data_7RPB # _model_server_result.job_id Eoac3QCRzkBgutETaFfKSQ _model_server_result.datetime_utc '2024-11-05 10:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7RPB # _exptl.entry_id 7RPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RPB _cell.length_a 102.391 _cell.length_b 102.391 _cell.length_c 85.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 81 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id MER _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MER _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.471 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MER _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 MER doub 209 n n C1 C3 MER sing 210 n n C1 H1 MER sing 211 n n C5 C2 MER doub 212 n n C2 C18 MER sing 213 n n C2 S14 MER sing 214 n n C4 C3 MER sing 215 n n C3 C7 MER sing 216 n n C3 H3 MER sing 217 n n N10 C4 MER sing 218 n n C4 C18 MER sing 219 n n C4 H4 MER sing 220 n n C11 C5 MER sing 221 n n N10 C5 MER sing 222 n n O8 C7 MER sing 223 n n C7 C9 MER sing 224 n n C7 H7 MER sing 225 n n O8 HO8 MER sing 226 n n C9 H9 MER sing 227 n n C9 H9A MER sing 228 n n C9 H9B MER sing 229 n n N10 HN10 MER sing 230 n n O13 C11 MER doub 231 n n C11 O12 MER sing 232 n n O12 HO12 MER sing 233 n n S14 C15 MER sing 234 n n C16 C15 MER sing 235 n n C15 C21 MER sing 236 n n C15 H15 MER sing 237 n n C16 C17 MER sing 238 n n C16 H16 MER sing 239 n n C16 H16A MER sing 240 n n C22 C17 MER sing 241 n n C17 N19 MER sing 242 n n C17 H17 MER sing 243 n n C18 C20 MER sing 244 n n C18 H18 MER sing 245 n n N19 C21 MER sing 246 n n N19 HN19 MER sing 247 n n C20 H20 MER sing 248 n n C20 H20A MER sing 249 n n C20 H20B MER sing 250 n n C21 H21 MER sing 251 n n C21 H21A MER sing 252 n n N23 C22 MER sing 253 n n O24 C22 MER doub 254 n n C25 N23 MER sing 255 n n N23 C26 MER sing 256 n n C25 H25 MER sing 257 n n C25 H25A MER sing 258 n n C25 H25B MER sing 259 n n C26 H26 MER sing 260 n n C26 H26A MER sing 261 n n C26 H26B MER sing 262 n n # _atom_sites.entry_id 7RPB _atom_sites.fract_transf_matrix[1][1] 0.009766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MER A 1 301 1 MER MEO . C 3 BCT A 1 302 1 BCT BCT . D 3 BCT A 1 303 2 BCT BCT . E 4 HOH A 1 401 64 HOH HOH . E 4 HOH A 2 402 69 HOH HOH . E 4 HOH A 3 403 52 HOH HOH . E 4 HOH A 4 404 40 HOH HOH . E 4 HOH A 5 405 70 HOH HOH . E 4 HOH A 6 406 65 HOH HOH . E 4 HOH A 7 407 6 HOH HOH . E 4 HOH A 8 408 57 HOH HOH . E 4 HOH A 9 409 59 HOH HOH . E 4 HOH A 10 410 39 HOH HOH . E 4 HOH A 11 411 32 HOH HOH . E 4 HOH A 12 412 54 HOH HOH . E 4 HOH A 13 413 17 HOH HOH . E 4 HOH A 14 414 58 HOH HOH . E 4 HOH A 15 415 24 HOH HOH . E 4 HOH A 16 416 27 HOH HOH . E 4 HOH A 17 417 11 HOH HOH . E 4 HOH A 18 418 41 HOH HOH . E 4 HOH A 19 419 42 HOH HOH . E 4 HOH A 20 420 19 HOH HOH . E 4 HOH A 21 421 28 HOH HOH . E 4 HOH A 22 422 10 HOH HOH . E 4 HOH A 23 423 21 HOH HOH . E 4 HOH A 24 424 60 HOH HOH . E 4 HOH A 25 425 5 HOH HOH . E 4 HOH A 26 426 48 HOH HOH . E 4 HOH A 27 427 14 HOH HOH . E 4 HOH A 28 428 35 HOH HOH . E 4 HOH A 29 429 15 HOH HOH . E 4 HOH A 30 430 68 HOH HOH . E 4 HOH A 31 431 38 HOH HOH . E 4 HOH A 32 