data_7RT2 # _model_server_result.job_id TKGUYtcKQ3Ya_EIygbsM5A _model_server_result.datetime_utc '2024-11-22 12:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7RT2 # _exptl.entry_id 7RT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RT2 _cell.length_a 40.96 _cell.length_b 52.972 _cell.length_c 90.708 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 C MG MG . A MG 202 1_555 G O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc4 C MG MG . A MG 202 1_555 G O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 263 n n C1 C2 GOL sing 264 n n C1 H11 GOL sing 265 n n C1 H12 GOL sing 266 n n O1 HO1 GOL sing 267 n n C2 O2 GOL sing 268 n n C2 C3 GOL sing 269 n n C2 H2 GOL sing 270 n n O2 HO2 GOL sing 271 n n C3 O3 GOL sing 272 n n C3 H31 GOL sing 273 n n C3 H32 GOL sing 274 n n O3 HO3 GOL sing 275 n n # _atom_sites.entry_id 7RT2 _atom_sites.fract_transf_matrix[1][1] 0.024414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 202 MG MG . D 4 7NL A 1 203 301 7NL L98 . E 5 GOL A 1 204 401 GOL GOL . F 6 EDO A 1 205 501 EDO EDO . G 7 HOH A 1 301 91 HOH HOH . G 7 HOH A 2 302 138 HOH HOH . G 7 HOH A 3 303 110 HOH HOH . G 7 HOH A 4 304 103 HOH HOH . G 7 HOH A 5 305 54 HOH HOH . G 7 HOH A 6 306 67 HOH HOH . G 7 HOH A 7 307 134 HOH HOH . G 7 HOH A 8 308 117 HOH HOH . G 7 HOH A 9 309 61 HOH HOH . G 7 HOH A 10 310 175 HOH HOH . G 7 HOH A 11 311 28 HOH HOH . G 7 HOH A 12 312 111 HOH HOH . G 7 HOH A 13 313 56 HOH HOH . G 7 HOH A 14 314 60 HOH HOH . G 7 HOH A 15 315 17 HOH HOH . G 7 HOH A 16 316 73 HOH HOH . G 7 HOH A 17 317 18 HOH HOH . G 7 HOH A 18 318 160 HOH HOH . G 7 HOH A 19 319 156 HOH HOH . G 7 HOH A 20 320 89 HOH HOH . G 7 HOH A 21 321 53 HOH HOH . G 7 HOH A 22 322 26 HOH HOH . G 7 HOH A 23 323 4 HOH HOH . G 7 HOH A 24 324 19 HOH HOH . G 7 HOH A 25 325 49 HOH HOH . G 7 HOH A 26 326 1 HOH HOH . G 7 HOH A 27 327 149 HOH HOH . G 7 HOH A 28 328 2 HOH HOH . G 7 HOH A 29 329 173 HOH HOH . G 7 HOH A 30 330 55 HOH HOH . G 7 HOH A 31 331 9 HOH HOH . G 7 HOH A 32 332 147 HOH HOH . G 7 HOH A 33 333 33 HOH HOH . G 7 HOH A 34 334 109 HOH HOH . G 7 HOH A 35 335 96 HOH HOH . G 7 HOH A 36 336 52 HOH HOH . G 7 HOH A 37 337 15 HOH HOH . G 7 HOH A 38 338 6 HOH HOH . G 7 HOH A 39 339 128 HOH HOH . G 7 HOH A 40 340 62 HOH HOH . G 7 HOH A 41 341 166 HOH HOH . G 7 HOH A 42 342 94 HOH HOH . G 7 HOH A 43 343 20 HOH HOH . G 7 HOH A 44 344 12 HOH HOH . G 7 HOH A 45 345 119 HOH HOH . G 7 HOH A 46 346 3 HOH HOH . G 7 HOH A 47 347 36 HOH HOH . G 7 HOH A 48 348 179 HOH HOH . G 7 HOH A 49 349 101 HOH HOH . G 7 HOH A 50 350 8 HOH HOH . G 7 HOH A 51 351 81 HOH HOH . G 7 HOH A 52 352 87 HOH HOH . G 7 HOH A 53 353 47 HOH HOH . G 7 HOH A 54 354 11 HOH HOH . G 7 HOH A 55 355 108 HOH HOH . G 7 HOH A 56 356 124 HOH HOH . G 7 HOH A 57 357 88 HOH HOH . G 7 HOH A 58 358 13 HOH HOH . G 7 HOH A 59 359 120 HOH HOH . G 7 HOH A 60 360 22 HOH HOH . G 7 HOH A 61 361 40 HOH HOH . G 7 HOH A 62 362 65 HOH HOH . G 7 HOH A 63 363 35 HOH HOH . G 7 HOH A 64 364 21 HOH HOH . G 7 HOH A 65 365 93 HOH HOH . G 7 HOH A 66 366 23 HOH HOH . G 7 HOH A 67 367 7 HOH HOH . G 7 HOH A 68 368 43 HOH HOH . G 7 HOH A 69 369 31 HOH HOH . G 7 HOH A 70 370 25 HOH HOH . G 7 HOH A 71 371 121 HOH HOH . G 7 HOH A 72 372 144 HOH HOH . G 7 HOH A 73 373 57 HOH HOH . G 7 HOH A 74 374 86 HOH HOH . G 7 HOH A 75 375 50 HOH HOH . G 7 HOH A 76 376 102 HOH HOH . G 7 HOH A 77 377 153 HOH HOH . G 7 HOH A 78 378 14 HOH HOH . G 7 HOH A 79 379 30 HOH HOH . G 7 HOH A 80 380 135 HOH HOH . G 7 HOH A 81 381 76 HOH HOH . G 7 HOH A 82 382 98 HOH HOH . G 7 HOH A 83 383 59 HOH HOH . G 7 HOH A 84 384 5 HOH HOH . G 7 HOH A 85 385 100 HOH HOH . G 7 HOH A 86 386 126 HOH HOH . G 7 HOH A 87 387 133 HOH HOH . G 7 HOH A 88 388 82 HOH HOH . G 7 HOH A 89 389 64 HOH HOH . G 7 HOH A 90 390 79 HOH HOH . G 7 HOH A 91 391 58 HOH HOH . G 7 HOH A 92 392 51 HOH HOH . G 7 HOH A 93 393 177 HOH HOH . G 7 HOH A 94 394 152 HOH HOH . G 7 HOH A 95 395 72 HOH HOH . G 7 HOH A 96 396 85 HOH HOH . G 7 HOH A 97 397 78 HOH HOH . G 7 HOH A 98 398 99 HOH HOH . G 7 HOH A 99 399 106 HOH HOH . G 7 HOH A 100 400 41 HOH HOH . G 7 HOH A 101 401 125 HOH HOH . G 7 HOH A 102 402 83 HOH HOH . G 7 HOH A 103 403 113 HOH HOH . G 7 HOH A 104 404 69 HOH HOH . G 7 HOH A 105 405 63 HOH HOH . G 7 HOH A 106 406 71 HOH HOH . G 7 HOH A 107 407 10 HOH HOH . G 7 HOH A 108 408 45 HOH HOH . G 7 HOH A 109 409 139 HOH HOH . G 7 HOH A 110 410 107 HOH HOH . G 7 HOH A 111 411 105 HOH HOH . G 7 HOH A 112 412 68 HOH HOH . G 7 HOH A 113 413 39 HOH HOH . G 7 HOH A 114 414 129 HOH HOH . G 7 HOH A 115 415 44 HOH HOH . G 7 HOH A 116 416 132 HOH HOH . G 7 HOH A 117 417 42 HOH HOH . G 7 HOH A 118 418 165 HOH HOH . G 7 HOH A 119 419 146 HOH HOH . G 7 HOH A 120 420 115 HOH HOH . G 7 HOH A 121 421 70 HOH HOH . G 7 HOH A 122 422 27 HOH HOH . G 7 HOH A 123 423 46 HOH HOH . G 7 HOH A 124 424 90 HOH HOH . G 7 HOH A 125 425 16 HOH HOH . G 7 HOH A 126 426 167 HOH HOH . G 7 HOH A 127 427 161 HOH HOH . G 7 HOH A 128 428 163 HOH HOH . G 7 HOH A 129 429 75 HOH HOH . G 7 HOH A 130 430 112 HOH