data_7RPC # _model_server_result.job_id 2rnYxM4_uWGrpR3TBFKXmw _model_server_result.datetime_utc '2024-11-24 22:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7RPC # _exptl.entry_id 7RPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,4R,5S,6S)-3-{[(3S,5S)-5-carbamoylpyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RPC _cell.length_a 102.828 _cell.length_b 102.828 _cell.length_c 87.433 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H21 N3 O5 S' _chem_comp.formula_weight 355.409 _chem_comp.id 6H7 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,4R,5S,6S)-3-{[(3S,5S)-5-carbamoylpyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ertapenem # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAX C 6H7 sing 1 n n O C 6H7 doub 2 n n C CA 6H7 sing 3 n n CA N 6H7 sing 4 n n CA CB 6H7 sing 5 n n N CD 6H7 sing 6 n n CB CG 6H7 sing 7 n n CD CG 6H7 sing 8 n n CG SAK 6H7 sing 9 n n SAK CAI 6H7 sing 10 n n CAI CAH 6H7 sing 11 n n CAI CAL 6H7 doub 12 n n OAU CAM 6H7 doub 13 n n CAH CAD 6H7 sing 14 n n CAH CAS 6H7 sing 15 n n CAM CAL 6H7 sing 16 n n CAM OAT 6H7 sing 17 n n CAL NAJ 6H7 sing 18 n n CAD NAJ 6H7 sing 19 n n CAD CAB 6H7 sing 20 n n NAJ CAA 6H7 sing 21 n n CAB CAE 6H7 sing 22 n n CAB CAA 6H7 sing 23 n n CAE OAG 6H7 sing 24 n n CAE CAF 6H7 sing 25 n n CAA OAC 6H7 doub 26 n n N H1 6H7 sing 27 n n CA H3 6H7 sing 28 n n CAE H4 6H7 sing 29 n n CAF H5 6H7 sing 30 n n CAF H6 6H7 sing 31 n n CAF H7 6H7 sing 32 n n CAH H8 6H7 sing 33 n n NAX H9 6H7 sing 34 n n NAX H10 6H7 sing 35 n n CB H11 6H7 sing 36 n n CB H12 6H7 sing 37 n n CG H13 6H7 sing 38 n n CD H14 6H7 sing 39 n n CD H15 6H7 sing 40 n n CAS H16 6H7 sing 41 n n CAS H17 6H7 sing 42 n n CAS H18 6H7 sing 43 n n OAT H19 6H7 sing 44 n n CAD H20 6H7 sing 45 n n CAB H21 6H7 sing 46 n n OAG H22 6H7 sing 47 n n # _atom_sites.entry_id 7RPC _atom_sites.fract_transf_matrix[1][1] 0.009725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BCT A 1 301 301 BCT BCT . C 3 6H7 A 1 302 1 6H7 3RG . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 HOH A 1 401 34 HOH HOH . E 5 HOH A 2 402 26 HOH HOH . E 5 HOH A 3 403 16 HOH HOH . E 5 HOH A 4 404 30 HOH HOH . E 5 HOH A 5 405 3 HOH HOH . E 5 HOH A 6 406 21 HOH HOH . E 5 HOH A 7 407 5 HOH HOH . E 5 HOH A 8 408 15 HOH HOH . E 5 HOH A 9 409 8 HOH HOH . E 5 HOH A 10 410 27 HOH HOH . E 5 HOH A 11 411 23 HOH HOH . E 5 HOH A 12 412 17 HOH HOH . E 5 HOH A 13 413 25 HOH HOH . E 5 HOH A 14 414 11 HOH HOH . E 5 HOH A 15 415 