data_7RPD
#
_model_server_result.job_id            4ZYRqfBvaRxmOrTi4-2r5Q 
_model_server_result.datetime_utc      '2024-11-13 04:47:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7RPD 
#
_exptl.entry_id    7RPD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.531 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RPD 
_cell.length_a            102.696 
_cell.length_b            102.696 
_cell.length_c            85.803 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RPD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             51 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              81 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            CAA 
_struct_conn.ptnr2_label_comp_id            1RG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             1RG 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.466 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C22 H27 N3 O7 S' 
_chem_comp.formula_weight    477.531 
_chem_comp.id                1RG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ERTAPENEM, bound form PRE-ISOMERIZED' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O 1RG doub 1 n n 
C CA 1RG sing 2 n n 
C NAX 1RG sing 3 n n 
N CA 1RG sing 4 n n 
N CD 1RG sing 5 n n 
CA CB 1RG sing 6 n n 
CB CG 1RG sing 7 n n 
CD CG 1RG sing 8 n n 
CG SAK 1RG sing 9 n n 
CAA CAB 1RG sing 10 n n 
CAA OAC 1RG doub 11 n n 
CAB CAD 1RG sing 12 n n 
CAB CAE 1RG sing 13 n n 
CAD CAH 1RG sing 14 n n 
CAD NAJ 1RG sing 15 n n 
CAE CAF 1RG sing 16 n n 
CAE OAG 1RG sing 17 n n 
CAH CAI 1RG sing 18 n n 
CAH CAS 1RG sing 19 n n 
CAI SAK 1RG sing 20 n n 
CAI CAL 1RG doub 21 n n 
NAJ CAL 1RG sing 22 n n 
CAL CAM 1RG sing 23 n n 
CAM OAT 1RG doub 24 n n 
CAM OAU 1RG sing 25 n n 
NAX CAY 1RG sing 26 n n 
CAY CAZ 1RG doub 27 n y 
CAY CBD 1RG sing 28 n y 
CAZ CBA 1RG sing 29 n y 
CBA CBB 1RG doub 30 n y 
CBA CBE 1RG sing 31 n n 
CBB CBC 1RG sing 32 n y 
CBC CBD 1RG doub 33 n y 
CBE OBF 1RG sing 34 n n 
CBE OBG 1RG doub 35 n n 
N HN 1RG sing 36 n n 
CA HA 1RG sing 37 n n 
CB HB 1RG sing 38 n n 
CB HBA 1RG sing 39 n n 
CD HD 1RG sing 40 n n 
CD HDA 1RG sing 41 n n 
CG HG 1RG sing 42 n n 
CAA HAA 1RG sing 43 n n 
CAB HAB 1RG sing 44 n n 
CAD HAD 1RG sing 45 n n 
CAE HAE 1RG sing 46 n n 
CAF HAF 1RG sing 47 n n 
CAF HAFA 1RG sing 48 n n 
CAF HAFB 1RG sing 49 n n 
OAG HOAG 1RG sing 50 n n 
CAH HAH 1RG sing 51 n n 
NAJ HNAJ 1RG sing 52 n n 
CAS HAS 1RG sing 53 n n 
CAS HASA 1RG sing 54 n n 
CAS HASB 1RG sing 55 n n 
NAX HNAX 1RG sing 56 n n 
CAZ HAZ 1RG sing 57 n n 
CBB HBB 1RG sing 58 n n 
CBC HBC 1RG sing 59 n n 
CBD HBD 1RG sing 60 n n 
OAU HOAU 1RG sing 61 n n 
OBF HOBF 1RG sing 62 n n 
#
_atom_sites.entry_id                     7RPD 
_atom_sites.fract_transf_matrix[1][1]    0.009737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 1RG A 1 301 1 1RG 1RG . 
C 3 BCT A 1 302 1 BCT BCT . 
D 3 BCT A 1 303 2 BCT BCT . 
E 4 SO4 A 1 304 1 SO4 SO4 . 
F 5 HOH A 1 401 90 HOH HOH . 
F 5 HOH A 2 402 54 HOH HOH . 
F 5 HOH A 3 403 27 HOH HOH . 
F 5 HOH A 4 404 67 HOH HOH . 
F 5 HOH A 5 405 31 HOH HOH . 
F 5 HOH A 6 406 89 HOH HOH . 
F 5 HOH A 7 407 97 HOH HOH . 