HOH . G 7 HOH A 131 431 118 HOH HOH . G 7 HOH A 132 432 80 HOH HOH . G 7 HOH A 133 433 145 HOH HOH . G 7 HOH A 134 434 84 HOH HOH . G 7 HOH A 135 435 142 HOH HOH . G 7 HOH A 136 436 95 HOH HOH . G 7 HOH A 137 437 104 HOH HOH . G 7 HOH A 138 438 127 HOH HOH . G 7 HOH A 139 439 174 HOH HOH . G 7 HOH A 140 440 141 HOH HOH . G 7 HOH A 141 441 122 HOH HOH . G 7 HOH A 142 442 170 HOH HOH . G 7 HOH A 143 443 171 HOH HOH . G 7 HOH A 144 444 38 HOH HOH . G 7 HOH A 145 445 148 HOH HOH . G 7 HOH A 146 446 164 HOH HOH . G 7 HOH A 147 447 97 HOH HOH . G 7 HOH A 148 448 114 HOH HOH . G 7 HOH A 149 449 159 HOH HOH . G 7 HOH A 150 450 172 HOH HOH . G 7 HOH A 151 451 178 HOH HOH . G 7 HOH A 152 452 92 HOH HOH . G 7 HOH A 153 453 130 HOH HOH . G 7 HOH A 154 454 74 HOH HOH . G 7 HOH A 155 455 150 HOH HOH . G 7 HOH A 156 456 143 HOH HOH . G 7 HOH A 157 457 158 HOH HOH . G 7 HOH A 158 458 169 HOH HOH . G 7 HOH A 159 459 176 HOH HOH . G 7 HOH A 160 460 140 HOH HOH . G 7 HOH A 161 461 29 HOH HOH . G 7 HOH A 162 462 137 HOH HOH . G 7 HOH A 163 463 162 HOH HOH . G 7 HOH A 164 464 151 HOH HOH . G 7 HOH A 165 465 131 HOH HOH . G 7 HOH A 166 466 66 HOH HOH . G 7 HOH A 167 467 116 HOH HOH . G 7 HOH A 168 468 157 HOH HOH . G 7 HOH A 169 469 154 HOH HOH . G 7 HOH A 170 470 136 HOH HOH . G 7 HOH A 171 471 155 HOH HOH . G 7 HOH A 172 472 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 0.831 11.829 -12.187 1 29.21 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 5 1.5 11.44 -13.331 1 26.01 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 5 1.452 13.253 -11.976 1 37.11 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 5 0.533 14.136 -12.408 1 41.01 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 5 1.929 13.248 -10.607 1 44.45 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 5 2.55 14.49 -10.403 1 48.41 ? O3 GOL 204 A 1 HETATM 7 H H11 GOL . . . E 5 -0.132 11.876 -12.287 1 35.06 ? H11 GOL 204 A 1 HETATM 8 H H12 GOL . . . E 5 0.991 11.257 -11.42 1 35.06 ? H12 GOL 204 A 1 HETATM 9 H HO1 GOL . . . E 5 1.338 10.603 -13.432 1 31.22 ? HO1 GOL 204 A 1 HETATM 10 H H2 GOL . . . E 5 2.247 13.494 -12.478 1 44.53 ? H2 GOL 204 A 1 HETATM 11 H HO2 GOL . . . E 5 -0.084 14.166 -11.81 1 49.22 ? HO2 GOL 204 A 1 HETATM 12 H H31 GOL . . . E 5 1.181 13.086 -10.011 1 53.35 ? H31 GOL 204 A 1 HETATM 13 H H32 GOL . . . E 5 2.525 12.492 -10.481 1 53.35 ? H32 GOL 204 A 1 HETATM 14 H HO3 GOL . . . E 5 1.928 15.08 -10.499 1 58.09 ? HO3 GOL 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #