data_7RPI
#
_model_server_result.job_id            BEDKn0G4PHL2YD4TZcIgKQ 
_model_server_result.datetime_utc      '2024-11-14 23:36:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rpi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":2134}' 
#
_entry.id    7RPI 
#
_exptl.entry_id    7RPI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 IA N N 
? 5 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 A CYS 292 1_555 A SG CYS 179 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 153 A CYS 322 1_555 A SG CYS 197 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 A SG CYS 170 A CYS 339 1_555 A SG CYS 178 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 215 A CYS 384 1_555 A SG CYS 248 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 228 A CYS 397 1_555 A SG CYS 241 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 660 A CYS 829 1_555 A SG CYS 680 A CYS 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf7 A SG CYS 694 A CYS 863 1_555 A SG CYS 703 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 A SG CYS 702 A CYS 871 1_555 A SG CYS 718 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 193 A ASN 362 1_555 HA C1 NAG . A NAG 2133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 A ND2 ASN 221 A ASN 390 1_555 GA C1 NAG . A NAG 2132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale3 A ND2 ASN 306 A ASN 475 1_555 FA C1 NAG . A NAG 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale4 A ND2 ASN 665 A ASN 834 1_555 EA C1 NAG . A NAG 2130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale5 A ND2 ASN 746 A ASN 915 1_555 DA C1 NAG . A NAG 2129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
metalc ? metalc1 A OD1 ASP 403 A ASP 572 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc2 A OD2 ASP 403 A ASP 572 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc3 A O MET 438 A MET 607 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc4 A O THR 441 A THR 610 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc5 A OG1 THR 441 A THR 610 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc6 A OG SER 442 A SER 611 1_555 JA NA NA . A NA 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc7 A OG1 THR 444 A THR 613 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc8 A OG1 THR 445 A THR 614 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc9 A O GLY 876 A GLY 1045 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc10 A OD1 ASP 880 A ASP 1049 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc11 A OD2 ASP 880 A ASP 1049 1_555 IA NA NA . A NA 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc12 JA NA NA . A NA 2135 1_555 KA O HOH . A HOH 2231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7RPI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Y01 A 1 2101 2101 Y01 Y01 . 
C 2 Y01 A 1 2102 2601 Y01 Y01 . 
D 2 Y01 A 1 2103 2201 Y01 Y01 . 
E 2 Y01 A 1 2104 1201 Y01 Y01 . 
F 2 Y01 A 1 2105 1601 Y01 Y01 . 
G 2 Y01 A 1 2106 2701 Y01 Y01 . 
H 2 Y01 A 1 2107 2301 Y01 Y01 . 
I 2 Y01 A 1 2108 1401 Y01 Y01 . 
J 2 Y01 A 1 2109 2501 Y01 Y01 . 
K 2 Y01 A 1 2110 2001 Y01 Y01 . 
L 2 Y01 A 1 2111 1701 Y01 Y01 . 
M 2 Y01 A 1 2112 1901 Y01 Y01 . 
N 2 Y01 A 1 2113 1301 Y01 Y01 . 
O 2 Y01 A 1 2114 1801 Y01 Y01 . 
P 2 Y01 A 1 2115 2401 Y01 Y01 . 
Q 2 Y01 A 1 2116 1501 Y01 Y01 . 
R 2 Y01 A 1 2117 2801 Y01 Y01 . 
S 2 Y01 A 1 2118 2901 Y01 Y01 . 
T 2 Y01 A 1 2119 3001 Y01 Y01 . 
U 2 Y01 A 1 2120 3002 Y01 Y01 . 
V 2 Y01 A 1 2121 3003 Y01 Y01 . 
W 2 Y01 A 1 2122 3004 Y01 Y01 . 
X 2 Y01 A 1 2123 3005 Y01 Y01 . 
Y 2 Y01 A 1 2124 3006 Y01 Y01 . 
Z 2 Y01 A 1 2125 3007 Y01 Y01 . 
AA 2 Y01 A 1 2126 3008 Y01 Y01 . 
BA 3 AV0 A 1 2127 1301 AV0 AV0 . 
CA 3 AV0 A 1 2128 1201 AV0 AV0 . 
DA 4 NAG A 1 2129 1201 NAG NAG . 
EA 4 NAG A 1 2130 1203 NAG NAG . 
FA 4 NAG A 1 2131 1202 NAG NAG . 
GA 4 NAG A 1 2132 1205 NAG NAG . 
HA 4 NAG A 1 2133 1204 NAG NAG . 
IA 5 NA A 1 2134 1 NA NA . 
JA 5 NA A 1 2135 3 NA NA . 
KA 6 HOH A 1 2201 37 HOH HOH . 
KA 6 HOH A 2 2202 10 HOH HOH . 
KA 6 HOH A 3 2203 2 HOH HOH . 
KA 6 HOH A 4 2204 34 HOH HOH . 
KA 6 HOH A 5 2205 13 HOH HOH . 
KA 6 HOH A 6 2206 29 HOH HOH . 
KA 6 HOH A 7 2207 11 HOH HOH . 
KA 6 HOH A 8 2208 38 HOH HOH . 
KA 6 HOH A 9 2209 14 HOH HOH . 
KA 6 HOH A 10 2210 16 HOH HOH . 
KA 6 HOH A 11 2211 9 HOH HOH . 
KA 6 HOH A 12 2212 33 HOH HOH . 
KA 6 HOH A 13 2213 7 HOH HOH . 
KA 6 HOH A 14 2214 8 HOH HOH . 
KA 6 HOH A 15 2215 43 HOH HOH . 
KA 6 HOH A 16 2216 28 HOH HOH . 
KA 6 HOH A 17 2217 30 HOH HOH . 
KA 6 HOH A 18 2218 12 HOH HOH . 
KA 6 HOH A 19 2219 26 HOH HOH . 
KA 6 HOH A 20 2220 31 HOH HOH . 
KA 6 HOH A 21 2221 21 HOH HOH . 
KA 6 HOH A 22 2222 4 HOH HOH . 
KA 6 HOH A 23 2223 15 HOH HOH . 
KA 6 HOH A 24 2224 24 HOH HOH . 
KA 6 HOH A 25 2225 41 HOH HOH . 
KA 6 HOH A 26 2226 18 HOH HOH . 
KA 6 HOH A 27 2227 44 HOH HOH . 
KA 6 HOH A 28 2228 5 HOH HOH . 
KA 6 HOH A 29 2229 36 HOH HOH . 
KA 6 HOH A 30 2230 32 HOH HOH . 
KA 6 HOH A 31 2231 6 HOH HOH . 
KA 6 HOH A 32 2232 39 HOH HOH . 
KA 6 HOH A 33 2233 20 HOH HOH . 
KA 6 HOH A 34 2234 27 HOH HOH . 
KA 6 HOH A 35 2235 42 HOH HOH . 
KA 6 HOH A 36 2236 17 HOH HOH . 
KA 6 HOH A 37 2237 40 HOH HOH . 
KA 6 HOH A 38 2238 19 HOH HOH . 
KA 6 HOH A 39 2239 23 HOH HOH . 
KA 6 HOH A 40 2240 35 HOH HOH . 
KA 6 HOH A 41 2241 45 HOH HOH . 
KA 6 HOH A 42 2242 22 HOH HOH . 
KA 6 HOH A 43 2243 25 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         IA 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               133.536 
_atom_site.Cartn_y               127.82 
_atom_site.Cartn_z               144.665 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        72.16 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           2134 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           1 
#