F 5 HOH A 8 408 80 HOH HOH . 
F 5 HOH A 9 409 82 HOH HOH . 
F 5 HOH A 10 410 49 HOH HOH . 
F 5 HOH A 11 411 76 HOH HOH . 
F 5 HOH A 12 412 21 HOH HOH . 
F 5 HOH A 13 413 28 HOH HOH . 
F 5 HOH A 14 414 56 HOH HOH . 
F 5 HOH A 15 415 84 HOH HOH . 
F 5 HOH A 16 416 46 HOH HOH . 
F 5 HOH A 17 417 95 HOH HOH . 
F 5 HOH A 18 418 99 HOH HOH . 
F 5 HOH A 19 419 92 HOH HOH . 
F 5 HOH A 20 420 14 HOH HOH . 
F 5 HOH A 21 421 71 HOH HOH . 
F 5 HOH A 22 422 81 HOH HOH . 
F 5 HOH A 23 423 62 HOH HOH . 
F 5 HOH A 24 424 50 HOH HOH . 
F 5 HOH A 25 425 33 HOH HOH . 
F 5 HOH A 26 426 34 HOH HOH . 
F 5 HOH A 27 427 75 HOH HOH . 
F 5 HOH A 28 428 38 HOH HOH . 
F 5 HOH A 29 429 88 HOH HOH . 
F 5 HOH A 30 430 15 HOH HOH . 
F 5 HOH A 31 431 73 HOH HOH . 
F 5 HOH A 32 432 36 HOH HOH . 
F 5 HOH A 33 433 10 HOH HOH . 
F 5 HOH A 34 434 23 HOH HOH . 
F 5 HOH A 35 435 35 HOH HOH . 
F 5 HOH A 36 436 60 HOH HOH . 
F 5 HOH A 37 437 91 HOH HOH . 
F 5 HOH A 38 438 43 HOH HOH . 
F 5 HOH A 39 439 98 HOH HOH . 
F 5 HOH A 40 440 61 HOH HOH . 
F 5 HOH A 41 441 55 HOH HOH . 
F 5 HOH A 42 442 48 HOH HOH . 
F 5 HOH A 43 443 68 HOH HOH . 
F 5 HOH A 44 444 22 HOH HOH . 
F 5 HOH A 45 445 4 HOH HOH . 
F 5 HOH A 46 446 86 HOH HOH . 
F 5 HOH A 47 447 83 HOH HOH . 
F 5 HOH A 48 448 16 HOH HOH . 
F 5 HOH A 49 449 78 HOH HOH . 
F 5 HOH A 50 450 53 HOH HOH . 
F 5 HOH A 51 451 37 HOH HOH . 
F 5 HOH A 52 452 41 HOH HOH . 
F 5 HOH A 53 453 101 HOH HOH . 
F 5 HOH A 54 454 13 HOH HOH . 
F 5 HOH A 55 455 2 HOH HOH . 
F 5 HOH A 56 456 51 HOH HOH . 
F 5 HOH A 57 457 1 HOH HOH . 
F 5 HOH A 58 458 24 HOH HOH . 
F 5 HOH A 59 459 32 HOH HOH . 
F 5 HOH A 60 460 11 HOH HOH . 
F 5 HOH A 61 461 57 HOH HOH . 
F 5 HOH A 62 462 79 HOH HOH . 
F 5 HOH A 63 463 19 HOH HOH . 
F 5 HOH A 64 464 17 HOH HOH . 
F 5 HOH A 65 465 26 HOH HOH . 
F 5 HOH A 66 466 94 HOH HOH . 
F 5 HOH A 67 467 58 HOH HOH . 
F 5 HOH A 68 468 25 HOH HOH . 
F 5 HOH A 69 469 12 HOH HOH . 
F 5 HOH A 70 470 8 HOH HOH . 
F 5 HOH A 71 471 72 HOH HOH . 
F 5 HOH A 72 472 30 HOH HOH . 
F 5 HOH A 73 473 6 HOH HOH . 
F 5 HOH A 74 474 96 HOH HOH . 
F 5 HOH A 75 475 100 HOH HOH . 
F 5 HOH A 76 476 69 HOH HOH . 
F 5 HOH A 77 477 5 HOH HOH . 
F 5 HOH A 78 478 40 HOH HOH . 
F 5 HOH A 79 479 64 HOH HOH . 
F 5 HOH A 80 480 18 HOH HOH . 
F 5 HOH A 81 481 85 HOH HOH . 
F 5 HOH A 82 482 102 HOH HOH . 
F 5 HOH A 83 483 39 HOH HOH . 
F 5 HOH A 84 484 87 HOH HOH . 
F 5 HOH A 85 485 42 HOH HOH . 
F 5 HOH A 86 486 9 HOH HOH . 
F 5 HOH A 87 487 70 HOH HOH . 
F 5 HOH A 88 488 59 HOH HOH . 
F 5 HOH A 89 489 3 HOH HOH . 
F 5 HOH A 90 490 44 HOH HOH . 
F 5 HOH A 91 491 63 HOH HOH . 
F 5 HOH A 92 492 7 HOH HOH . 
F 5 HOH A 93 493 29 HOH HOH . 
F 5 HOH A 94 494 47 HOH HOH . 
F 5 HOH A 95 495 74 HOH HOH . 
F 5 HOH A 96 496 77 HOH HOH . 
F 5 HOH A 97 497 65 HOH HOH . 
F 5 HOH A 98 498 66 HOH HOH . 
F 5 HOH A 99 499 45 HOH HOH . 
F 5 HOH A 100 500 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 1RG . . . B 2 0.569 37.33 -6.892 1 64.04 ? C 1RG 301 A 1 
HETATM 2 N N 1RG . . . B 2 2.223 35.359 -6.901 1 81.03 ? N 1RG 301 A 1 
HETATM 3 C CA 1RG . . . B 2 1.942 36.754 -7.28 1 77.1 ? CA 1RG 301 A 1 
HETATM 4 C CB 1RG . . . B 2 2.169 36.717 -8.799 1 69.5 ? CB 1RG 301 A 1 
HETATM 5 C CD 1RG . . . B 2 1.88 34.432 -7.989 1 65.73 ? CD 1RG 301 A 1 
HETATM 6 C CG 1RG . . . B 2 1.991 35.266 -9.255 1 60.4 ? CG 1RG 301 A 1 
HETATM 7 C CAA 1RG . . . B 2 -0.37 29.79 -13.232 1 44.69 ? CAA 1RG 301 A 1 
HETATM 8 C CAB 1RG . . . B 2 0.754 30.784 -13.299 1 36.02 ? CAB 1RG 301 A 1 
HETATM 9 O OAC 1RG . . . B 2 -1.413 29.952 -13.873 1 40.69 ? OAC 1RG 301 A 1 
HETATM 10 C CAD 1RG . . . B 2 0.826 31.529 -12.013 1 38.86 ? CAD 1RG 301 A 1 
HETATM 11 C CAE 1RG . . . B 2 2.109 30.102 -13.517 1 39.96 ? CAE 1RG 301 A 1 
HETATM 12 C CAF 1RG . . . B 2 2.24 29.387 -14.841 1 37.56 ? CAF 1RG 301 A 1 
HETATM 13 O OAG 1RG . . . B 2 3.065 31.149 -13.503 1 42.66 ? OAG 1RG 301 A 1 
HETATM 14 C CAH 1RG . . . B 2 1.239 33.012 -11.939 1 41.73 ? CAH 1RG 301 A 1 
HETATM 15 C CAI 1RG . . . B 2 0.282 33.572 -10.931 1 46.65 ? CAI 1RG 301 A 1 
HETATM 16 N NAJ 1RG . . . B 2 -0.522 31.554 -11.464 1 40.88 ? NAJ 1RG 301 A 1 
HETATM 17 S SAK 1RG . . . B 2 0.48 35.185 -10.261 1 49.46 ? SAK 1RG 301 A 1 
HETATM 18 C CAL 1RG . . . B 2 -0.744 32.675 -10.749 1 46.88 ? CAL 1RG 301 A 1 
HETATM 19 C CAM 1RG . . . B 2 -2.061 32.801 -10.037 1 55.03 ? CAM 1RG 301 A 1 
HETATM 20 C CAS 1RG . . . B 2 1.135 33.817 -13.22 1 36.89 ? CAS 1RG 301 A 1 
HETATM 21 O OAT 1RG . . . B 2 -2.192 33.713 -9.252 1 49.11 ? OAT 1RG 301 A 1 
HETATM 22 O OAU 1RG . . . B 2 -2.926 31.96 -10.318 1 49.14 ? OAU 1RG 301 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#