data_7RPJ # _model_server_result.job_id Vjne0HQ5wtVMHHnZs5w61g _model_server_result.datetime_utc '2024-11-22 00:15:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1614}' # _entry.id 7RPJ # _exptl.entry_id 7RPJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 292 1_555 A SG CYS 179 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 153 A CYS 322 1_555 A SG CYS 197 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 170 A CYS 339 1_555 A SG CYS 178 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 215 A CYS 384 1_555 A SG CYS 248 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 228 A CYS 397 1_555 A SG CYS 241 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 660 A CYS 829 1_555 A SG CYS 680 A CYS 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf7 A SG CYS 694 A CYS 863 1_555 A SG CYS 703 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 702 A CYS 871 1_555 A SG CYS 718 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 958 A CYS 1127 1_555 A SG CYS 962 A CYS 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? covale ? covale1 A ND2 ASN 193 A ASN 362 1_555 F C1 NAG . A NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 306 A ASN 475 1_555 B C1 NAG . A NAG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 665 A ASN 834 1_555 C C1 NAG . A NAG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 746 A ASN 915 1_555 D C1 NAG . A NAG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 404 n n CBA CAB Y01 sing 405 n n CBA CAN Y01 sing 406 n n CAN CAJ Y01 sing 407 n n CAJ CAO Y01 sing 408 n n CAO CBB Y01 sing 409 n n CBB CAC Y01 sing 410 n n CBB CBE Y01 sing 411 n n CBE CAP Y01 sing 412 n n CBE CBI Y01 sing 413 n n CAP CAQ Y01 sing 414 n n CAQ CBG Y01 sing 415 n n CBG CBI Y01 sing 416 n n CBG CBD Y01 sing 417 n n CBI CAE Y01 sing 418 n n CBI CAU Y01 sing 419 n n CAU CAS Y01 sing 420 n n CAS CBF Y01 sing 421 n n CBF CBD Y01 sing 422 n n CBF CBH Y01 sing 423 n n CBD CAK Y01 sing 424 n n CAK CAI Y01 sing 425 n n CAI CAZ Y01 doub 426 n n CAZ CAV Y01 sing 427 n n CAZ CBH Y01 sing 428 n n CAV CBC Y01 sing 429 n n CBH CAD Y01 sing 430 n n CBH CAT Y01 sing 431 n n CAT CAR Y01 sing 432 n n CAR CBC Y01 sing 433 n n CBC OAW Y01 sing 434 n n OAW CAY Y01 sing 435 n n CAY OAG Y01 doub 436 n n CAY CAM Y01 sing 437 n n CAM CAL Y01 sing 438 n n CAL CAX Y01 sing 439 n n CAX OAH Y01 sing 440 n n CAX OAF Y01 doub 441 n n CAA HAA1 Y01 sing 442 n n CAA HAA2 Y01 sing 443 n n CAA HAA3 Y01 sing 444 n n CBA HBA Y01 sing 445 n n CAB HAB1 Y01 sing 446 n n CAB HAB2 Y01 sing 447 n n CAB HAB3 Y01 sing 448 n n CAN HAN1 Y01 sing 449 n n CAN HAN2 Y01 sing 450 n n CAJ HAJ1 Y01 sing 451 n n CAJ HAJ2 Y01 sing 452 n n CAO HAO1 Y01 sing 453 n n CAO HAO2 Y01 sing 454 n n CBB HBB Y01 sing 455 n n CAC HAC1 Y01 sing 456 n n CAC HAC2 Y01 sing 457 n n CAC HAC3 Y01 sing 458 n n CBE HBE Y01 sing 459 n n CAP HAP1 Y01 sing 460 n n CAP HAP2 Y01 sing 461 n n CAQ HAQ1 Y01 sing 462 n n CAQ HAQ2 Y01 sing 463 n n CBG HBG Y01 sing 464 n n CBD HBD Y01 sing 465 n n CAE HAE1 Y01 sing 466 n n CAE HAE2 Y01 sing 467 n n CAE HAE3 Y01 sing 468 n n CAU HAU1 Y01 sing 469 n n CAU HAU2 Y01 sing 470 n n CAS HAS1 Y01 sing 471 n n CAS HAS2 Y01 sing 472 n n CBF HBF Y01 sing 473 n n CAK HAK1 Y01 sing 474 n n CAK HAK2 Y01 sing 475 n n CAI HAI Y01 sing 476 n n CAV HAV1 Y01 sing 477 n n CAV HAV2 Y01 sing 478 n n CBC HBC Y01 sing 479 n n CAD HAD1 Y01 sing 480 n n CAD HAD2 Y01 sing 481 n n CAD HAD3 Y01 sing 482 n n CAT HAT1 Y01 sing 483 n n CAT HAT2 Y01 sing 484 n n CAR HAR1 Y01 sing 485 n n CAR HAR2 Y01 sing 486 n n CAM HAM1 Y01 sing 487 n n CAM HAM2 Y01 sing 488 n n CAL HAL1 Y01 sing 489 n n CAL HAL2 Y01 sing 490 n n OAH HAH Y01 sing 491 n n # _atom_sites.entry_id 7RPJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1601 1202 NAG NAG . C 2 NAG A 1 1602 1203 NAG NAG . D 2 NAG A 1 1603 1201 NAG NAG . E 2 NAG A 1 1604 1205 NAG NAG . F 2 NAG A 1 1605 1204 NAG NAG . G 3 Y01 A 1 1606 2101 Y01 Y01 . H 3 Y01 A 1 1607 2601 Y01 Y01 . I 3 Y01 A 1 1608 1201 Y01 Y01 . J 3 Y01 A 1 1609 1601 Y01 Y01 . K 3 Y01 A 1 1610 2701 Y01 Y01 . L 3 Y01 A 1 1611 2301 Y01 Y01 . M 3 Y01 A 1 1612 1401 Y01 Y01 . N 3 Y01 A 1 1613 2501 Y01 Y01 . O 3 Y01 A 1 1614 2001 Y01 Y01 . P 3 Y01 A 1 1615 1701 Y01 Y01 . Q 3 Y01 A 1 1616 1901 Y01 Y01 . R 3 Y01 A 1 1617 1301 Y01 Y01 . S 3 Y01 A 1 1618 1801 Y01 Y01 . T 3 Y01 A 1 1619 1501 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . O 3 133.103 113.899 136.095 1 81.2 ? CAA Y01 1614 A 1 HETATM 2 C CBA Y01 . . . O 3 134.204 113.036 136.736 1 81.2 ? CBA Y01 1614 A 1 HETATM 3 C CAB Y01 . . . O 3 135.105 112.435 135.641 1 81.2 ? CAB Y01 1614 A 1 HETATM 4 C CAN Y01 . . . O 3 133.6 111.922 137.615 1 81.2 ? CAN Y01 1614 A 1 HETATM 5 C CAJ Y01 . . . O 3 133.174 112.433 139.004 1 81.2 ? CAJ Y01 1614 A 1 HETATM 6 C CAO Y01 . . . O 3 132.426 111.344 139.811 1 81.2 ? CAO Y01 1614 A 1 HETATM 7 C CBB Y01 . . . O 3 132.301 111.64 141.335 1 81.2 ? CBB Y01 1614 A 1 HETATM 8 C CAC Y01 . . . O 3 131.854 113.103 141.581 1 81.2 ? CAC Y01 1614 A 1 HETATM 9 C CBE Y01 . . . O 3 131.342 110.594 142.012 1 81.2 ? CBE Y01 1614 A 1 HETATM 10 C CAP Y01 . . . O 3 131.844 109.134 141.805 1 81.2 ? CAP Y01 1614 A 1 HETATM 11 C CAQ Y01 . . . O 3 131.476 108.327 143.07 1 81.2 ? CAQ Y01 1614 A 1 HETATM 12 C CBG Y01 . . . O 3 130.611 109.279 143.903 1 81.2 ? CBG Y01 1614 A 1 HETATM 13 C CBI Y01 . . . O 3 131.098 110.702 143.556 1 81.2 ? CBI Y01 1614 A 1 HETATM 14 C CAE Y01 . . . O 3 132.442 111.044 144.294 1 81.2 ? CAE Y01 1614 A 1 HETATM 15 C CAU Y01 . . . O 3 129.932 111.636 143.992 1 81.2 ? CAU Y01 1614 A 1 HETATM 16 C CAS Y01 . . . O 3 129.614 111.52 145.506 1 81.2 ? CAS Y01 1614 A 1 HETATM 17 C CBF Y01 . . . O 3 129.562 110.054 146.089 1 81.2 ? CBF Y01 1614 A 1 HETATM 18 C CBD Y01 . . . O 3 130.552 109.043 145.43 1 81.2 ? CBD Y01 1614 A 1 HETATM 19 C CAK Y01 . . . O 3 130.145 107.602 145.8 1 81.2 ? CAK Y01 1614 A 1 HETATM 20 C CAI Y01 . . . O 3 129.81 107.473 147.272 1 81.2 ? CAI Y01 1614 A 1 HETATM 21 C CAZ Y01 . . . O 3 129.629 108.504 148.111 1 81.2 ? CAZ Y01 1614 A 1 HETATM 22 C CAV Y01 . . . O 3 129.422 108.277 149.604 1 81.2 ? CAV Y01 1614 A 1 HETATM 23 C CBH Y01 . . . O 3 129.664 109.974 147.663 1 81.2 ? CBH Y01 1614 A 1 HETATM 24 C CAD Y01 . . . O 3 131.002 110.572 148.208 1 81.2 ? CAD Y01 1614 A 1 HETATM 25 C CAT Y01 . . . O 3 128.444 110.745 148.251 1 81.2 ? CAT Y01 1614 A 1 HETATM 26 C CAR Y01 . . . O 3 128.216 110.511 149.759 1 81.2 ? CAR Y01 1614 A 1 HETATM 27 C CBC Y01 . . . O 3 128.17 109.008 150.11 1 81.2 ? CBC Y01 1614 A 1 HETATM 28 O OAW Y01 . . . O 3 128.144 108.911 151.55 1 81.2 ? OAW Y01 1614 A 1 HETATM 29 C CAY Y01 . . . O 3 127.005 109.187 152.256 1 81.2 ? CAY Y01 1614 A 1 HETATM 30 O OAG Y01 . . . O 3 127.065 109.664 153.375 1 81.2 ? OAG Y01 1614 A 1 HETATM 31 C CAM Y01 . . . O 3 125.779 108.409 151.748 1 81.2 ? CAM Y01 1614 A 1 HETATM 32 C CAL Y01 . . . O 3 124.58 108.389 152.737 1 81.2 ? CAL Y01 1614 A 1 HETATM 33 C CAX Y01 . . . O 3 123.952 109.764 152.946 1 81.2 ? CAX Y01 1614 A 1 HETATM 34 O OAH Y01 . . . O 3 123.858 110.51 151.992 1 81.2 ? OAH Y01 1614 A 1 HETATM 35 O OAF Y01 . . . O 3 123.598 110.064 154.07 1 81.2 ? OAF Y01 1614 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #