data_7RPA
#
_model_server_result.job_id            cmbVjAk1QiDx-23rRxDyPg 
_model_server_result.datetime_utc      '2024-11-24 08:30:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rpa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7RPA 
#
_exptl.entry_id    7RPA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              385.478 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RPA 
_cell.length_a            102.77 
_cell.length_b            102.77 
_cell.length_c            86.02 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RPA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             51 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              81 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            MER 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MER 
_struct_conn.ptnr2_auth_seq_id              302 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.463 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C17 H27 N3 O5 S' 
_chem_comp.formula_weight    385.478 
_chem_comp.id                MER 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Meropenem, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O6 MER doub 209 n n 
C1 C3 MER sing 210 n n 
C1 H1 MER sing 211 n n 
C5 C2 MER doub 212 n n 
C2 C18 MER sing 213 n n 
C2 S14 MER sing 214 n n 
C4 C3 MER sing 215 n n 
C3 C7 MER sing 216 n n 
C3 H3 MER sing 217 n n 
N10 C4 MER sing 218 n n 
C4 C18 MER sing 219 n n 
C4 H4 MER sing 220 n n 
C11 C5 MER sing 221 n n 
N10 C5 MER sing 222 n n 
O8 C7 MER sing 223 n n 
C7 C9 MER sing 224 n n 
C7 H7 MER sing 225 n n 
O8 HO8 MER sing 226 n n 
C9 H9 MER sing 227 n n 
C9 H9A MER sing 228 n n 
C9 H9B MER sing 229 n n 
N10 HN10 MER sing 230 n n 
O13 C11 MER doub 231 n n 
C11 O12 MER sing 232 n n 
O12 HO12 MER sing 233 n n 
S14 C15 MER sing 234 n n 
C16 C15 MER sing 235 n n 
C15 C21 MER sing 236 n n 
C15 H15 MER sing 237 n n 
C16 C17 MER sing 238 n n 
C16 H16 MER sing 239 n n 
C16 H16A MER sing 240 n n 
C22 C17 MER sing 241 n n 
C17 N19 MER sing 242 n n 
C17 H17 MER sing 243 n n 
C18 C20 MER sing 244 n n 
C18 H18 MER sing 245 n n 
N19 C21 MER sing 246 n n 
N19 HN19 MER sing 247 n n 
C20 H20 MER sing 248 n n 
C20 H20A MER sing 249 n n 
C20 H20B MER sing 250 n n 
C21 H21 MER sing 251 n n 
C21 H21A MER sing 252 n n 
N23 C22 MER sing 253 n n 
O24 C22 MER doub 254 n n 
C25 N23 MER sing 255 n n 
N23 C26 MER sing 256 n n 
C25 H25 MER sing 257 n n 
C25 H25A MER sing 258 n n 
C25 H25B MER sing 259 n n 
C26 H26 MER sing 260 n n 
C26 H26A MER sing 261 n n 
C26 H26B MER sing 262 n n 
#
_atom_sites.entry_id                     7RPA 
_atom_sites.fract_transf_matrix[1][1]    0.00973 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011625 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEG A 1 301 301 PEG PEG . 
C 3 MER A 1 302 1 MER MEO . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 5 BCT A 1 304 1 BCT BCT . 
F 6 HOH A 1 401 32 HOH HOH . 
F 6 HOH A 2 402 36 HOH HOH . 
F 6 HOH A 3 403 33 HOH HOH . 
F 6 HOH A 4 404 49 HOH HOH . 
F 6 HOH A 5 405 38 HOH HOH . 
F 6 HOH A 6 406 52 HOH HOH . 
F 6 HOH A 7 407 21 HOH HOH . 
F 6 HOH A 8 408 10 HOH HOH . 
F 6 HOH A 9 409 8 HOH HOH . 
F 6 HOH A 10 410 37 HOH HOH . 
F 6 HOH A 11 411 45 HOH HOH . 
F 6 HOH A 12 412 18 HOH HOH . 
F 6 HOH A 13 413 46 HOH HOH . 
F 6 HOH A 14 414 4 HOH HOH . 
F 6 HOH A 15 415 7 HOH HOH . 
F 6 HOH A 16 416 29 HOH HOH . 
F 6 HOH A 17 417 41 HOH HOH . 
F 6 HOH A 18 418 42 HOH HOH . 
F 6 HOH A 19 419 25 HOH HOH . 
F 6 HOH A 20 420 20 HOH HOH . 
F 6 HOH A 21 421 40 HOH HOH . 
F 6 HOH A 22 422 35 HOH HOH . 
F 6 HOH A 23 423 9 HOH HOH . 
F 6 HOH A 24 424 17 HOH HOH . 
F 6 HOH A 25 425 1 HOH HOH . 
F 6 HOH A 26 426 51 HOH HOH . 
F 6 HOH A 27 427 22 HOH HOH . 
F 6 HOH A 28 428 12 HOH HOH . 
F 6 HOH A 29 429 47 HOH HOH . 
F 6 HOH A 30 430 13 HOH HOH . 
F 6 HOH A 31 431 19 HOH HOH . 
F 6 HOH A 32 432 54 HOH HOH . 
F 6 HOH A 33 433 26 HOH HOH . 
F 6 HOH A 34 434 5 HOH HOH . 
F 6 HOH A 35 435 24 HOH HOH . 
F 6 HOH A 36 436 15 HOH HOH . 
F 6 HOH A 37 437 14 HOH HOH . 
F 6 HOH A 38 438 6 HOH HOH . 
F 6 HOH A 39 439 23 HOH HOH . 
F 6 HOH A 40 440 28 HOH HOH . 
F 6 HOH A 41 441 48 HOH HOH . 
F 6 HOH A 42 442 53 HOH HOH . 
F 6 HOH A 43 443 2 HOH HOH . 
F 6 HOH A 44 444 16 HOH HOH . 
F 6 HOH A 45 445 3 HOH HOH . 
F 6 HOH A 46 446 43 HOH HOH . 
F 6 HOH A 47 447 39 HOH HOH . 
F 6 HOH A 48 448 44 HOH HOH . 
F 6 HOH A 49 449 27 HOH HOH . 
F 6 HOH A 50 450 11 HOH HOH . 
F 6 HOH A 51 451 34 HOH HOH . 
F 6 HOH A 52 452 30 HOH HOH . 
F 6 HOH A 53 453 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MER . . . C 3 -0.309 29.756 -13.178 1 62.51 ? C1 MER 302 A 1 
HETATM 2 C C2 MER . . . C 3 0.178 33.632 -10.926 1 73.27 ? C2 MER 302 A 1 
HETATM 3 C C3 MER . . . C 3 0.777 30.837 -13.235 1 63.83 ? C3 MER 302 A 1 
HETATM 4 C C4 MER . . . C 3 0.854 31.592 -11.908 1 67.09 ? C4 MER 302 A 1 
HETATM 5 C C5 MER . . . C 3 -0.83 32.758 -10.751 1 75.66 ? C5 MER 302 A 1 
HETATM 6 O O6 MER . . . C 3 -1.4 29.909 -13.73 1 59.38 ? O6 MER 302 A 1 
HETATM 7 C C7 MER . . . C 3 2.148 30.224 -13.468 1 64.85 ? C7 MER 302 A 1 
HETATM 8 O O8 MER . . . C 3 3.058 31.274 -13.783 1 68.61 ? O8 MER 302 A 1 
HETATM 9 C C9 MER . . . C 3 2.13 29.282 -14.671 1 67.12 ? C9 MER 302 A 1 
HETATM 10 N N10 MER . . . C 3 -0.501 31.628 -11.374 1 71.18 ? N10 MER 302 A 1 
HETATM 11 C C11 MER . . . C 3 -2.184 32.861 -10.137 1 75.49 ? C11 MER 302 A 1 
HETATM 12 O O12 MER . . . C 3 -2.598 33.873 -9.511 1 71.5 ? O12 MER 302 A 1 
HETATM 13 O O13 MER . . . C 3 -2.959 31.883 -10.303 1 72.77 ? O13 MER 302 A 1 
HETATM 14 S S14 MER . . . C 3 0.347 35.146 -10.254 1 73.68 ? S14 MER 302 A 1 
HETATM 15 C C15 MER . . . C 3 1.708 35.188 -9.156 1 74.78 ? C15 MER 302 A 1 
HETATM 16 C C16 MER . . . C 3 1.817 36.598 -8.664 1 82.82 ? C16 MER 302 A 1 
HETATM 17 C C17 MER . . . C 3 1.786 36.477 -7.141 1 94.76 ? C17 MER 302 A 1 
HETATM 18 C C18 MER . . . C 3 1.196 33.1 -11.889 1 63.4 ? C18 MER 302 A 1 
HETATM 19 N N19 MER . . . C 3 1.051 35.242 -6.801 1 85.02 ? N19 MER 302 A 1 
HETATM 20 C C20 MER . . . C 3 1.068 33.84 -13.215 1 56.7 ? C20 MER 302 A 1 
HETATM 21 C C21 MER . . . C 3 1.327 34.351 -7.934 1 88.91 ? C21 MER 302 A 1 
HETATM 22 C C22 MER . . . C 3 1.167 37.67 -6.48 1 109.25 ? C22 MER 302 A 1 
HETATM 23 N N23 MER . . . C 3 1.997 38.549 -5.859 1 122.72 ? N23 MER 302 A 1 
HETATM 24 O O24 MER . . . C 3 -0.051 37.758 -6.528 1 112.58 ? O24 MER 302 A 1 
HETATM 25 C C25 MER . . . C 3 3.223 39.065 -6.491 1 103.28 ? C25 MER 302 A 1 
HETATM 26 C C26 MER . . . C 3 1.754 39.056 -4.492 1 109.03 ? C26 MER 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           26 
#