data_7RR4
#
_model_server_result.job_id            X38maDolj9_2y-A4Z1hVkg 
_model_server_result.datetime_utc      '2024-11-12 20:43:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rr4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7RR4 
#
_exptl.entry_id    7RR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              177.975 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PYROPHOSPHATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.602 
_cell.angle_gamma         90 
_cell.entry_id            7RR4 
_cell.length_a            119.34 
_cell.length_b            56.903 
_cell.length_c            48.564 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 69 A THR 69 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc2 A O ASP 72 A ASP 72 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc3 A OD1 ASP 72 A ASP 72 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc4 A O PHE 74 A PHE 74 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc5 A OD2 ASP 78 A ASP 78 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc6 A OD1 ASP 80 A ASP 80 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc7 A O GLU 142 A GLU 142 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc8 B MG MG . A MG 301 1_555 D O21 PPV . A PPV 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
#
_chem_comp.formula           'H4 O7 P2' 
_chem_comp.formula_weight    177.975 
_chem_comp.id                PPV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PYROPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 P1 PPV sing 260 n n 
O11 H11 PPV sing 261 n n 
P1 O21 PPV sing 262 n n 
P1 O31 PPV doub 263 n n 
P1 OPP PPV sing 264 n n 
O21 H21 PPV sing 265 n n 
OPP P2 PPV sing 266 n n 
P2 O12 PPV sing 267 n n 
P2 O22 PPV doub 268 n n 
P2 O32 PPV sing 269 n n 
O12 H12 PPV sing 270 n n 
O32 H32 PPV sing 271 n n 
#
_atom_sites.entry_id                     7RR4 
_atom_sites.fract_transf_matrix[1][1]    0.008379 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000527 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 2 MG MG . 
C 2 MG A 1 302 3 MG MG . 
D 3 PPV A 1 303 1 PPV PPV . 
E 4 HOH A 1 401 77 HOH HOH . 
E 4 HOH A 2 402 85 HOH HOH . 
E 4 HOH A 3 403 91 HOH HOH . 
E 4 HOH A 4 404 69 HOH HOH . 
E 4 HOH A 5 405 10 HOH HOH . 
E 4 HOH A 6 406 66 HOH HOH . 
E 4 HOH A 7 407 6 HOH HOH . 
E 4 HOH A 8 408 57 HOH HOH . 
E 4 HOH A 9 409 61 HOH HOH . 
E 4 HOH A 10 410 75 HOH HOH . 
E 4 HOH A 11 411 67 HOH HOH . 
E 4 HOH A 12 412 54 HOH HOH . 
E 4 HOH A 13 413 4 HOH HOH . 
E 4 HOH A 14 414 9 HOH HOH . 
E 4 HOH A 15 415 42 HOH HOH . 
E 4 HOH A 16 416 71 HOH HOH . 
E 4 HOH A 17 417 97 HOH HOH . 
E 4 HOH A 18 418 89 HOH HOH . 
E 4 HOH A 19 419 94 HOH HOH . 
E 4 HOH A 20 420 84 HOH HOH . 
E 4 HOH A 21 421 79 HOH HOH . 
E 4 HOH A 22 422 11 HOH HOH . 
E 4 HOH A 23 423 24 HOH HOH . 
E 4 HOH A 24 424 12 HOH HOH . 
E 4 HOH A 25 425 55 HOH HOH . 
E 4 HOH A 26 426 38 HOH HOH . 
E 4 HOH A 27 427 19 HOH HOH . 
E 4 HOH A 28 428 26 HOH HOH . 
E 4 HOH A 29 429 49 HOH HOH . 
E 4 HOH A 30 430 5 HOH HOH . 
E 4 HOH A 31 431 1 HOH HOH . 
E 4 HOH A 32 432 21 HOH HOH . 
E 4 HOH A 33 433 14 HOH HOH . 
E 4 HOH A 34 434 7 HOH HOH . 
E 4 HOH A 35 435 59 HOH HOH . 
E 4 HOH A 36 436 29 HOH HOH . 
E 4 HOH A 37 437 50 HOH HOH . 
E 4 HOH A 38 438 70 HOH HOH . 
E 4 HOH A 39 439 44 HOH HOH . 
E 4 HOH A 40 440 40 HOH HOH . 
E 4 HOH A 41 441 47 HOH HOH . 
E 4 HOH A 42 442 43 HOH HOH . 
E 4 HOH A 43 443 3 HOH HOH . 
E 4 HOH A 44 444 64 HOH HOH . 
E 4 HOH A 45 445 65 HOH HOH . 
E 4 HOH A 46 446 25 HOH HOH . 
E 4 HOH A 47 447 30 HOH HOH . 
E 4 HOH A 48 448 35 HOH HOH . 
E 4 HOH A 49 449 98 HOH HOH . 
E 4 HOH A 50 450 2 HOH HOH . 
E 4 HOH A 51 451 15 HOH HOH . 
E 4 HOH A 52 452 78 HOH HOH . 
E 4 HOH A 53 453 33 HOH HOH . 
E 4 HOH A 54 454 8 HOH HOH . 
E 4 HOH A 55 455 22 HOH HOH . 
E 4 HOH A 56 456 83 HOH HOH . 
E 4 HOH A 57 457 31 HOH HOH . 
E 4 HOH A 58 458 100 HOH HOH . 
E 4 HOH A 59 459 27 HOH HOH . 
E 4 HOH A 60 460 13 HOH HOH . 
E 4 HOH A 61 461 16 HOH HOH . 
E 4 HOH A 62 462 73 HOH HOH . 
E 4 HOH A 63 463 81 HOH HOH . 
E 4 HOH A 64 464 74 HOH HOH . 
E 4 HOH A 65 465 80 HOH HOH . 
E 4 HOH A 66 466 58 HOH HOH . 
E 4 HOH A 67 467 48 HOH HOH . 
E 4 HOH A 68 468 87 HOH HOH . 
E 4 HOH A 69 469 60 HOH HOH . 
E 4 HOH A 70 470 63 HOH HOH . 
E 4 HOH A 71 471 20 HOH HOH . 
E 4 HOH A 72 472 17 HOH HOH . 
E 4 HOH A 73 473 62 HOH HOH . 
E 4 HOH A 74 474 92 HOH HOH . 
E 4 HOH A 75 475 51 HOH HOH . 
E 4 HOH A 76 476 68 HOH HOH . 
E 4 HOH A 77 477 28 HOH HOH . 
E 4 HOH A 78 478 82 HOH HOH . 
E 4 HOH A 79 479 56 HOH HOH . 
E 4 HOH A 80 480 34 HOH HOH . 
E 4 HOH A 81 481 45 HOH HOH . 
E 4 HOH A 82 482 72 HOH HOH . 
E 4 HOH A 83 483 36 HOH HOH . 
E 4 HOH A 84 484 86 HOH HOH . 
E 4 HOH A 85 485 52 HOH HOH . 
E 4 HOH A 86 486 76 HOH HOH . 
E 4 HOH A 87 487 53 HOH HOH . 
E 4 HOH A 88 488 90 HOH HOH . 
E 4 HOH A 89 489 95 HOH HOH . 
E 4 HOH A 90 490 96 HOH HOH . 
E 4 HOH A 91 491 88 HOH HOH . 
E 4 HOH A 92 492 23 HOH HOH . 
E 4 HOH A 93 493 46 HOH HOH . 
E 4 HOH A 94 494 18 HOH HOH . 
E 4 HOH A 95 495 41 HOH HOH . 
E 4 HOH A 96 496 37 HOH HOH . 
E 4 HOH A 97 497 39 HOH HOH . 
E 4 HOH A 98 498 99 HOH HOH . 
E 4 HOH A 99 499 32 HOH HOH . 
E 4 HOH A 100 500 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O11 PPV . . . D 3 -11.174 15.852 1.25 1 62.5 ? O11 PPV 303 A 1 
HETATM 2 P P1 PPV . . . D 3 -10.632 17.02 0.466 1 106 ? P1 PPV 303 A 1 
HETATM 3 O O21 PPV . . . D 3 -11.156 18.342 0.964 1 74.35 ? O21 PPV 303 A 1 
HETATM 4 O O31 PPV . . . D 3 -10.7 16.819 -1.027 1 67.47 ? O31 PPV 303 A 1 
HETATM 5 O OPP PPV . . . D 3 -9.057 16.987 0.821 1 67.82 ? OPP PPV 303 A 1 
HETATM 6 P P2 PPV . . . D 3 -8.189 18.249 1.343 1 77.77 ? P2 PPV 303 A 1 
HETATM 7 O O12 PPV . . . D 3 -8.131 17.98 2.825 1 56.46 ? O12 PPV 303 A 1 
HETATM 8 O O22 PPV . . . D 3 -6.874 18.116 0.618 1 70.42 ? O22 PPV 303 A 1 
HETATM 9 O O32 PPV . . . D 3 -8.901 19.531 0.986 1 76.37 ? O32 PPV 303 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#