data_7RPI # _model_server_result.job_id VXqrqHem3JR-fkEmqOPmCA _model_server_result.datetime_utc '2024-11-14 23:47:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":2132}' # _entry.id 7RPI # _exptl.entry_id 7RPI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 292 1_555 A SG CYS 179 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 153 A CYS 322 1_555 A SG CYS 197 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 170 A CYS 339 1_555 A SG CYS 178 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 215 A CYS 384 1_555 A SG CYS 248 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 228 A CYS 397 1_555 A SG CYS 241 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 660 A CYS 829 1_555 A SG CYS 680 A CYS 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 A SG CYS 694 A CYS 863 1_555 A SG CYS 703 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 A SG CYS 702 A CYS 871 1_555 A SG CYS 718 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 193 A ASN 362 1_555 HA C1 NAG . A NAG 2133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 221 A ASN 390 1_555 GA C1 NAG . A NAG 2132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 306 A ASN 475 1_555 FA C1 NAG . A NAG 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 A ND2 ASN 665 A ASN 834 1_555 EA C1 NAG . A NAG 2130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 A ND2 ASN 746 A ASN 915 1_555 DA C1 NAG . A NAG 2129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? metalc ? metalc1 A OD1 ASP 403 A ASP 572 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A OD2 ASP 403 A ASP 572 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A O MET 438 A MET 607 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A O THR 441 A THR 610 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc5 A OG1 THR 441 A THR 610 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc6 A OG SER 442 A SER 611 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 A OG1 THR 444 A THR 613 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 A OG1 THR 445 A THR 614 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A O GLY 876 A GLY 1045 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc10 A OD1 ASP 880 A ASP 1049 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 A OD2 ASP 880 A ASP 1049 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc12 JA NA NA . A NA 2135 1_555 KA O HOH . A HOH 2231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 397 n n C1 O1 NAG sing 398 n n C1 O5 NAG sing 399 n n C1 H1 NAG sing 400 n n C2 C3 NAG sing 401 n n C2 N2 NAG sing 402 n n C2 H2 NAG sing 403 n n C3 C4 NAG sing 404 n n C3 O3 NAG sing 405 n n C3 H3 NAG sing 406 n n C4 C5 NAG sing 407 n n C4 O4 NAG sing 408 n n C4 H4 NAG sing 409 n n C5 C6 NAG sing 410 n n C5 O5 NAG sing 411 n n C5 H5 NAG sing 412 n n C6 O6 NAG sing 413 n n C6 H61 NAG sing 414 n n C6 H62 NAG sing 415 n n C7 C8 NAG sing 416 n n C7 N2 NAG sing 417 n n C7 O7 NAG doub 418 n n C8 H81 NAG sing 419 n n C8 H82 NAG sing 420 n n C8 H83 NAG sing 421 n n N2 HN2 NAG sing 422 n n O1 HO1 NAG sing 423 n n O3 HO3 NAG sing 424 n n O4 HO4 NAG sing 425 n n O6 HO6 NAG sing 426 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7RPI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y01 A 1 2101 2101 Y01 Y01 . C 2 Y01 A 1 2102 2601 Y01 Y01 . D 2 Y01 A 1 2103 2201 Y01 Y01 . E 2 Y01 A 1 2104 1201 Y01 Y01 . F 2 Y01 A 1 2105 1601 Y01 Y01 . G 2 Y01 A 1 2106 2701 Y01 Y01 . H 2 Y01 A 1 2107 2301 Y01 Y01 . I 2 Y01 A 1 2108 1401 Y01 Y01 . J 2 Y01 A 1 2109 2501 Y01 Y01 . K 2 Y01 A 1 2110 2001 Y01 Y01 . L 2 Y01 A 1 2111 1701 Y01 Y01 . M 2 Y01 A 1 2112 1901 Y01 Y01 . N 2 Y01 A 1 2113 1301 Y01 Y01 . O 2 Y01 A 1 2114 1801 Y01 Y01 . P 2 Y01 A 1 2115 2401 Y01 Y01 . Q 2 Y01 A 1 2116 1501 Y01 Y01 . R 2 Y01 A 1 2117 2801 Y01 Y01 . S 2 Y01 A 1 2118 2901 Y01 Y01 . T 2 Y01 A 1 2119 3001 Y01 Y01 . U 2 Y01 A 1 2120 3002 Y01 Y01 . V 2 Y01 A 1 2121 3003 Y01 Y01 . W 2 Y01 A 1 2122 3004 Y01 Y01 . X 2 Y01 A 1 2123 3005 Y01 Y01 . Y 2 Y01 A 1 2124 3006 Y01 Y01 . Z 2 Y01 A 1 2125 3007 Y01 Y01 . AA 2 Y01 A 1 2126 3008 Y01 Y01 . BA 3 AV0 A 1 2127 1301 AV0 AV0 . CA 3 AV0 A 1 2128 1201 AV0 AV0 . DA 4 NAG A 1 2129 1201 NAG NAG . EA 4 NAG A 1 2130 1203 NAG NAG . FA 4 NAG A 1 2131 1202 NAG NAG . GA 4 NAG A 1 2132 1205 NAG NAG . HA 4 NAG A 1 2133 1204 NAG NAG . IA 5 NA A 1 2134 1 NA NA . JA 5 NA A 1 2135 3 NA NA . KA 6 HOH A 1 2201 37 HOH HOH . KA 6 HOH A 2 2202 10 HOH HOH . KA 6 HOH A 3 2203 2 HOH HOH . KA 6 HOH A 4 2204 34 HOH HOH . KA 6 HOH A 5 2205 13 HOH HOH . KA 6 HOH A 6 2206 29 HOH HOH . KA 6 HOH A 7 2207 11 HOH HOH . KA 6 HOH A 8 2208 38 HOH HOH . KA 6 HOH A 9 2209 14 HOH HOH . KA 6 HOH A 10 2210 16 HOH HOH . KA 6 HOH A 11 2211 9 HOH HOH . KA 6 HOH A 12 2212 33 HOH HOH . KA 6 HOH A 13 2213 7 HOH HOH . KA 6 HOH A 14 2214 8 HOH HOH . KA 6 HOH A 15 2215 43 HOH HOH . KA 6 HOH A 16 2216 28 HOH HOH . KA 6 HOH A 17 2217 30 HOH HOH . KA 6 HOH A 18 2218 12 HOH HOH . KA 6 HOH A 19 2219 26 HOH HOH . KA 6 HOH A 20 2220 31 HOH HOH . KA 6 HOH A 21 2221 21 HOH HOH . KA 6 HOH A 22 2222 4 HOH HOH . KA 6 HOH A 23 2223 15 HOH HOH . KA 6 HOH A 24 2224 24 HOH HOH . KA 6 HOH A 25 2225 41 HOH HOH . KA 6 HOH A 26 2226 18 HOH HOH . KA 6 HOH A 27 2227 44 HOH HOH . KA 6 HOH A 28 2228 5 HOH HOH . KA 6 HOH A 29 2229 36 HOH HOH . KA 6 HOH A 30 2230 32 HOH HOH . KA 6 HOH A 31 2231 6 HOH HOH . KA 6 HOH A 32 2232 39 HOH HOH . KA 6 HOH A 33 2233 20 HOH HOH . KA 6 HOH A 34 2234 27 HOH HOH . KA 6 HOH A 35 2235 42 HOH HOH . KA 6 HOH A 36 2236 17 HOH HOH . KA 6 HOH A 37 2237 40 HOH HOH . KA 6 HOH A 38 2238 19 HOH HOH . KA 6 HOH A 39 2239 23 HOH HOH . KA 6 HOH A 40 2240 35 HOH HOH . KA 6 HOH A 41 2241 45 HOH HOH . KA 6 HOH A 42 2242 22 HOH HOH . KA 6 HOH A 43 2243 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . GA 4 117.15 127.645 80.048 1 132.5 ? C1 NAG 2132 A 1 HETATM 2 C C2 NAG . . . GA 4 118.27 126.771 79.412 1 132.5 ? C2 NAG 2132 A 1 HETATM 3 C C3 NAG . . . GA 4 117.66 125.513 78.76 1 132.5 ? C3 NAG 2132 A 1 HETATM 4 C C4 NAG . . . GA 4 116.736 124.765 79.733 1 132.5 ? C4 NAG 2132 A 1 HETATM 5 C C5 NAG . . . GA 4 115.624 125.685 80.264 1 132.5 ? C5 NAG 2132 A 1 HETATM 6 C C6 NAG . . . GA 4 114.671 125.014 81.267 1 132.5 ? C6 NAG 2132 A 1 HETATM 7 C C7 NAG . . . GA 4 120.226 127.328 78.003 1 132.5 ? C7 NAG 2132 A 1 HETATM 8 C C8 NAG . . . GA 4 120.823 128.319 76.99 1 132.5 ? C8 NAG 2132 A 1 HETATM 9 N N2 NAG . . . GA 4 118.983 127.567 78.406 1 132.5 ? N2 NAG 2132 A 1 HETATM 10 O O3 NAG . . . GA 4 118.701 124.589 78.328 1 132.5 ? O3 NAG 2132 A 1 HETATM 11 O O4 NAG . . . GA 4 116.149 123.669 78.997 1 132.5 ? O4 NAG 2132 A 1 HETATM 12 O O5 NAG . . . GA 4 116.251 126.867 80.907 1 132.5 ? O5 NAG 2132 A 1 HETATM 13 O O6 NAG . . . GA 4 115.383 124.61 82.455 1 132.5 ? O6 NAG 2132 A 1 HETATM 14 O O7 NAG . . . GA 4 120.845 126.343 78.403 1 132.5 ? O7 NAG 2132 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 788 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #