data_7RPH # _model_server_result.job_id 7vxz6Ak7R_n9xkGSpMSaow _model_server_result.datetime_utc '2024-11-21 23:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":1636}' # _entry.id 7RPH # _exptl.entry_id 7RPH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RPH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 GA N N ? 5 HA N N ? 5 IA N N ? 5 JA N N ? 5 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 292 1_555 A SG CYS 179 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 153 A CYS 322 1_555 A SG CYS 197 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 170 A CYS 339 1_555 A SG CYS 178 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 215 A CYS 384 1_555 A SG CYS 248 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 228 A CYS 397 1_555 A SG CYS 241 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 A SG CYS 660 A CYS 829 1_555 A SG CYS 680 A CYS 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 A SG CYS 694 A CYS 863 1_555 A SG CYS 703 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 702 A CYS 871 1_555 A SG CYS 718 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A ND2 ASN 193 A ASN 362 1_555 JA C1 NAG . A NAG 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 221 A ASN 390 1_555 KA C1 NAG . A NAG 1636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 306 A ASN 475 1_555 HA C1 NAG . A NAG 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 665 A ASN 834 1_555 IA C1 NAG . A NAG 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 A ND2 ASN 746 A ASN 915 1_555 GA C1 NAG . A NAG 1632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O GLY 398 A GLY 567 1_555 C NA NA . A NA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A OD1 ASP 402 A ASP 571 1_555 C NA NA . A NA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc3 A OD1 ASP 403 A ASP 572 1_555 D NA NA . A NA 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A OD2 ASP 403 A ASP 572 1_555 D NA NA . A NA 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 A O MET 438 A MET 607 1_555 D NA NA . A NA 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc6 A O THR 441 A THR 610 1_555 B NA NA . A NA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc7 A OG1 THR 441 A THR 610 1_555 D NA NA . A NA 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc8 A OG SER 442 A SER 611 1_555 D NA NA . A NA 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc9 A OG1 THR 444 A THR 613 1_555 B NA NA . A NA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 A OG1 THR 445 A THR 614 1_555 B NA NA . A NA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc11 A O GLY 876 A GLY 1045 1_555 B NA NA . A NA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc12 A OD1 ASP 880 A ASP 1049 1_555 B NA NA . A NA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc13 A O ALA 915 A ALA 1084 1_555 C NA NA . A NA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc14 A OG1 THR 918 A THR 1087 1_555 C NA NA . A NA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc15 A OG1 THR 919 A THR 1088 1_555 C NA NA . A NA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc16 D NA NA . A NA 1603 1_555 LA O HOH . A HOH 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 397 n n C1 O1 NAG sing 398 n n C1 O5 NAG sing 399 n n C1 H1 NAG sing 400 n n C2 C3 NAG sing 401 n n C2 N2 NAG sing 402 n n C2 H2 NAG sing 403 n n C3 C4 NAG sing 404 n n C3 O3 NAG sing 405 n n C3 H3 NAG sing 406 n n C4 C5 NAG sing 407 n n C4 O4 NAG sing 408 n n C4 H4 NAG sing 409 n n C5 C6 NAG sing 410 n n C5 O5 NAG sing 411 n n C5 H5 NAG sing 412 n n C6 O6 NAG sing 413 n n C6 H61 NAG sing 414 n n C6 H62 NAG sing 415 n n C7 C8 NAG sing 416 n n C7 N2 NAG sing 417 n n C7 O7 NAG doub 418 n n C8 H81 NAG sing 419 n n C8 H82 NAG sing 420 n n C8 H83 NAG sing 421 n n N2 HN2 NAG sing 422 n n O1 HO1 NAG sing 423 n n O3 HO3 NAG sing 424 n n O4 HO4 NAG sing 425 n n O6 HO6 NAG sing 426 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7RPH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1601 1 NA NA . C 2 NA A 1 1602 2 NA NA . D 2 NA A 1 1603 3 NA NA . E 3 Y01 A 1 1604 2101 Y01 Y01 . F 3 Y01 A 1 1605 2601 Y01 Y01 . G 3 Y01 A 1 1606 2201 Y01 Y01 . H 3 Y01 A 1 1607 1201 Y01 Y01 . I 3 Y01 A 1 1608 1601 Y01 Y01 . J 3 Y01 A 1 1609 2701 Y01 Y01 . K 3 Y01 A 1 1610 2301 Y01 Y01 . L 3 Y01 A 1 1611 1401 Y01 Y01 . M 3 Y01 A 1 1612 2501 Y01 Y01 . N 3 Y01 A 1 1613 2001 Y01 Y01 . O 3 Y01 A 1 1614 1701 Y01 Y01 . P 3 Y01 A 1 1615 1901 Y01 Y01 . Q 3 Y01 A 1 1616 1301 Y01 Y01 . R 3 Y01 A 1 1617 1801 Y01 Y01 . S 3 Y01 A 1 1618 2401 Y01 Y01 . T 3 Y01 A 1 1619 1501 Y01 Y01 . U 3 Y01 A 1 1620 2801 Y01 Y01 . V 3 Y01 A 1 1621 2901 Y01 Y01 . W 3 Y01 A 1 1622 3001 Y01 Y01 . X 3 Y01 A 1 1623 3002 Y01 Y01 . Y 3 Y01 A 1 1624 3003 Y01 Y01 . Z 3 Y01 A 1 1625 3004 Y01 Y01 . AA 3 Y01 A 1 1626 3005 Y01 Y01 . BA 3 Y01 A 1 1627 3006 Y01 Y01 . CA 3 Y01 A 1 1628 3007 Y01 Y01 . DA 3 Y01 A 1 1629 3008 Y01 Y01 . EA 4 AV0 A 1 1630 1201 AV0 AV0 . FA 4 AV0 A 1 1631 1301 AV0 AV0 . GA 5 NAG A 1 1632 1201 NAG NAG . HA 5 NAG A 1 1633 1202 NAG NAG . IA 5 NAG A 1 1634 1203 NAG NAG . JA 5 NAG A 1 1635 1204 NAG NAG . KA 5 NAG A 1 1636 1205 NAG NAG . LA 6 HOH A 1 1701 16 HOH HOH . LA 6 HOH A 2 1702 13 HOH HOH . LA 6 HOH A 3 1703 43 HOH HOH . LA 6 HOH A 4 1704 2 HOH HOH . LA 6 HOH A 5 1705 20 HOH HOH . LA 6 HOH A 6 1706 68 HOH HOH . LA 6 HOH A 7 1707 88 HOH HOH . LA 6 HOH A 8 1708 12 HOH HOH . LA 6 HOH A 9 1709 57 HOH HOH . LA 6 HOH A 10 1710 111 HOH HOH . LA 6 HOH A 11 1711 38 HOH HOH . LA 6 HOH A 12 1712 9 HOH HOH . LA 6 HOH A 13 1713 8 HOH HOH . LA 6 HOH A 14 1714 56 HOH HOH . LA 6 HOH A 15 1715 119 HOH HOH . LA 6 HOH A 16 1716 58 HOH HOH . LA 6 HOH A 17 1717 78 HOH HOH . LA 6 HOH A 18 1718 59 HOH HOH . LA 6 HOH A 19 1719 21 HOH HOH . LA 6 HOH A 20 1720 112 HOH HOH . LA 6 HOH A 21 1721 55 HOH HOH . LA 6 HOH A 22 1722 73 HOH HOH . LA 6 HOH A 23 1723 17 HOH HOH . LA 6 HOH A 24 1724 41 HOH HOH . LA 6 HOH A 25 1725 54 HOH HOH . LA 6 HOH A 26 1726 109 HOH HOH . LA 6 HOH A 27 1727 23 HOH HOH . LA 6 HOH A 28 1728 36 HOH HOH . LA 6 HOH A 29 1729 29 HOH HOH . LA 6 HOH A 30 1730 33 HOH HOH . LA 6 HOH A 31 1731 35 HOH HOH . LA 6 HOH A 32 1732 72 HOH HOH . LA 6 HOH A 33 1733 22 HOH HOH . LA 6 HOH A 34 1734 19 HOH HOH . LA 6 HOH A 35 1735 80 HOH HOH . LA 6 HOH A 36 1736 85 HOH HOH . LA 6 HOH A 37 1737 118 HOH HOH . LA 6 HOH A 38 1738 18 HOH HOH . LA 6 HOH A 39 1739 3 HOH HOH . LA 6 HOH A 40 1740 76 HOH HOH . LA 6 HOH A 41 1741 11 HOH HOH . LA 6 HOH A 42 1742 96 HOH HOH . LA 6 HOH A 43 1743 1 HOH HOH . LA 6 HOH A 44 1744 5 HOH HOH . LA 6 HOH A 45 1745 31 HOH HOH . LA 6 HOH A 46 1746 95 HOH HOH . LA 6 HOH A 47 1747 6 HOH HOH . LA 6 HOH A 48 1748 27 HOH HOH . LA 6 HOH A 49 1749 87 HOH HOH . LA 6 HOH A 50 1750 67 HOH HOH . LA 6 HOH A 51 1751 44 HOH HOH . LA 6 HOH A 52 1752 82 HOH HOH . LA 6 HOH A 53 1753 24 HOH HOH . LA 6 HOH A 54 1754 113 HOH HOH . LA 6 HOH A 55 1755 28 HOH HOH . LA 6 HOH A 56 1756 63 HOH HOH . LA 6 HOH A 57 1757 10 HOH HOH . LA 6 HOH A 58 1758 46 HOH HOH . LA 6 HOH A 59 1759 79 HOH HOH . LA 6 HOH A 60 1760 83 HOH HOH . LA 6 HOH A 61 1761 45 HOH HOH . LA 6 HOH A 62 1762 32 HOH HOH . LA 6 HOH A 63 1763 84 HOH HOH . LA 6 HOH A 64 1764 51 HOH HOH . LA 6 HOH A 65 1765 26 HOH HOH . LA 6 HOH A 66 1766 86 HOH HOH . LA 6 HOH A 67 1767 40 HOH HOH . LA 6 HOH A 68 1768 25 HOH HOH . LA 6 HOH A 69 1769 110 HOH HOH . LA 6 HOH A 70 1770 15 HOH HOH . LA 6 HOH A 71 1771 37 HOH HOH . LA 6 HOH A 72 1772 66 HOH HOH . LA 6 HOH A 73 1773 4 HOH HOH . LA 6 HOH A 74 1774 34 HOH HOH . LA 6 HOH A 75 1775 64 HOH HOH . LA 6 HOH A 76 1776 7 HOH HOH . LA 6 HOH A 77 1777 30 HOH HOH . LA 6 HOH A 78 1778 99 HOH HOH . LA 6 HOH A 79 1779 47 HOH HOH . LA 6 HOH A 80 1780 14 HOH HOH . LA 6 HOH A 81 1781 115 HOH HOH . LA 6 HOH A 82 1782 114 HOH HOH . LA 6 HOH A 83 1783 71 HOH HOH . LA 6 HOH A 84 1784 116 HOH HOH . LA 6 HOH A 85 1785 65 HOH HOH . LA 6 HOH A 86 1786 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . KA 5 112.249 129.54 82.314 1 114.4 ? C1 NAG 1636 A 1 HETATM 2 C C2 NAG . . . KA 5 112.269 128.028 82.641 1 114.4 ? C2 NAG 1636 A 1 HETATM 3 C C3 NAG . . . KA 5 111.784 127.207 81.429 1 114.4 ? C3 NAG 1636 A 1 HETATM 4 C C4 NAG . . . KA 5 110.444 127.74 80.895 1 114.4 ? C4 NAG 1636 A 1 HETATM 5 C C5 NAG . . . KA 5 110.522 129.241 80.573 1 114.4 ? C5 NAG 1636 A 1 HETATM 6 C C6 NAG . . . KA 5 109.189 129.83 80.091 1 114.4 ? C6 NAG 1636 A 1 HETATM 7 C C7 NAG . . . KA 5 113.903 126.617 83.828 1 114.4 ? C7 NAG 1636 A 1 HETATM 8 C C8 NAG . . . KA 5 115.366 126.478 84.274 1 114.4 ? C8 NAG 1636 A 1 HETATM 9 N N2 NAG . . . KA 5 113.627 127.636 83.024 1 114.4 ? N2 NAG 1636 A 1 HETATM 10 O O3 NAG . . . KA 5 111.602 125.808 81.795 1 114.4 ? O3 NAG 1636 A 1 HETATM 11 O O4 NAG . . . KA 5 110.13 127.002 79.695 1 114.4 ? O4 NAG 1636 A 1 HETATM 12 O O5 NAG . . . KA 5 110.938 129.948 81.808 1 114.4 ? O5 NAG 1636 A 1 HETATM 13 O O6 NAG . . . KA 5 109.375 131.217 79.743 1 114.4 ? O6 NAG 1636 A 1 HETATM 14 O O7 NAG . . . KA 5 113.026 125.831 84.176 1 114.4 ? O7 NAG 1636 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 14 #