data_7RSF # _model_server_result.job_id px1kulhGeHmtLHuUrIU1SA _model_server_result.datetime_utc '2024-11-09 02:11:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rsf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7RSF # _exptl.entry_id 7RSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RSF _cell.length_a 46.7 _cell.length_b 70.994 _cell.length_c 289.884 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 80 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 A OD1 ASP 115 A ASP 112 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc3 A OE1 GLU 172 A GLU 169 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 H O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 B NE2 HIS 83 B HIS 80 1_555 F ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc6 B OD1 ASP 115 B ASP 112 1_555 F ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc7 B OE1 GLU 172 B GLU 169 1_555 F ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc8 F ZN ZN . B ZN 402 1_555 I O HOH . B HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7RSF _atom_sites.fract_transf_matrix[1][1] 0.021413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 3 GOL A 1 502 502 GOL GOL . E 3 GOL B 1 401 502 GOL GOL . F 2 ZN B 1 402 501 ZN ZN . G 4 CL B 1 403 503 CL CL . H 5 HOH A 1 601 147 HOH HOH . H 5 HOH A 2 602 2 HOH HOH . H 5 HOH A 3 603 136 HOH HOH . H 5 HOH A 4 604 123 HOH HOH . H 5 HOH A 5 605 87 HOH HOH . H 5 HOH A 6 606 97 HOH HOH . H 5 HOH A 7 607 13 HOH HOH . H 5 HOH A 8 608 7 HOH HOH . H 5 HOH A 9 609 113 HOH HOH . H 5 HOH A 10 610 62 HOH HOH . H 5 HOH A 11 611 60 HOH HOH . H 5 HOH A 12 612 116 HOH HOH . H 5 HOH A 13 613 70 HOH HOH . H 5 HOH A 14 614 126 HOH HOH . H 5 HOH A 15 615 43 HOH HOH . H 5 HOH A 16 616 139 HOH HOH . H 5 HOH A 17 617 122 HOH HOH . H 5 HOH A 18 618 146 HOH HOH . H 5 HOH A 19 619 155 HOH HOH . H 5 HOH A 20 620 101 HOH HOH . H 5 HOH A 21 621 57 HOH HOH . H 5 HOH A 22 622 129 HOH HOH . H 5 HOH A 23 623 21 HOH HOH . H 5 HOH A 24 624 111 HOH HOH . H 5 HOH A 25 625 19 HOH HOH . H 5 HOH A 26 626 128 HOH HOH . H 5 HOH A 27 627 72 HOH HOH . H 5 HOH A 28 628 78 HOH HOH . H 5 HOH A 29 629 12 HOH HOH . H 5 HOH A 30 630 73 HOH HOH . H 5 HOH A 31 631 28 HOH HOH . H 5 HOH A 32 632 48 HOH HOH . H 5 HOH A 33 633 9 HOH HOH . H 5 HOH A 34 634 58 HOH HOH . H 5 HOH A 35 635 137 HOH HOH . H 5 HOH A 36 636 98 HOH HOH . H 5 HOH A 37 637 51 HOH HOH . H 5 HOH A 38 638 38 HOH HOH . H 5 HOH A 39 639 31 HOH HOH . H 5 HOH A 40 640 103 HOH HOH . H 5 HOH A 41 641 80 HOH HOH . H 5 HOH A 42 642 154 HOH HOH . H 5 HOH A 43 643 90 HOH HOH . H 5 HOH A 44 644 14 HOH HOH . H 5 HOH A 45 645 34 HOH HOH . H 5 HOH A 46 646 37 HOH HOH . H 5 HOH A 47 647 92 HOH HOH . H 5 HOH A 48 648 124 HOH HOH . H 5 HOH A 49 649 41 HOH HOH . H 5 HOH A 50 650 94 HOH HOH . H 5 HOH A 51 651 18 HOH HOH . H 5 HOH A 52 652 127 HOH HOH . H 5 HOH A 53 653 85 HOH HOH . H 5 HOH A 54 654 109 HOH HOH . H 5 HOH A 55 655 89 HOH HOH . H 5 HOH A 56 656 55 HOH HOH . H 5 HOH A 57 657 125 HOH HOH . H 5 HOH A 58 658 3 HOH HOH . H 5 HOH A 59 659 100 HOH HOH . H 5 HOH A 60 660 138 HOH HOH . H 5 HOH A 61 661 52 HOH HOH . H 5 HOH A 62 662 91 HOH HOH . H 5 HOH A 63 663 143 HOH HOH . H 5 HOH A 64 664 148 HOH HOH . H 5 HOH A 65 665 30 HOH HOH . H 5 HOH A 66 666 108 HOH HOH . H 5 HOH A 67 667 67 HOH HOH . H 5 HOH A 68 668 24 HOH HOH . H 5 HOH A 69 669 151 HOH HOH . H 5 HOH A 70 670 10 HOH HOH . H 5 HOH A 71 671 40 HOH HOH . H 5 HOH A 72 672 93 HOH HOH . H 5 HOH A 73 673 20 HOH HOH . H 5 HOH A 74 674 77 HOH HOH . H 5 HOH A 75 675 1 HOH HOH . H 5 HOH A 76 676 140 HOH HOH . H 5 HOH A 77 677 95 HOH HOH . I 5 HOH B 1 501 145 HOH HOH . I 5 HOH B 2 502 61 HOH HOH . I 5 HOH B 3 503 149 HOH HOH . I 5 HOH B 4 504 23 HOH HOH . I 5 HOH B 5 505 39 HOH HOH . I 5 HOH B 6 506 152 HOH HOH . I 5 HOH B 7 507 86 HOH HOH . I 5 HOH B 8 508 50 HOH HOH . I 5 HOH B 9 509 110 HOH HOH . I 5 HOH B 10 510 112 HOH HOH . I 5 HOH B 11 511 119 HOH HOH . I 5 HOH B 12 512 15 HOH HOH . I 5 HOH B 13 513 68 HOH HOH . I 5 HOH B 14 514 42 HOH HOH . I 5 HOH B 15 515 54 HOH HOH . I 5 HOH B 16 516 153 HOH HOH . I 5 HOH B 17 517 106 HOH HOH . I 5 HOH B 18 518 46 HOH HOH . I 5 HOH B 19 519 120 HOH HOH . I 5 HOH B 20 520 25 HOH HOH . I 5 HOH B 21 521 36 HOH HOH . I 5 HOH B 22 522 59 HOH HOH . I 5 HOH B 23 523 76 HOH HOH . I 5 HOH B 24 524 45 HOH HOH . I 5 HOH B 25 525 65 HOH HOH . I 5 HOH B 26 526 134 HOH HOH . I 5 HOH B 27 527 132 HOH HOH . I 5 HOH B 28 528 63 HOH HOH . I 5 HOH B 29 529 53 HOH HOH . I 5 HOH B 30 530 56 HOH HOH . I 5 HOH B 31 531 81 HOH HOH . I 5 HOH B 32 532 32 HOH HOH . I 5 HOH B 33 533 114 HOH HOH . I 5 HOH B 34 534 33 HOH HOH . I 5 HOH B 35 535 117 HOH HOH . I 5 HOH B 36 536 35 HOH HOH . I 5 HOH B 37 537 8 HOH HOH . I 5 HOH B 38 538 83 HOH HOH . I 5 HOH B 39 539 66 HOH HOH . I 5 HOH B 40 540 11 HOH HOH . I 5 HOH B 41 541 26 HOH HOH . I 5 HOH B 42 542 131 HOH HOH . I 5 HOH B 43 543 88 HOH HOH . I 5 HOH B 44 544 69 HOH HOH . I 5 HOH B 45 545 71 HOH HOH . I 5 HOH B 46 546 5 HOH HOH . I 5 HOH B 47 547 141 HOH HOH . I 5 HOH B 48 548 64 HOH HOH . I 5 HOH B 49 549 75 HOH HOH . I 5 HOH B 50 550 16 HOH HOH . I 5 HOH B 51 551 47 HOH HOH . I 5 HOH B 52 552 135 HOH HOH . I 5 HOH B 53 553 44 HOH HOH . I 5 HOH B 54 554 96 HOH HOH . I 5 HOH B 55 555 99 HOH HOH . I 5 HOH B 56 556 107 HOH HOH . I 5 HOH B 57 557 102 HOH HOH . I 5 HOH B 58 558 49 HOH HOH . I 5 HOH B 59 559 118 HOH HOH . I 5 HOH B 60 560 130 HOH HOH . I 5 HOH B 61 561 4 HOH HOH . I 5 HOH B 62 562 29 HOH HOH . I 5 HOH B 63 563 82 HOH HOH . I 5 HOH B 64 564 79 HOH HOH . I 5 HOH B 65 565 6 HOH HOH . I 5 HOH B 66 566 115 HOH HOH . I 5 HOH B 67 567 22 HOH HOH . I 5 HOH B 68 568 104 HOH HOH . I 5 HOH B 69 569 105 HOH HOH . I 5 HOH B 70 570 150 HOH HOH . I 5 HOH B 71 571 27 HOH HOH . I 5 HOH B 72 572 74 HOH HOH . I 5 HOH B 73 573 133 HOH HOH . I 5 HOH B 74 574 17 HOH HOH . I 5 HOH B 75 575 142 HOH HOH . I 5 HOH B 76 576 84 HOH HOH . I 5 HOH B 77 577 144 HOH HOH . I 5 HOH B 78 578 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 32.601 56.802 3.649 1 70.69 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . E 3 31.59 56.353 2.751 1 63.4 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . E 3 33.188 58.129 3.19 1 74.24 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . E 3 33.77 58.814 4.305 1 72.51 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . E 3 34.197 57.994 2.061 1 72.24 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . E 3 34.931 56.772 2.151 1 70.38 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #