data_7RRM
#
_model_server_result.job_id            edNtTUqnC8pLC6Gs5-5f7Q 
_model_server_result.datetime_utc      '2025-02-16 22:48:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rrm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7RRM 
#
_exptl.entry_id    7RRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7RRM 
_cell.length_a            151.89 
_cell.length_b            151.89 
_cell.length_c            56.17 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G 1 1 
C,H 2 1 
C,H 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 151.89 0 56.17 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 C CYS 50 1_555 A SG CYS 111 C CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 50 A CYS 50 1_555 B SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf3 C SG CYS 50 B CYS 50 1_555 C SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 243 n n 
C1 H11 MPD sing 244 n n 
C1 H12 MPD sing 245 n n 
C1 H13 MPD sing 246 n n 
C2 O2 MPD sing 247 n n 
C2 CM MPD sing 248 n n 
C2 C3 MPD sing 249 n n 
O2 HO2 MPD sing 250 n n 
CM HM1 MPD sing 251 n n 
CM HM2 MPD sing 252 n n 
CM HM3 MPD sing 253 n n 
C3 C4 MPD sing 254 n n 
C3 H31 MPD sing 255 n n 
C3 H32 MPD sing 256 n n 
C4 O4 MPD sing 257 n n 
C4 C5 MPD sing 258 n n 
C4 H4 MPD sing 259 n n 
O4 HO4 MPD sing 260 n n 
C5 H51 MPD sing 261 n n 
C5 H52 MPD sing 262 n n 
C5 H53 MPD sing 263 n n 
#
_atom_sites.entry_id                     7RRM 
_atom_sites.fract_transf_matrix[1][1]    0.006584 
_atom_sites.fract_transf_matrix[1][2]    0.003801 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MPD C 1 201 201 MPD MPD . 
E 3 ACT A 1 201 201 ACT ACT . 
F 4 HOH C 1 301 81 HOH HOH . 
F 4 HOH C 2 302 22 HOH HOH . 
F 4 HOH C 3 303 121 HOH HOH . 
F 4 HOH C 4 304 131 HOH HOH . 
F 4 HOH C 5 305 59 HOH HOH . 
F 4 HOH C 6 306 89 HOH HOH . 
F 4 HOH C 7 307 94 HOH HOH . 
F 4 HOH C 8 308 93 HOH HOH . 
F 4 HOH C 9 309 56 HOH HOH . 
F 4 HOH C 10 310 79 HOH HOH . 
F 4 HOH C 11 311 9 HOH HOH . 
F 4 HOH C 12 312 90 HOH HOH . 
F 4 HOH C 13 313 33 HOH HOH . 
F 4 HOH C 14 314 21 HOH HOH . 
F 4 HOH C 15 315 122 HOH HOH . 
F 4 HOH C 16 316 115 HOH HOH . 
F 4 HOH C 17 317 4 HOH HOH . 
F 4 HOH C 18 318 132 HOH HOH . 
F 4 HOH C 19 319 51 HOH HOH . 
F 4 HOH C 20 320 46 HOH HOH . 
F 4 HOH C 21 321 37 HOH HOH . 
F 4 HOH C 22 322 123 HOH HOH . 
F 4 HOH C 23 323 133 HOH HOH . 
F 4 HOH C 24 324 128 HOH HOH . 
F 4 HOH C 25 325 25 HOH HOH . 
F 4 HOH C 26 326 134 HOH HOH . 
G 4 HOH A 1 301 45 HOH HOH . 
G 4 HOH A 2 302 83 HOH HOH . 
G 4 HOH A 3 303 63 HOH HOH . 
G 4 HOH A 4 304 117 HOH HOH . 
G 4 HOH A 5 305 92 HOH HOH . 
G 4 HOH A 6 306 24 HOH HOH . 
G 4 HOH A 7 307 127 HOH HOH . 
G 4 HOH A 8 308 16 HOH HOH . 
G 4 HOH A 9 309 126 HOH HOH . 
G 4 HOH A 10 310 120 HOH HOH . 
G 4 HOH A 11 311 50 HOH HOH . 
G 4 HOH A 12 312 35 HOH HOH . 
G 4 HOH A 13 313 106 HOH HOH . 
G 4 HOH A 14 314 72 HOH HOH . 
G 4 HOH A 15 315 129 HOH HOH . 
G 4 HOH A 16 316 29 HOH HOH . 
G 4 HOH A 17 317 7 HOH HOH . 
G 4 HOH A 18 318 130 HOH HOH . 
G 4 HOH A 19 319 31 HOH HOH . 
G 4 HOH A 20 320 57 HOH HOH . 
G 4 HOH A 21 321 1 HOH HOH . 
G 4 HOH A 22 322 64 HOH HOH . 
G 4 HOH A 23 323 19 HOH HOH . 
G 4 HOH A 24 324 114 HOH HOH . 
G 4 HOH A 25 325 55 HOH HOH . 
G 4 HOH A 26 326 54 HOH HOH . 
G 4 HOH A 27 327 105 HOH HOH . 
G 4 HOH A 28 328 125 HOH HOH . 
G 4 HOH A 29 329 2 HOH HOH . 
G 4 HOH A 30 330 42 HOH HOH . 
G 4 HOH A 31 331 108 HOH HOH . 
G 4 HOH A 32 332 32 HOH HOH . 
G 4 HOH A 33 333 84 HOH HOH . 
G 4 HOH A 34 334 86 HOH HOH . 
G 4 HOH A 35 335 98 HOH HOH . 
G 4 HOH A 36 336 71 HOH HOH . 
G 4 HOH A 37 337 135 HOH HOH . 
G 4 HOH A 38 338 110 HOH HOH . 
H 4 HOH B 1 201 77 HOH HOH . 
H 4 HOH B 2 202 80 HOH HOH . 
H 4 HOH B 3 203 66 HOH HOH . 
H 4 HOH B 4 204 76 HOH HOH . 
H 4 HOH B 5 205 116 HOH HOH . 
H 4 HOH B 6 206 61 HOH HOH . 
H 4 HOH B 7 207 78 HOH HOH . 
H 4 HOH B 8 208 23 HOH HOH . 
H 4 HOH B 9 209 30 HOH HOH . 
H 4 HOH B 10 210 74 HOH HOH . 
H 4 HOH B 11 211 28 HOH HOH . 
H 4 HOH B 12 212 26 HOH HOH . 
H 4 HOH B 13 213 69 HOH HOH . 
H 4 HOH B 14 214 52 HOH HOH . 
H 4 HOH B 15 215 18 HOH HOH . 
H 4 HOH B 16 216 95 HOH HOH . 
H 4 HOH B 17 217 58 HOH HOH . 
H 4 HOH B 18 218 107 HOH HOH . 
H 4 HOH B 19 219 60 HOH HOH . 
H 4 HOH B 20 220 8 HOH HOH . 
H 4 HOH B 21 221 39 HOH HOH . 
H 4 HOH B 22 222 11 HOH HOH . 
H 4 HOH B 23 223 36 HOH HOH . 
H 4 HOH B 24 224 104 HOH HOH . 
H 4 HOH B 25 225 112 HOH HOH . 
H 4 HOH B 26 226 119 HOH HOH . 
H 4 HOH B 27 227 6 HOH HOH . 
H 4 HOH B 28 228 10 HOH HOH . 
H 4 HOH B 29 229 15 HOH HOH . 
H 4 HOH B 30 230 68 HOH HOH . 
H 4 HOH B 31 231 13 HOH HOH . 
H 4 HOH B 32 232 99 HOH HOH . 
H 4 HOH B 33 233 65 HOH HOH . 
H 4 HOH B 34 234 87 HOH HOH . 
H 4 HOH B 35 235 53 HOH HOH . 
H 4 HOH B 36 236 44 HOH HOH . 
H 4 HOH B 37 237 118 HOH HOH . 
H 4 HOH B 38 238 97 HOH HOH . 
H 4 HOH B 39 239 41 HOH HOH . 
H 4 HOH B 40 240 12 HOH HOH . 
H 4 HOH B 41 241 47 HOH HOH . 
H 4 HOH B 42 242 40 HOH HOH . 
H 4 HOH B 43 243 38 HOH HOH . 
H 4 HOH B 44 244 124 HOH HOH . 
H 4 HOH B 45 245 3 HOH HOH . 
H 4 HOH B 46 246 73 HOH HOH . 
H 4 HOH B 47 247 85 HOH HOH . 
H 4 HOH B 48 248 70 HOH HOH . 
H 4 HOH B 49 249 20 HOH HOH . 
H 4 HOH B 50 250 88 HOH HOH . 
H 4 HOH B 51 251 34 HOH HOH . 
H 4 HOH B 52 252 109 HOH HOH . 
H 4 HOH B 53 253 14 HOH HOH . 
H 4 HOH B 54 254 113 HOH HOH . 
H 4 HOH B 55 255 27 HOH HOH . 
H 4 HOH B 56 256 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 2 62.245 13.276 11.098 0.9 52.85 ? C1 MPD 201 C 1 
HETATM 2 C C2 MPD . . . D 2 62.122 14.698 10.586 0.9 53.12 ? C2 MPD 201 C 1 
HETATM 3 O O2 MPD . . . D 2 60.717 14.989 10.462 0.9 50.21 ? O2 MPD 201 C 1 
HETATM 4 C CM MPD . . . D 2 62.708 15.671 11.595 0.9 53.82 ? CM MPD 201 C 1 
HETATM 5 C C3 MPD . . . D 2 62.778 14.827 9.205 0.9 55.05 ? C3 MPD 201 C 1 
HETATM 6 C C4 MPD . . . D 2 62.667 16.173 8.489 0.9 53.99 ? C4 MPD 201 C 1 
HETATM 7 O O4 MPD . . . D 2 61.325 16.658 8.483 0.9 45.55 ? O4 MPD 201 C 1 
HETATM 8 C C5 MPD . . . D 2 63.575 17.279 8.971 0.9 55.27 ? C5 MPD 201 C 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#