12 HOH HOH . E 5 HOH A 16 416 18 HOH HOH . E 5 HOH A 17 417 33 HOH HOH . E 5 HOH A 18 418 14 HOH HOH . E 5 HOH A 19 419 4 HOH HOH . E 5 HOH A 20 420 7 HOH HOH . E 5 HOH A 21 421 19 HOH HOH . E 5 HOH A 22 422 10 HOH HOH . E 5 HOH A 23 423 35 HOH HOH . E 5 HOH A 24 424 13 HOH HOH . E 5 HOH A 25 425 20 HOH HOH . E 5 HOH A 26 426 6 HOH HOH . E 5 HOH A 27 427 9 HOH HOH . E 5 HOH A 28 428 29 HOH HOH . E 5 HOH A 29 429 2 HOH HOH . E 5 HOH A 30 430 28 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 24 HOH HOH . E 5 HOH A 33 433 1 HOH HOH . E 5 HOH A 34 434 32 HOH HOH . E 5 HOH A 35 435 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 6H7 . . . C 3 31.983 -3.072 4.097 1 82.21 ? C 6H7 302 A 1 HETATM 2 N N 6H7 . . . C 3 33.683 -3.349 6.008 1 83.71 ? N 6H7 302 A 1 HETATM 3 O O 6H7 . . . C 3 32.012 -1.891 3.731 1 73.6 ? O 6H7 302 A 1 HETATM 4 C CA 6H7 . . . C 3 32.272 -3.51 5.565 1 79.83 ? CA 6H7 302 A 1 HETATM 5 C CAE 6H7 . . . C 3 37.039 0.733 12.458 1 88.99 ? CAE 6H7 302 A 1 HETATM 6 C CAF 6H7 . . . C 3 37.07 2.051 13.254 1 71.91 ? CAF 6H7 302 A 1 HETATM 7 C CAH 6H7 . . . C 3 34.488 -1.153 10.198 1 74.37 ? CAH 6H7 302 A 1 HETATM 8 C CAL 6H7 . . . C 3 32.978 0.595 10.626 1 79.99 ? CAL 6H7 302 A 1 HETATM 9 C CAM 6H7 . . . C 3 31.919 1.632 10.61 1 72.3 ? CAM 6H7 302 A 1 HETATM 10 N NAX 6H7 . . . C 3 31.66 -4.026 3.19 1 69.18 ? NAX 6H7 302 A 1 HETATM 11 C CB 6H7 . . . C 3 31.479 -2.744 6.639 1 75.94 ? CB 6H7 302 A 1 HETATM 12 C CG 6H7 . . . C 3 32.403 -2.544 7.842 1 78.67 ? CG 6H7 302 A 1 HETATM 13 C CD 6H7 . . . C 3 33.763 -2.417 7.171 1 82.01 ? CD 6H7 302 A 1 HETATM 14 S SAK 6H7 . . . C 3 31.926 -1.227 8.955 1 66.21 ? SAK 6H7 302 A 1 HETATM 15 C CAI 6H7 . . . C 3 33.115 -0.557 9.934 1 76.17 ? CAI 6H7 302 A 1 HETATM 16 C CAS 6H7 . . . C 3 34.37 -2.358 11.118 1 81.98 ? CAS 6H7 302 A 1 HETATM 17 O OAU 6H7 . . . C 3 30.885 1.46 9.939 1 67.35 ? OAU 6H7 302 A 1 HETATM 18 O OAT 6H7 . . . C 3 32.074 2.694 11.261 1 69.22 ? OAT 6H7 302 A 1 HETATM 19 N NAJ 6H7 . . . C 3 34.091 0.635 11.354 1 86.28 ? NAJ 6H7 302 A 1 HETATM 20 C CAD 6H7 . . . C 3 35.28 -0.013 10.853 1 79.43 ? CAD 6H7 302 A 1 HETATM 21 C CAB 6H7 . . . C 3 35.688 0.007 12.351 1 85.33 ? CAB 6H7 302 A 1 HETATM 22 C CAA 6H7 . . . C 3 34.469 0.846 12.599 1 89.99 ? CAA 6H7 302 A 1 HETATM 23 O OAC 6H7 . . . C 3 34.04 1.435 13.58 1 80.83 ? OAC 6H7 302 A 1 HETATM 24 O OAG 6H7 . . . C 3 38.003 -0.199 12.971 1 82.54 ? OAG 6H7 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #