data_7RQW # _model_server_result.job_id bQM0LvOaQTO-vdhZvwtGGA _model_server_result.datetime_utc '2024-11-14 10:56:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 7RQW # _exptl.entry_id 7RQW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 628.708 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description resiniferatoxin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RQW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 R N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C37 H40 O9' _chem_comp.formula_weight 628.708 _chem_comp.id 6EU _chem_comp.mon_nstd_flag . _chem_comp.name resiniferatoxin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RTX # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAI CBS 6EU sing 1 n n CBR CBS 6EU doub 2 n y CBR CBP 6EU sing 3 n y CBS CBQ 6EU sing 4 n y CBP CBN 6EU doub 5 n y CBT OAH 6EU sing 6 n n CBQ OAH 6EU sing 7 n n CBQ CBO 6EU doub 8 n y CBN CBO 6EU sing 9 n y CBN CBM 6EU sing 10 n n CBM CBK 6EU sing 11 n n CBD CAV 6EU sing 12 n n OAF CBK 6EU sing 13 n n OAF CBC 6EU sing 14 n n CBK OAG 6EU doub 15 n n CBB CAV 6EU doub 16 n n CAV CAM 6EU sing 17 n n CBC CAX 6EU sing 18 n n CAL OAB 6EU sing 19 n n CAL CAM 6EU sing 20 n n CAL CAK 6EU sing 21 n n OAB CAQ 6EU sing 22 n n CAS CAX 6EU doub 23 n n CAS CAK 6EU sing 24 n n CAM OAC 6EU sing 25 n n CAM CAP 6EU sing 26 n n CAX CAU 6EU sing 27 n n CAK CAJ 6EU sing 28 n n CBH CBJ 6EU doub 29 n y CBH CBE 6EU sing 30 n y OAC CAQ 6EU sing 31 n n CAQ CAY 6EU sing 32 n n CAQ OAA 6EU sing 33 n n CBJ CBL 6EU sing 34 n y CAP CAN 6EU sing 35 n n CAY CBE 6EU sing 36 n n CAU CAR 6EU sing 37 n n OAD CAR 6EU sing 38 n n CBE CBG 6EU doub 39 n y CAJ OAA 6EU sing 40 n n CAJ CAN 6EU sing 41 n n CAJ CAO 6EU sing 42 n n CAN CAT 6EU sing 43 n n CAR CAO 6EU sing 44 n n CAR CAZ 6EU sing 45 n n CBL CBI 6EU doub 46 n y CAO CAW 6EU sing 47 n n CBG CBI 6EU sing 48 n y CAZ OAE 6EU doub 49 n n CAZ CBA 6EU sing 50 n n CAW CBA 6EU doub 51 n n CBA CBF 6EU sing 52 n n CBT H1 6EU sing 53 n n CBT H2 6EU sing 54 n n CBT H3 6EU sing 55 n n CBO HBS 6EU sing 56 n n OAI HAI 6EU sing 57 n n CBR HBU 6EU sing 58 n n CBP HBT 6EU sing 59 n n CBM H4 6EU sing 60 n n CBM H5 6EU sing 61 n n CBC H6 6EU sing 62 n n CBC H7 6EU sing 63 n n CAS H8 6EU sing 64 n n CAK H9 6EU sing 65 n n CAU H10 6EU sing 66 n n CAU H11 6EU sing 67 n n OAD HAD 6EU sing 68 n n CBF H12 6EU sing 69 n n CBF H13 6EU sing 70 n n CBF H14 6EU sing 71 n n CAW H15 6EU sing 72 n n CAO H16 6EU sing 73 n n CAN H17 6EU sing 74 n n CAT H18 6EU sing 75 n n CAT H19 6EU sing 76 n n CAT H20 6EU sing 77 n n CAP H21 6EU sing 78 n n CAP H22 6EU sing 79 n n CBB H24 6EU sing 80 n n CBB H25 6EU sing 81 n n CBD H27 6EU sing 82 n n CBD H28 6EU sing 83 n n CBD H29 6EU sing 84 n n CAL H30 6EU sing 85 n n CAY H31 6EU sing 86 n n CAY H32 6EU sing 87 n n CBG HBL 6EU sing 88 n n CBI HBN 6EU sing 89 n n CBL HBP 6EU sing 90 n n CBJ HBO 6EU sing 91 n n CBH HBM 6EU sing 92 n n # _atom_sites.entry_id 7RQW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6EU A 1 901 901 6EU 6EU . F 3 PCW A 1 902 1001 PCW PCW . G 4 LBN A 1 903 1500 LBN PC . H 5 6OU A 1 904 1900 6OU PE . I 4 LBN A 1 905 1500 LBN PC . J 5 6OU A 1 906 1300 6OU PE . K 2 6EU B 1 901 901 6EU 6EU . L 3 PCW B 1 902 1001 PCW PCW . M 4 LBN B 1 903 1500 LBN PC . N 5 6OU B 1 904 1900 6OU PE . O 5 6OU B 1 905 1300 6OU PE . P 4 LBN B 1 906 1500 LBN PC . Q 5 6OU C 1 901 1300 6OU PE . R 2 6EU C 1 902 901 6EU 6EU . S 3 PCW C 1 903 1001 PCW PCW . T 5 6OU C 1 904 1900 6OU PE . U 5 6OU D 1 901 1300 6OU PE . V 2 6EU D 1 902 901 6EU 6EU . W 3 PCW D 1 903 1001 PCW PCW . X 5 6OU D 1 904 1900 6OU PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBT 6EU . . . E 2 122.24 114.819 128.865 1 30 ? CBT 6EU 901 A 1 HETATM 2 O OAH 6EU . . . E 2 122.772 115.287 130.097 1 30 ? OAH 6EU 901 A 1 HETATM 3 C CBQ 6EU . . . E 2 123.586 116.443 130.094 1 30 ? CBQ 6EU 901 A 1 HETATM 4 C CBO 6EU . . . E 2 123.972 117.102 128.931 1 30 ? CBO 6EU 901 A 1 HETATM 5 C CBS 6EU . . . E 2 124.025 116.943 131.313 1 30 ? CBS 6EU 901 A 1 HETATM 6 O OAI 6EU . . . E 2 123.639 116.292 132.486 1 30 ? OAI 6EU 901 A 1 HETATM 7 C CBR 6EU . . . E 2 124.833 118.075 131.398 1 30 ? CBR 6EU 901 A 1 HETATM 8 C CBP 6EU . . . E 2 125.216 118.731 130.227 1 30 ? CBP 6EU 901 A 1 HETATM 9 C CBN 6EU . . . E 2 124.777 118.234 129.004 1 30 ? CBN 6EU 901 A 1 HETATM 10 C CBM 6EU . . . E 2 125.175 118.931 127.692 1 30 ? CBM 6EU 901 A 1 HETATM 11 C CBK 6EU . . . E 2 124.319 120.183 127.397 1 30 ? CBK 6EU 901 A 1 HETATM 12 O OAG 6EU . . . E 2 124.213 121.023 128.226 1 30 ? OAG 6EU 901 A 1 HETATM 13 O OAF 6EU . . . E 2 123.688 120.316 126.141 1 30 ? OAF 6EU 901 A 1 HETATM 14 C CBC 6EU . . . E 2 124.182 121.405 125.382 1 30 ? CBC 6EU 901 A 1 HETATM 15 C CAX 6EU . . . E 2 123.183 121.611 124.233 1 30 ? CAX 6EU 901 A 1 HETATM 16 C CAS 6EU . . . E 2 121.828 122.373 124.62 1 30 ? CAS 6EU 901 A 1 HETATM 17 C CAK 6EU . . . E 2 120.336 121.697 124.324 1 30 ? CAK 6EU 901 A 1 HETATM 18 C CAU 6EU . . . E 2 123.106 120.413 123.279 1 30 ? CAU 6EU 901 A 1 HETATM 19 C CAR 6EU . . . E 2 121.905 120.301 122.399 1 30 ? CAR 6EU 901 A 1 HETATM 20 O OAD 6EU . . . E 2 121.009 119.395 122.989 1 30 ? OAD 6EU 901 A 1 HETATM 21 C CAZ 6EU . . . E 2 122.475 119.7 121.099 1 30 ? CAZ 6EU 901 A 1 HETATM 22 O OAE 6EU . . . E 2 123.231 118.788 121.066 1 30 ? OAE 6EU 901 A 1 HETATM 23 C CBA 6EU . . . E 2 121.933 120.478 119.948 1 30 ? CBA 6EU 901 A 1 HETATM 24 C CBF 6EU . . . E 2 122.125 120.167 118.444 1 30 ? CBF 6EU 901 A 1 HETATM 25 C CAW 6EU . . . E 2 120.816 121.335 120.53 1 30 ? CAW 6EU 901 A 1 HETATM 26 C CAO 6EU . . . E 2 121.212 121.567 121.991 1 30 ? CAO 6EU 901 A 1 HETATM 27 C CAJ 6EU . . . E 2 119.917 121.875 122.899 1 30 ? CAJ 6EU 901 A 1 HETATM 28 O OAA 6EU . . . E 2 119.569 123.417 122.877 1 30 ? OAA 6EU 901 A 1 HETATM 29 C CAN 6EU . . . E 2 118.682 121.092 122.532 1 30 ? CAN 6EU 901 A 1 HETATM 30 C CAT 6EU . . . E 2 117.833 121.831 121.506 1 30 ? CAT 6EU 901 A 1 HETATM 31 C CAP 6EU . . . E 2 117.709 120.853 123.804 1 30 ? CAP 6EU 901 A 1 HETATM 32 C CAM 6EU . . . E 2 117.87 122.09 124.902 1 30 ? CAM 6EU 901 A 1 HETATM 33 C CAV 6EU . . . E 2 116.993 121.87 126.061 1 30 ? CAV 6EU 901 A 1 HETATM 34 C CBB 6EU . . . E 2 116.087 120.912 126.287 1 30 ? CBB 6EU 901 A 1 HETATM 35 C CBD 6EU . . . E 2 117.427 123.09 126.93 1 30 ? CBD 6EU 901 A 1 HETATM 36 O OAC 6EU . . . E 2 117.55 123.237 124.228 1 30 ? OAC 6EU 901 A 1 HETATM 37 C CAL 6EU . . . E 2 119.455 122.314 125.282 1 30 ? CAL 6EU 901 A 1 HETATM 38 O OAB 6EU . . . E 2 119.588 123.571 125.161 1 30 ? OAB 6EU 901 A 1 HETATM 39 C CAQ 6EU . . . E 2 118.864 123.939 124.094 1 30 ? CAQ 6EU 901 A 1 HETATM 40 C CAY 6EU . . . E 2 118.668 125.456 124.023 1 30 ? CAY 6EU 901 A 1 HETATM 41 C CBE 6EU . . . E 2 120.018 126.1 123.628 1 30 ? CBE 6EU 901 A 1 HETATM 42 C CBG 6EU . . . E 2 120.836 126.625 124.621 1 30 ? CBG 6EU 901 A 1 HETATM 43 C CBI 6EU . . . E 2 122.056 127.201 124.29 1 30 ? CBI 6EU 901 A 1 HETATM 44 C CBL 6EU . . . E 2 122.464 127.251 122.958 1 30 ? CBL 6EU 901 A 1 HETATM 45 C CBJ 6EU . . . E 2 121.641 126.72 121.963 1 30 ? CBJ 6EU 901 A 1 HETATM 46 C CBH 6EU . . . E 2 120.417 126.145 122.297 1 30 ? CBH 6EU 901 A 1 HETATM 47 H H1 6EU . . . E 2 122.769 115.067 128.134 1 30 ? H1 6EU 901 A 1 HETATM 48 H H2 6EU . . . E 2 122.199 113.885 128.891 1 30 ? H2 6EU 901 A 1 HETATM 49 H H3 6EU . . . E 2 121.378 115.174 128.762 1 30 ? H3 6EU 901 A 1 HETATM 50 H HBS 6EU . . . E 2 123.689 116.782 128.099 1 30 ? HBS 6EU 901 A 1 HETATM 51 H HAI 6EU . . . E 2 124.002 115.55 132.516 1 30 ? HAI 6EU 901 A 1 HETATM 52 H HBU 6EU . . . E 2 125.113 118.386 132.233 1 30 ? HBU 6EU 901 A 1 HETATM 53 H HBT 6EU . . . E 2 125.757 119.488 130.271 1 30 ? HBT 6EU 901 A 1 HETATM 54 H H4 6EU . . . E 2 126.087 119.161 127.733 1 30 ? H4 6EU 901 A 1 HETATM 55 H H5 6EU . . . E 2 125.034 118.315 126.994 1 30 ? H5 6EU 901 A 1 HETATM 56 H H6 6EU . . . E 2 124.221 122.188 125.896 1 30 ? H6 6EU 901 A 1 HETATM 57 H H7 6EU . . . E 2 125.025 121.191 125.034 1 30 ? H7 6EU 901 A 1 HETATM 58 H H8 6EU . . . E 2 121.869 123.179 125.075 1 30 ? H8 6EU 901 A 1 HETATM 59 H H9 6EU . . . E 2 120.373 120.787 124.532 1 30 ? H9 6EU 901 A 1 HETATM 60 H H10 6EU . . . E 2 123.177 119.634 123.799 1 30 ? H10 6EU 901 A 1 HETATM 61 H H11 6EU . . . E 2 123.836 120.46 122.698 1 30 ? H11 6EU 901 A 1 HETATM 62 H HAD 6EU . . . E 2 121.328 118.633 122.972 1 30 ? HAD 6EU 901 A 1 HETATM 63 H H12 6EU . . . E 2 123.001 119.85 118.304 1 30 ? H12 6EU 901 A 1 HETATM 64 H H13 6EU . . . E 2 121.502 119.51 118.18 1 30 ? H13 6EU 901 A 1 HETATM 65 H H14 6EU . . . E 2 121.986 120.953 117.936 1 30 ? H14 6EU 901 A 1 HETATM 66 H H15 6EU . . . E 2 120.246 121.894 120.054 1 30 ? H15 6EU 901 A 1 HETATM 67 H H16 6EU . . . E 2 121.804 122.308 122.022 1 30 ? H16 6EU 901 A 1 HETATM 68 H H17 6EU . . . E 2 118.909 120.249 122.177 1 30 ? H17 6EU 901 A 1 HETATM 69 H H18 6EU . . . E 2 118.35 122.478 121.07 1 30 ? H18 6EU 901 A 1 HETATM 70 H H19 6EU . . . E 2 117.107 122.242 121.939 1 30 ? H19 6EU 901 A 1 HETATM 71 H H20 6EU . . . E 2 117.516 121.21 120.877 1 30 ? H20 6EU 901 A 1 HETATM 72 H H21 6EU . . . E 2 117.938 120.03 124.194 1 30 ? H21 6EU 901 A 1 HETATM 73 H H22 6EU . . . E 2 116.819 120.843 123.518 1 30 ? H22 6EU 901 A 1 HETATM 74 H H24 6EU . . . E 2 115.823 120.181 125.77 1 30 ? H24 6EU 901 A 1 HETATM 75 H H25 6EU . . . E 2 115.511 120.734 127.005 1 30 ? H25 6EU 901 A 1 HETATM 76 H H27 6EU . . . E 2 118.204 122.874 127.406 1 30 ? H27 6EU 901 A 1 HETATM 77 H H28 6EU . . . E 2 116.749 123.296 127.544 1 30 ? H28 6EU 901 A 1 HETATM 78 H H29 6EU . . . E 2 117.58 123.845 126.398 1 30 ? H29 6EU 901 A 1 HETATM 79 H H30 6EU . . . E 2 119.661 122.01 126.149 1 30 ? H30 6EU 901 A 1 HETATM 80 H H31 6EU . . . E 2 118.008 125.672 123.387 1 30 ? H31 6EU 901 A 1 HETATM 81 H H32 6EU . . . E 2 118.403 125.771 124.867 1 30 ? H32 6EU 901 A 1 HETATM 82 H HBL 6EU . . . E 2 120.566 126.594 125.508 1 30 ? HBL 6EU 901 A 1 HETATM 83 H HBN 6EU . . . E 2 122.6 127.551 124.959 1 30 ? HBN 6EU 901 A 1 HETATM 84 H HBP 6EU . . . E 2 123.279 127.633 122.736 1 30 ? HBP 6EU 901 A 1 HETATM 85 H HBO 6EU . . . E 2 121.911 126.752 121.075 1 30 ? HBO 6EU 901 A 1 HETATM 86 H HBM 6EU . . . E 2 119.873 125.793 121.633 1 30 ? HBM 6EU 901 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 86 #