 
C3 H32 GOL sing 185 n n 
O3 HO3 GOL sing 186 n n 
#
_atom_sites.entry_id                     7RP4 
_atom_sites.fract_transf_matrix[1][1]    0.029774 
_atom_sites.fract_transf_matrix[1][2]    -0.005244 
_atom_sites.fract_transf_matrix[1][3]    -0.002623 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023085 
_atom_sites.fract_transf_matrix[2][3]    -0.000063 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MKZ A 1 201 1 MKZ LIG . 
D 3 GDP A 1 202 3 GDP GDP . 
E 4 MG A 1 203 5 MG MG . 
F 2 MKZ B 1 201 2 MKZ LIG . 
G 3 GDP B 1 202 4 GDP GDP . 
H 4 MG B 1 203 6 MG MG . 
I 5 GOL B 1 204 1 GOL GOL . 
J 6 HOH A 1 301 115 HOH HOH . 
J 6 HOH A 2 302 51 HOH WAT . 
J 6 HOH A 3 303 114 HOH HOH . 
J 6 HOH A 4 304 78 HOH HOH . 
J 6 HOH A 5 305 161 HOH HOH . 
J 6 HOH A 6 306 143 HOH HOH . 
J 6 HOH A 7 307 81 HOH HOH . 
J 6 HOH A 8 308 71 HOH HOH . 
J 6 HOH A 9 309 80 HOH HOH . 
J 6 HOH A 10 310 58 HOH HOH . 
J 6 HOH A 11 311 25 HOH HOH . 
J 6 HOH A 12 312 2 HOH HOH . 
J 6 HOH A 13 313 134 HOH HOH . 
J 6 HOH A 14 314 137 HOH HOH . 
J 6 HOH A 15 315 17 HOH HOH . 
J 6 HOH A 16 316 11 HOH HOH . 
J 6 HOH A 17 317 13 HOH HOH . 
J 6 HOH A 18 318 52 HOH WAT . 
J 6 HOH A 19 319 119 HOH HOH . 
J 6 HOH A 20 320 23 HOH HOH . 
J 6 HOH A 21 321 52 HOH HOH . 
J 6 HOH A 22 322 36 HOH HOH . 
J 6 HOH A 23 323 53 HOH WAT . 
J 6 HOH A 24 324 65 HOH HOH . 
J 6 HOH A 25 325 6 HOH HOH . 
J 6 HOH A 26 326 10 HOH HOH . 
J 6 HOH A 27 327 151 HOH HOH . 
J 6 HOH A 28 328 69 HOH HOH . 
J 6 HOH A 29 329 42 HOH HOH . 
J 6 HOH A 30 330 93 HOH HOH . 
J 6 HOH A 31 331 16 HOH HOH . 
J 6 HOH A 32 332 122 HOH HOH . 
J 6 HOH A 33 333 54 HOH WAT . 
J 6 HOH A 34 334 85 HOH HOH . 
J 6 HOH A 35 335 127 HOH HOH . 
J 6 HOH A 36 336 63 HOH HOH . 
J 6 HOH A 37 337 120 HOH HOH . 
J 6 HOH A 38 338 147 HOH HOH . 
J 6 HOH A 39 339 64 HOH HOH . 
J 6 HOH A 40 340 110 HOH HOH . 
J 6 HOH A 41 341 123 HOH HOH . 
J 6 HOH A 42 342 61 HOH HOH . 
J 6 HOH A 43 343 88 HOH HOH . 
J 6 HOH A 44 344 89 HOH HOH . 
J 6 HOH A 45 345 5 HOH HOH . 
J 6 HOH A 46 346 155 HOH HOH . 
J 6 HOH A 47 347 39 HOH HOH . 
J 6 HOH A 48 348 138 HOH HOH . 
J 6 HOH A 49 349 26 HOH HOH . 
J 6 HOH A 50 350 86 HOH HOH . 
J 6 HOH A 51 351 107 HOH HOH . 
J 6 HOH A 52 352 100 HOH HOH . 
J 6 HOH A 53 353 9 HOH HOH . 
J 6 HOH A 54 354 90 HOH HOH . 
J 6 HOH A 55 355 156 HOH HOH . 
J 6 HOH A 56 356 96 HOH HOH . 
J 6 HOH A 57 357 159 HOH HOH . 
J 6 HOH A 58 358 144 HOH HOH . 
J 6 HOH A 59 359 98 HOH HOH . 
J 6 HOH A 60 360 148 HOH HOH . 
J 6 HOH A 61 361 54 HOH HOH . 
J 6 HOH A 62 362 35 HOH HOH . 
J 6 HOH A 63 363 132 HOH HOH . 
J 6 HOH A 64 364 130 HOH HOH . 
J 6 HOH A 65 365 24 HOH HOH . 
J 6 HOH A 66 366 125 HOH HOH . 
J 6 HOH A 67 367 152 HOH HOH . 
J 6 HOH A 68 368 53 HOH HOH . 
J 6 HOH A 69 369 158 HOH HOH . 
J 6 HOH A 70 370 111 HOH HOH . 
J 6 HOH A 71 371 106 HOH HOH . 
J 6 HOH A 72 372 128 HOH HOH . 
J 6 HOH A 73 373 50 HOH HOH . 
J 6 HOH A 74 374 149 HOH HOH . 
J 6 HOH A 75 375 94 HOH HOH . 
J 6 HOH A 76 376 157 HOH HOH . 
K 6 HOH B 1 301 97 HOH HOH . 
K 6 HOH B 2 302 34 HOH HOH . 
K 6 HOH B 3 303 61 HOH WAT . 
K 6 HOH B 4 304 99 HOH HOH . 
K 6 HOH B 5 305 8 HOH HOH . 
K 6 HOH B 6 306 59 HOH HOH . 
K 6 HOH B 7 307 41 HOH HOH . 
K 6 HOH B 8 308 84 HOH HOH . 
K 6 HOH B 9 309 49 HOH HOH . 
K 6 HOH B 10 310 79 HOH HOH . 
K 6 HOH B 11 311 64 HOH WAT . 
K 6 HOH B 12 312 124 HOH HOH . 
K 6 HOH B 13 313 51 HOH HOH . 
K 6 HOH B 14 314 4 HOH HOH . 
K 6 HOH B 15 315 12 HOH HOH . 
K 6 HOH B 16 316 62 HOH WAT . 
K 6 HOH B 17 317 60 HOH HOH . 
K 6 HOH B 18 318 63 HOH WAT . 
K 6 HOH B 19 319 91 HOH HOH . 
K 6 HOH B 20 320 103 HOH HOH . 
K 6 HOH B 21 321 43 HOH HOH . 
K 6 HOH B 22 322 31 HOH HOH . 
K 6 HOH B 23 323 27 HOH HOH . 
K 6 HOH B 24 324 145 HOH HOH . 
K 6 HOH B 25 325 75 HOH HOH . 
K 6 HOH B 26 326 3 HOH HOH . 
K 6 HOH B 27 327 109 HOH HOH . 
K 6 HOH B 28 328 29 HOH HOH . 
K 6 HOH B 29 329 40 HOH HOH . 
K 6 HOH B 30 330 37 HOH HOH . 
K 6 HOH B 31 331 14 HOH HOH . 
K 6 HOH B 32 332 48 HOH HOH . 
K 6 HOH B 33 333 73 HOH HOH . 
K 6 HOH B 34 334 95 HOH HOH . 
K 6 HOH B 35 335 44 HOH HOH . 
K 6 HOH B 36 336 56 HOH HOH . 
K 6 HOH B 37 337 72 HOH HOH . 
K 6 HOH B 38 338 15 HOH HOH . 
K 6 HOH B 39 339 7 HOH HOH . 
K 6 HOH B 40 340 153 HOH HOH . 
K 6 HOH B 41 341 55 HOH HOH . 
K 6 HOH B 42 342 68 HOH HOH . 
K 6 HOH B 43 343 82 HOH HOH . 
K 6 HOH B 44 344 70 HOH HOH . 
K 6 HOH B 45 345 116 HOH HOH . 
K 6 HOH B 46 346 141 HOH HOH . 
K 6 HOH B 47 347 62 HOH HOH . 
K 6 HOH B 48 348 135 HOH HOH . 
K 6 HOH B 49 349 142 HOH HOH . 
K 6 HOH B 50 350 113 HOH HOH . 
K 6 HOH B 51 351 101 HOH HOH . 
K 6 HOH B 52 352 118 HOH HOH . 
K 6 HOH B 53 353 22 HOH HOH . 
K 6 HOH B 54 354 30 HOH HOH . 
K 6 HOH B 55 355 108 HOH HOH . 
K 6 HOH B 56 356 126 HOH HOH . 
K 6 HOH B 57 357 87 HOH HOH . 
K 6 HOH B 58 358 133 HOH HOH . 
K 6 HOH B 59 359 139 HOH HOH . 
K 6 HOH B 60 360 45 HOH HOH . 
K 6 HOH B 61 361 160 HOH HOH . 
K 6 HOH B 62 362 140 HOH HOH . 
K 6 HOH B 63 363 121 HOH HOH . 
K 6 HOH B 64 364 129 HOH HOH . 
K 6 HOH B 65 365 154 HOH HOH . 
K 6 HOH B 66 366 32 HOH HOH . 
K 6 HOH B 67 367 18 HOH HOH . 
K 6 HOH B 68 368 66 HOH HOH . 
K 6 HOH B 69 369 104 HOH HOH . 
K 6 HOH B 70 370 131 HOH HOH . 
K 6 HOH B 71 371 83 HOH HOH . 
K 6 HOH B 72 372 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 37.8 14.228 -7.629 1 41.44 ? C1 GOL 204 B 1 
HETATM 2 O O1 GOL . . . I 5 38.149 12.908 -7.346 1 41.42 ? O1 GOL 204 B 1 
HETATM 3 C C2 GOL . . . I 5 37.311 14.27 -9.105 1 41.02 ? C2 GOL 204 B 1 
HETATM 4 O O2 GOL . . . I 5 36.865 13.031 -9.526 1 42.11 ? O2 GOL 204 B 1 
HETATM 5 C C3 GOL . . . I 5 36.178 15.326 -9.127 1 38.38 ? C3 GOL 204 B 1 
HETATM 6 O O3 GOL . . . I 5 36.606 16.369 -9.944 1 36.36 ? O3 GOL 204 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#