data_7RQW # _model_server_result.job_id pnRLEtbIUvyAJtHUSnkamg _model_server_result.datetime_utc '2024-11-14 11:07:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":905}' # _entry.id 7RQW # _exptl.entry_id 7RQW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RQW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N ? 5 N N N ? 5 O N N ? 5 Q N N ? 5 T N N ? 5 U N N ? 5 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 93 n n C48 C49 6OU sing 94 n n C47 C46 6OU sing 95 n n C41 C40 6OU doub 96 z n C41 C42 6OU sing 97 n n C40 C39 6OU sing 98 n n C27 C28 6OU sing 99 n n C27 O26 6OU sing 100 n n C28 N29 6OU sing 101 n n C01 C02 6OU sing 102 n n C42 C43 6OU sing 103 n n C02 C03 6OU sing 104 n n C45 C46 6OU sing 105 n n C45 C44 6OU sing 106 n n C39 C38 6OU sing 107 n n C33 C34 6OU sing 108 n n C33 C31 6OU sing 109 n n C44 C43 6OU sing 110 n n O26 P23 6OU sing 111 n n O24 P23 6OU doub 112 n n C35 C34 6OU sing 113 n n C35 C36 6OU sing 114 n n C38 C37 6OU sing 115 n n C36 C37 6OU sing 116 n n C31 O30 6OU sing 117 n n C31 O32 6OU doub 118 n n O22 P23 6OU sing 119 n n O22 C21 6OU sing 120 n n O30 C20 6OU sing 121 n n P23 O25 6OU sing 122 n n C03 C04 6OU sing 123 n n C04 C05 6OU sing 124 n n C19 C20 6OU sing 125 n n C19 O18 6OU sing 126 n n C21 C20 6OU sing 127 n n C15 C14 6OU sing 128 n n C15 C16 6OU sing 129 n n O18 C16 6OU sing 130 n n C14 C13 6OU sing 131 n n C05 C06 6OU sing 132 n n C16 O17 6OU doub 133 n n C06 C07 6OU sing 134 n n C11 C10 6OU sing 135 n n C11 C12 6OU sing 136 n n C13 C12 6OU sing 137 n n C10 C09 6OU sing 138 n n C07 C08 6OU sing 139 n n C09 C08 6OU sing 140 n n C01 H1 6OU sing 141 n n C01 H2 6OU sing 142 n n C01 H3 6OU sing 143 n n C02 H4 6OU sing 144 n n C02 H5 6OU sing 145 n n C03 H6 6OU sing 146 n n C03 H7 6OU sing 147 n n C04 H8 6OU sing 148 n n C04 H9 6OU sing 149 n n C05 H10 6OU sing 150 n n C05 H11 6OU sing 151 n n C06 H12 6OU sing 152 n n C06 H13 6OU sing 153 n n C07 H14 6OU sing 154 n n C07 H15 6OU sing 155 n n C08 H16 6OU sing 156 n n C08 H17 6OU sing 157 n n C09 H18 6OU sing 158 n n C09 H19 6OU sing 159 n n C10 H20 6OU sing 160 n n C10 H21 6OU sing 161 n n C11 H22 6OU sing 162 n n C11 H23 6OU sing 163 n n C12 H24 6OU sing 164 n n C12 H25 6OU sing 165 n n C13 H26 6OU sing 166 n n C13 H27 6OU sing 167 n n C14 H28 6OU sing 168 n n C14 H29 6OU sing 169 n n C15 H30 6OU sing 170 n n C15 H31 6OU sing 171 n n C19 H32 6OU sing 172 n n C19 H33 6OU sing 173 n n C20 H34 6OU sing 174 n n C21 H35 6OU sing 175 n n C21 H36 6OU sing 176 n n O25 H37 6OU sing 177 n n C27 H38 6OU sing 178 n n C27 H39 6OU sing 179 n n C28 H40 6OU sing 180 n n C28 H41 6OU sing 181 n n N29 H42 6OU sing 182 n n N29 H43 6OU sing 183 n n C33 H45 6OU sing 184 n n C33 H46 6OU sing 185 n n C34 H47 6OU sing 186 n n C34 H48 6OU sing 187 n n C35 H49 6OU sing 188 n n C35 H50 6OU sing 189 n n C36 H51 6OU sing 190 n n C36 H52 6OU sing 191 n n C37 H53 6OU sing 192 n n C37 H54 6OU sing 193 n n C38 H55 6OU sing 194 n n C38 H56 6OU sing 195 n n C39 H57 6OU sing 196 n n C39 H58 6OU sing 197 n n C40 H59 6OU sing 198 n n C41 H60 6OU sing 199 n n C42 H61 6OU sing 200 n n C42 H62 6OU sing 201 n n C43 H63 6OU sing 202 n n C43 H64 6OU sing 203 n n C44 H65 6OU sing 204 n n C44 H66 6OU sing 205 n n C45 H67 6OU sing 206 n n C45 H68 6OU sing 207 n n C46 H69 6OU sing 208 n n C46 H70 6OU sing 209 n n C47 H71 6OU sing 210 n n C47 H72 6OU sing 211 n n C48 H73 6OU sing 212 n n C48 H74 6OU sing 213 n n C49 H75 6OU sing 214 n n C49 H76 6OU sing 215 n n C49 H77 6OU sing 216 n n # _atom_sites.entry_id 7RQW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6EU A 1 901 901 6EU 6EU . F 3 PCW A 1 902 1001 PCW PCW . G 4 LBN A 1 903 1500 LBN PC . H 5 6OU A 1 904 1900 6OU PE . I 4 LBN A 1 905 1500 LBN PC . J 5 6OU A 1 906 1300 6OU PE . K 2 6EU B 1 901 901 6EU 6EU . L 3 PCW B 1 902 1001 PCW PCW . M 4 LBN B 1 903 1500 LBN PC . N 5 6OU B 1 904 1900 6OU PE . O 5 6OU B 1 905 1300 6OU PE . P 4 LBN B 1 906 1500 LBN PC . Q 5 6OU C 1 901 1300 6OU PE . R 2 6EU C 1 902 901 6EU 6EU . S 3 PCW C 1 903 1001 PCW PCW . T 5 6OU C 1 904 1900 6OU PE . U 5 6OU D 1 901 1300 6OU PE . V 2 6EU D 1 902 901 6EU 6EU . W 3 PCW D 1 903 1001 PCW PCW . X 5 6OU D 1 904 1900 6OU PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C06 6OU . . . O 5 147.675 120.456 118.333 1 19.21 ? C06 6OU 905 B 1 HETATM 2 C C07 6OU . . . O 5 146.628 119.999 117.268 1 19.21 ? C07 6OU 905 B 1 HETATM 3 C C08 6OU . . . O 5 147.178 119.296 115.995 1 19.21 ? C08 6OU 905 B 1 HETATM 4 C C09 6OU . . . O 5 146.261 118.192 115.364 1 19.21 ? C09 6OU 905 B 1 HETATM 5 C C10 6OU . . . O 5 146.159 118.192 113.817 1 19.21 ? C10 6OU 905 B 1 HETATM 6 C C11 6OU . . . O 5 145.888 116.831 113.114 1 19.21 ? C11 6OU 905 B 1 HETATM 7 C C12 6OU . . . O 5 145.42 116.909 111.629 1 19.21 ? C12 6OU 905 B 1 HETATM 8 C C13 6OU . . . O 5 146.465 116.577 110.533 1 19.21 ? C13 6OU 905 B 1 HETATM 9 C C14 6OU . . . O 5 145.882 116.012 109.201 1 19.21 ? C14 6OU 905 B 1 HETATM 10 C C15 6OU . . . O 5 146.52 116.567 107.902 1 19.21 ? C15 6OU 905 B 1 HETATM 11 C C16 6OU . . . O 5 145.746 116.187 106.622 1 19.21 ? C16 6OU 905 B 1 HETATM 12 O O17 6OU . . . O 5 145.369 115.079 106.386 1 19.21 ? O17 6OU 905 B 1 HETATM 13 O O18 6OU . . . O 5 145.502 117.225 105.739 1 19.21 ? O18 6OU 905 B 1 HETATM 14 C C19 6OU . . . O 5 144.396 117.045 104.842 1 19.21 ? C19 6OU 905 B 1 HETATM 15 C C20 6OU . . . O 5 143.682 118.388 104.468 1 19.21 ? C20 6OU 905 B 1 HETATM 16 C C21 6OU . . . O 5 144.367 119.116 103.245 1 19.21 ? C21 6OU 905 B 1 HETATM 17 O O22 6OU . . . O 5 144.6 118.231 102.208 1 19.21 ? O22 6OU 905 B 1 HETATM 18 P P23 6OU . . . O 5 143.262 117.303 101.527 1 19.21 ? P23 6OU 905 B 1 HETATM 19 O O24 6OU . . . O 5 142.029 118.076 101.81 1 19.21 ? O24 6OU 905 B 1 HETATM 20 O O25 6OU . . . O 5 143.484 115.891 101.954 1 19.21 -1 O25 6OU 905 B 1 HETATM 21 O O26 6OU . . . O 5 143.496 117.342 99.813 1 19.21 ? O26 6OU 905 B 1 HETATM 22 O O30 6OU . . . O 5 143.714 119.263 105.63 1 19.21 ? O30 6OU 905 B 1 HETATM 23 C C31 6OU . . . O 5 142.925 118.95 106.732 1 19.21 ? C31 6OU 905 B 1 HETATM 24 O O32 6OU . . . O 5 142.536 117.846 106.926 1 19.21 ? O32 6OU 905 B 1 HETATM 25 C C33 6OU . . . O 5 142.58 120.117 107.687 1 19.21 ? C33 6OU 905 B 1 HETATM 26 C C34 6OU . . . O 5 142.836 119.795 109.197 1 19.21 ? C34 6OU 905 B 1 HETATM 27 C C35 6OU . . . O 5 142.189 118.487 109.768 1 19.21 ? C35 6OU 905 B 1 HETATM 28 C C36 6OU . . . O 5 142.013 118.425 111.334 1 19.21 ? C36 6OU 905 B 1 HETATM 29 C C37 6OU . . . O 5 141.6 119.739 112.06 1 19.21 ? C37 6OU 905 B 1 HETATM 30 C C38 6OU . . . O 5 140.94 119.59 113.46 1 19.21 ? C38 6OU 905 B 1 HETATM 31 C C39 6OU . . . O 5 141.675 120.294 114.609 1 19.21 ? C39 6OU 905 B 1 HETATM 32 C C40 6OU . . . O 5 141.02 120.196 115.959 1 19.21 ? C40 6OU 905 B 1 HETATM 33 H H12 6OU . . . O 5 148.446 119.868 118.299 1 19.21 ? H12 6OU 905 B 1 HETATM 34 H H13 6OU . . . O 5 148.035 121.317 118.071 1 19.21 ? H13 6OU 905 B 1 HETATM 35 H H14 6OU . . . O 5 145.997 119.402 117.699 1 19.21 ? H14 6OU 905 B 1 HETATM 36 H H15 6OU . . . O 5 146.097 120.759 116.985 1 19.21 ? H15 6OU 905 B 1 HETATM 37 H H16 6OU . . . O 5 147.359 119.972 115.325 1 19.21 ? H16 6OU 905 B 1 HETATM 38 H H17 6OU . . . O 5 148.05 118.921 116.191 1 19.21 ? H17 6OU 905 B 1 HETATM 39 H H18 6OU . . . O 5 145.368 118.251 115.738 1 19.21 ? H18 6OU 905 B 1 HETATM 40 H H19 6OU . . . O 5 146.578 117.321 115.648 1 19.21 ? H19 6OU 905 B 1 HETATM 41 H H20 6OU . . . O 5 146.981 118.561 113.455 1 19.21 ? H20 6OU 905 B 1 HETATM 42 H H21 6OU . . . O 5 145.476 118.824 113.548 1 19.21 ? H21 6OU 905 B 1 HETATM 43 H H22 6OU . . . O 5 145.245 116.329 113.639 1 19.21 ? H22 6OU 905 B 1 HETATM 44 H H23 6OU . . . O 5 146.677 116.269 113.167 1 19.21 ? H23 6OU 905 B 1 HETATM 45 H H24 6OU . . . O 5 144.649 116.33 111.511 1 19.21 ? H24 6OU 905 B 1 HETATM 46 H H25 6OU . . . O 5 145.077 117.801 111.468 1 19.21 ? H25 6OU 905 B 1 HETATM 47 H H26 6OU . . . O 5 147.101 115.942 110.9 1 19.21 ? H26 6OU 905 B 1 HETATM 48 H H27 6OU . . . O 5 147.003 117.365 110.358 1 19.21 ? H27 6OU 905 B 1 HETATM 49 H H28 6OU . . . O 5 145.975 115.045 109.207 1 19.21 ? H28 6OU 905 B 1 HETATM 50 H H29 6OU . . . O 5 144.923 116.154 109.173 1 19.21 ? H29 6OU 905 B 1 HETATM 51 H H30 6OU . . . O 5 146.679 117.521 107.974 1 19.21 ? H30 6OU 905 B 1 HETATM 52 H H31 6OU . . . O 5 147.396 116.167 107.794 1 19.21 ? H31 6OU 905 B 1 HETATM 53 H H32 6OU . . . O 5 144.635 116.583 104.024 1 19.21 ? H32 6OU 905 B 1 HETATM 54 H H33 6OU . . . O 5 143.735 116.486 105.278 1 19.21 ? H33 6OU 905 B 1 HETATM 55 H H34 6OU . . . O 5 142.775 118.172 104.201 1 19.21 ? H34 6OU 905 B 1 HETATM 56 H H35 6OU . . . O 5 145.207 119.506 103.529 1 19.21 ? H35 6OU 905 B 1 HETATM 57 H H36 6OU . . . O 5 143.799 119.846 102.953 1 19.21 ? H36 6OU 905 B 1 HETATM 58 H H45 6OU . . . O 5 141.684 120.46 107.545 1 19.21 ? H45 6OU 905 B 1 HETATM 59 H H46 6OU . . . O 5 143.174 120.839 107.424 1 19.21 ? H46 6OU 905 B 1 HETATM 60 H H47 6OU . . . O 5 142.505 120.544 109.711 1 19.21 ? H47 6OU 905 B 1 HETATM 61 H H48 6OU . . . O 5 143.791 119.768 109.365 1 19.21 ? H48 6OU 905 B 1 HETATM 62 H H49 6OU . . . O 5 141.317 118.362 109.361 1 19.21 ? H49 6OU 905 B 1 HETATM 63 H H50 6OU . . . O 5 142.701 117.717 109.476 1 19.21 ? H50 6OU 905 B 1 HETATM 64 H H51 6OU . . . O 5 142.831 118.102 111.741 1 19.21 ? H51 6OU 905 B 1 HETATM 65 H H52 6OU . . . O 5 141.35 117.75 111.545 1 19.21 ? H52 6OU 905 B 1 HETATM 66 H H53 6OU . . . O 5 142.364 120.334 112.136 1 19.21 ? H53 6OU 905 B 1 HETATM 67 H H54 6OU . . . O 5 140.986 120.236 111.497 1 19.21 ? H54 6OU 905 B 1 HETATM 68 H H55 6OU . . . O 5 140.023 119.908 113.429 1 19.21 ? H55 6OU 905 B 1 HETATM 69 H H56 6OU . . . O 5 140.883 118.639 113.652 1 19.21 ? H56 6OU 905 B 1 HETATM 70 H H57 6OU . . . O 5 142.599 119.998 114.628 1 19.21 ? H57 6OU 905 B 1 HETATM 71 H H58 6OU . . . O 5 141.757 121.225 114.351 1 19.21 ? H58 6OU 905 B 1 HETATM 72 H H401 6OU . . . O 5 140.114 120.406 115.98 1 19.21 ? H401 6OU 905 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 72 #