432 67 HOH HOH . E 4 HOH A 33 433 49 HOH HOH . E 4 HOH A 34 434 30 HOH HOH . E 4 HOH A 35 435 18 HOH HOH . E 4 HOH A 36 436 34 HOH HOH . E 4 HOH A 37 437 37 HOH HOH . E 4 HOH A 38 438 9 HOH HOH . E 4 HOH A 39 439 12 HOH HOH . E 4 HOH A 40 440 7 HOH HOH . E 4 HOH A 41 441 63 HOH HOH . E 4 HOH A 42 442 43 HOH HOH . E 4 HOH A 43 443 13 HOH HOH . E 4 HOH A 44 444 1 HOH HOH . E 4 HOH A 45 445 33 HOH HOH . E 4 HOH A 46 446 56 HOH HOH . E 4 HOH A 47 447 46 HOH HOH . E 4 HOH A 48 448 20 HOH HOH . E 4 HOH A 49 449 62 HOH HOH . E 4 HOH A 50 450 29 HOH HOH . E 4 HOH A 51 451 16 HOH HOH . E 4 HOH A 52 452 36 HOH HOH . E 4 HOH A 53 453 26 HOH HOH . E 4 HOH A 54 454 8 HOH HOH . E 4 HOH A 55 455 53 HOH HOH . E 4 HOH A 56 456 3 HOH HOH . E 4 HOH A 57 457 50 HOH HOH . E 4 HOH A 58 458 22 HOH HOH . E 4 HOH A 59 459 25 HOH HOH . E 4 HOH A 60 460 2 HOH HOH . E 4 HOH A 61 461 44 HOH HOH . E 4 HOH A 62 462 55 HOH HOH . E 4 HOH A 63 463 51 HOH HOH . E 4 HOH A 64 464 66 HOH HOH . E 4 HOH A 65 465 47 HOH HOH . E 4 HOH A 66 466 31 HOH HOH . E 4 HOH A 67 467 45 HOH HOH . E 4 HOH A 68 468 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MER . . . B 2 -0.24 29.743 -13.184 1 48.68 ? C1 MER 301 A 1 HETATM 2 C C2 MER . . . B 2 0.311 33.532 -10.93 1 55.05 ? C2 MER 301 A 1 HETATM 3 C C3 MER . . . B 2 0.866 30.806 -13.335 1 45.23 ? C3 MER 301 A 1 HETATM 4 C C4 MER . . . B 2 0.97 31.525 -11.994 1 44.45 ? C4 MER 301 A 1 HETATM 5 C C5 MER . . . B 2 -0.6 32.58 -10.691 1 50.61 ? C5 MER 301 A 1 HETATM 6 O O6 MER . . . B 2 -1.319 29.879 -13.75 1 44.82 ? O6 MER 301 A 1 HETATM 7 C C7 MER . . . B 2 2.196 30.106 -13.559 1 43.59 ? C7 MER 301 A 1 HETATM 8 O O8 MER . . . B 2 3.107 31.133 -13.894 1 45.24 ? O8 MER 301 A 1 HETATM 9 C C9 MER . . . B 2 2.257 29.175 -14.76 1 46.33 ? C9 MER 301 A 1 HETATM 10 N N10 MER . . . B 2 -0.318 31.449 -11.343 1 43.69 ? N10 MER 301 A 1 HETATM 11 C C11 MER . . . B 2 -1.907 32.68 -10.039 1 60.56 ? C11 MER 301 A 1 HETATM 12 O O12 MER . . . B 2 -2.162 33.691 -9.346 1 59.16 ? O12 MER 301 A 1 HETATM 13 O O13 MER . . . B 2 -2.76 31.754 -10.301 1 51.3 ? O13 MER 301 A 1 HETATM 14 S S14 MER . . . B 2 0.365 35.11 -10.315 1 57.04 ? S14 MER 301 A 1 HETATM 15 C C15 MER . . . B 2 1.854 35.155 -9.358 1 64.36 ? C15 MER 301 A 1 HETATM 16 C C16 MER . . . B 2 2.162 36.562 -8.863 1 72.79 ? C16 MER 301 A 1 HETATM 17 C C17 MER . . . B 2 2.137 36.474 -7.347 1 84.34 ? C17 MER 301 A 1 HETATM 18 C C18 MER . . . B 2 1.3 33.025 -11.932 1 43.21 ? C18 MER 301 A 1 HETATM 19 N N19 MER . . . B 2 1.798 35.092 -6.919 1 84 ? N19 MER 301 A 1 HETATM 20 C C20 MER . . . B 2 1.13 33.687 -13.304 1 40.28 ? C20 MER 301 A 1 HETATM 21 C C21 MER . . . B 2 1.679 34.262 -8.128 1 75.53 ? C21 MER 301 A 1 HETATM 22 C C22 MER . . . B 2 1.131 37.479 -6.849 1 102.77 ? C22 MER 301 A 1 HETATM 23 N N23 MER . . . B 2 -0.184 37.125 -6.636 1 117.18 ? N23 MER 301 A 1 HETATM 24 O O24 MER . . . B 2 1.602 38.599 -6.652 1 95.71 ? O24 MER 301 A 1 HETATM 25 C C25 MER . . . B 2 -1.217 37.053 -7.702 1 101.46 ? C25 MER 301 A 1 HETATM 26 C C26 MER . . . B 2 -0.699 36.803 -5.284 1 96.03 ? C26 MER 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #