data_7RP9
#
_model_server_result.job_id            Dhf9qHqhj2D-7rCtSfa2GQ 
_model_server_result.datetime_utc      '2024-11-24 05:28:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7RP9 
#
_exptl.entry_id    7RP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              317.361 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RP9 
_cell.length_a            102.304 
_cell.length_b            102.304 
_cell.length_c            86.921 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 51 A SER 81 1_555 B C7 ID1 . A ID1 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.367 ? 
covale ? covale2 A OG SER 51 A SER 81 1_555 C C7 HIW . A HIW 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.357 ? 
#
_chem_comp.formula           'C12 H19 N3 O5 S' 
_chem_comp.formula_weight    317.361 
_chem_comp.id                HIW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Hydrolyzed Imipenem' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C62 C61 HIW sing 141 n n 
O62 C61 HIW sing 142 n n 
C61 C6 HIW sing 143 n n 
O71 C7 HIW doub 144 n n 
C1 C2 HIW sing 145 n n 
C1 C5 HIW sing 146 n n 
C7 C6 HIW sing 147 n n 
C7 O72 HIW sing 148 n n 
C6 C5 HIW sing 149 n n 
C2 C3 HIW sing 150 n n 
C2 S21 HIW sing 151 n n 
C5 N4 HIW sing 152 n n 
C3 N4 HIW doub 153 n n 
C3 C31 HIW sing 154 n n 
O31 C31 HIW doub 155 n n 
C31 O32 HIW sing 156 n n 
S21 C22 HIW sing 157 n n 
C22 C23 HIW sing 158 n n 
N26 C25 HIW doub 159 n n 
C25 N24 HIW sing 160 n n 
N24 C23 HIW sing 161 n n 
O32 H1 HIW sing 162 n n 
C2 H5 HIW sing 163 n n 
C1 H6 HIW sing 164 n n 
C1 H7 HIW sing 165 n n 
C5 H8 HIW sing 166 n n 
C6 H9 HIW sing 167 n n 
O72 H10 HIW sing 168 n n 
C61 H11 HIW sing 169 n n 
O62 H12 HIW sing 170 n n 
C62 H13 HIW sing 171 n n 
C62 H14 HIW sing 172 n n 
C62 H15 HIW sing 173 n n 
C22 H16 HIW sing 174 n n 
C22 H17 HIW sing 175 n n 
C23 H18 HIW sing 176 n n 
C23 H19 HIW sing 177 n n 
N24 H20 HIW sing 178 n n 
C25 H21 HIW sing 179 n n 
N26 H22 HIW sing 180 n n 
#
_atom_sites.entry_id                     7RP9 
_atom_sites.fract_transf_matrix[1][1]    0.009775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ID1 A 1 301 301 ID1 ID1 . 
C 3 HIW A 1 302 302 HIW HIW . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 5 BCT A 1 304 1 BCT BCT . 
F 6 HOH A 1 401 82 HOH HOH . 
F 6 HOH A 2 402 83 HOH HOH . 
F 6 HOH A 3 403 88 HOH HOH . 
F 6 HOH A 4 404 52 HOH HOH . 
F 6 HOH A 5 405 94 HOH HOH . 
F 6 HOH A 6 406 66 HOH HOH . 
F 6 HOH A 7 407 18 HOH HOH . 
F 6 HOH A 8 408 44 HOH HOH . 
F 6 HOH A 9 409 91 HOH HOH . 
F 6 HOH A 10 410 90 HOH HOH . 
F 6 HOH A 11 411 86 HOH HOH . 
F 6 HOH A 12 412 84 HOH HOH . 
F 6 HOH A 13 413 21 HOH HOH . 
F 6 HOH A 14 414 75 HOH HOH . 
F 6 HOH A 15 415 60 HOH HOH . 
F 6 HOH A 16 416 87 HOH HOH . 
F 6 HOH A 17 417 64 HOH HOH . 
F 6 HOH A 18 418 57 HOH HOH . 
F 6 HOH A 19 419 30 HOH HOH . 
F 6 HOH A 20 420 61 HOH HOH . 
F 6 HOH A 21 421 6 HOH HOH . 
F 6 HOH A 22 422 12 HOH HOH . 
F 6 HOH A 23 423 35 HOH HOH . 
F 6 HOH A 24 424 10 HOH HOH . 
F 6 HOH A 25 425 7 HOH HOH . 
F 6 HOH A 26 426 36 HOH HOH . 
F 6 HOH A 27 427 45 HOH HOH . 
F 6 HOH A 28 428 24 HOH HOH . 
F 6 HOH A 29 429 46 HOH HOH . 
F 6 HOH A 30 430 11 HOH HOH . 
F 6 HOH A 31 431 71 HOH HOH . 
F 6 HOH A 32 432 28 HOH HOH . 
F 6 HOH A 33 433 25 HOH HOH . 
F 6 HOH A 34 434 27 HOH HOH . 
F 6 HOH A 35 435 22 HOH HOH . 
F 6 HOH A 36 436 20 HOH HOH . 
F 6 HOH A 37 437 32 HOH HOH . 
F 6 HOH A 38 438 47 HOH HOH . 
F 6 HOH A 39 439 2 HOH HOH . 
F 6 HOH A 40 440 62 HOH HOH . 
F 6 HOH A 41 441 40 HOH HOH . 
F 6 HOH A 42 442 48 HOH HOH . 
F 6 HOH A 43 443 15 HOH HOH . 
F 6 HOH A 44 444 81 HOH HOH . 
F 6 HOH A 45 445 53 HOH HOH . 
F 6 HOH A 46 446 59 HOH HOH . 
F 6 HOH A 47 447 16 HOH HOH . 
F 6 HOH A 48 448 78 HOH HOH . 
F 6 HOH A 49 449 51 HOH HOH . 
F 6 HOH A 50 450 67 HOH HOH . 
F 6 HOH A 51 451 5 HOH HOH . 
F 6 HOH A 52 452 13 HOH HOH . 
F 6 HOH A 53 453 76 HOH HOH . 
F 6 HOH A 54 454 63 HOH HOH . 
F 6 HOH A 55 455 74 HOH HOH . 
F 6 HOH A 56 456 4 HOH HOH . 
F 6 HOH A 57 457 39 HOH HOH . 
F 6 HOH A 58 458 37 HOH HOH . 
F 6 HOH A 59 459 8 HOH HOH . 
F 6 HOH A 60 460 23 HOH HOH . 
F 6 HOH A 61 461 69 HOH HOH . 
F 6 HOH A 62 462 9 HOH HOH . 
F 6 HOH A 63 463 68 HOH HOH . 
F 6 HOH A 64 464 70 HOH HOH . 
F 6 HOH A 65 465 43 HOH HOH . 
F 6 HOH A 66 466 26 HOH HOH . 
F 6 HOH A 67 467 19 HOH HOH . 
F 6 HOH A 68 468 34 HOH HOH . 
F 6 HOH A 69 469 29 HOH HOH . 
F 6 HOH A 70 470 73 HOH HOH . 
F 6 HOH A 71 471 33 HOH HOH . 
F 6 HOH A 72 472 92 HOH HOH . 
F 6 HOH A 73 473 85 HOH HOH . 
F 6 HOH A 74 474 14 HOH HOH . 
F 6 HOH A 75 475 3 HOH HOH . 
F 6 HOH A 76 476 93 HOH HOH . 
F 6 HOH A 77 477 72 HOH HOH . 
F 6 HOH A 78 478 41 HOH HOH . 
F 6 HOH A 79 479 50 HOH HOH . 
F 6 HOH A 80 480 55 HOH HOH . 
F 6 HOH A 81 481 54 HOH HOH . 
F 6 HOH A 82 482 42 HOH HOH . 
F 6 HOH A 83 483 49 HOH HOH . 
F 6 HOH A 84 484 58 HOH HOH . 
F 6 HOH A 85 485 89 HOH HOH . 
F 6 HOH A 86 486 1 HOH HOH . 
F 6 HOH A 87 487 56 HOH HOH . 
F 6 HOH A 88 488 38 HOH HOH . 
F 6 HOH A 89 489 77 HOH HOH . 
F 6 HOH A 90 490 80 HOH HOH . 
F 6 HOH A 91 491 95 HOH HOH . 
F 6 HOH A 92 492 79 HOH HOH . 
F 6 HOH A 93 493 65 HOH HOH . 
F 6 HOH A 94 494 31 HOH HOH . 
F 6 HOH A 95 495 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O31 HIW . B . C 3 -2.631 31.878 -10.947 0.7 38.81 ? O31 HIW 302 A 1 
HETATM 2 C C31 HIW . B . C 3 -1.79 32.842 -10.745 0.7 52.71 ? C31 HIW 302 A 1 
HETATM 3 O O32 HIW . B . C 3 -2.113 33.937 -10.201 0.7 42.05 ? O32 HIW 302 A 1 
HETATM 4 C C3 HIW . B . C 3 -0.523 32.663 -11.1 0.7 40.4 ? C3 HIW 302 A 1 
HETATM 5 N N4 HIW . B . C 3 -0.06 31.469 -11.332 0.7 39.81 ? N4 HIW 302 A 1 
HETATM 6 C C2 HIW . B . C 3 0.529 33.707 -11.326 0.7 37.22 ? C2 HIW 302 A 1 
HETATM 7 C C1 HIW . B . C 3 1.426 33.038 -12.364 0.7 34.21 ? C1 HIW 302 A 1 
HETATM 8 C C5 HIW . B . C 3 1.145 31.541 -12.199 0.7 33.98 ? C5 HIW 302 A 1 
HETATM 9 C C6 HIW . B . C 3 0.838 30.753 -13.468 0.7 33.04 ? C6 HIW 302 A 1 
HETATM 10 C C7 HIW . B . C 3 -0.325 29.761 -13.271 0.7 34.61 ? C7 HIW 302 A 1 
HETATM 11 O O72 HIW . B . C 3 -1.383 29.895 -13.994 0.7 31.32 ? O72 HIW 302 A 1 
HETATM 12 C C61 HIW . B . C 3 2.117 30.011 -13.884 0.7 35.9 ? C61 HIW 302 A 1 
HETATM 13 O O62 HIW . B . C 3 3.047 30.99 -14.286 0.7 43.21 ? O62 HIW 302 A 1 
HETATM 14 C C62 HIW . B . C 3 1.947 29.086 -15.068 0.7 32.28 ? C62 HIW 302 A 1 
HETATM 15 S S21 HIW . B . C 3 1.608 33.968 -9.814 0.7 45.51 ? S21 HIW 302 A 1 
HETATM 16 C C22 HIW . B . C 3 1.233 35.752 -9.404 0.7 40.1 ? C22 HIW 302 A 1 
HETATM 17 C C23 HIW . B . C 3 2.427 36.336 -8.673 0.7 43.22 ? C23 HIW 302 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           17 
#