data_7RT4 # _model_server_result.job_id jJf0mUN4BmsFjWLKz8FSRQ _model_server_result.datetime_utc '2024-11-16 19:49:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7RT4 # _exptl.entry_id 7RT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.002 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(8-chloronaphthalen-1-yl)-8-fluoro-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-4-(piperazin-1-yl)pyrido[4,3-d]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RT4 _cell.length_a 39.842 _cell.length_b 51.693 _cell.length_c 88.946 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 C MG MG . A MG 202 1_555 F O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 C MG MG . A MG 202 1_555 F O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 C MG MG . A MG 202 1_555 F O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 C MG MG . A MG 202 1_555 F O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'C27 H28 Cl F N6 O' _chem_comp.formula_weight 507.002 _chem_comp.id 7IZ _chem_comp.mon_nstd_flag . _chem_comp.name 7-(8-chloronaphthalen-1-yl)-8-fluoro-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-4-(piperazin-1-yl)pyrido[4,3-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 7IZ doub 1 n y C1 C2 7IZ sing 2 n y C6 C5 7IZ sing 3 n y C2 C3 7IZ doub 4 n y C5 C20 7IZ sing 5 n n C5 C4 7IZ doub 6 n y N19 C18 7IZ doub 7 n y N19 C20 7IZ sing 8 n y C18 C12 7IZ sing 9 n y C20 C21 7IZ doub 10 n y C3 C4 7IZ sing 11 n y C3 C7 7IZ sing 12 n y C30 N26 7IZ sing 13 n n C4 C10 7IZ sing 14 n y C21 F23 7IZ sing 15 n n C21 C13 7IZ sing 16 n y C12 C13 7IZ doub 17 n y C12 C17 7IZ sing 18 n y C33 N34 7IZ sing 19 n n C33 C32 7IZ sing 20 n n C37 N31 7IZ sing 21 n n C37 C35 7IZ sing 22 n n N31 C17 7IZ sing 23 n n N31 C32 7IZ sing 24 n n C7 C8 7IZ doub 25 n y C13 N14 7IZ sing 26 n y N26 C27 7IZ sing 27 n n N26 C25 7IZ sing 28 n n C17 N16 7IZ doub 29 n y N34 C35 7IZ sing 30 n n C27 C28 7IZ sing 31 n n N14 C15 7IZ doub 32 n y N16 C15 7IZ sing 33 n y C15 O22 7IZ sing 34 n n C10 CL1 7IZ sing 35 n n C10 C9 7IZ doub 36 n y C8 C9 7IZ sing 37 n y C25 C24 7IZ sing 38 n n C25 C29 7IZ sing 39 n n C24 O22 7IZ sing 40 n n C28 C29 7IZ sing 41 n n C1 H1 7IZ sing 42 n n C2 H2 7IZ sing 43 n n C6 H3 7IZ sing 44 n n C25 H4 7IZ sing 45 n n C27 H5 7IZ sing 46 n n C27 H6 7IZ sing 47 n n C29 H7 7IZ sing 48 n n C29 H8 7IZ sing 49 n n C30 H9 7IZ sing 50 n n C30 H10 7IZ sing 51 n n C30 H11 7IZ sing 52 n n C18 H12 7IZ sing 53 n n C24 H13 7IZ sing 54 n n C24 H14 7IZ sing 55 n n C28 H15 7IZ sing 56 n n C28 H16 7IZ sing 57 n n C32 H17 7IZ sing 58 n n C32 H18 7IZ sing 59 n n C33 H19 7IZ sing 60 n n C33 H20 7IZ sing 61 n n C35 H21 7IZ sing 62 n n C35 H22 7IZ sing 63 n n C37 H23 7IZ sing 64 n n C37 H24 7IZ sing 65 n n C7 H25 7IZ sing 66 n n C8 H26 7IZ sing 67 n n C9 H27 7IZ sing 68 n n N34 H29 7IZ sing 69 n n # _atom_sites.entry_id 7RT4 _atom_sites.fract_transf_matrix[1][1] 0.025099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 202 MG MG . D 4 7IZ A 1 203 301 7IZ 345 . E 5 GOL A 1 204 302 GOL GOL . F 6 HOH A 1 301 24 HOH HOH . F 6 HOH A 2 302 134 HOH HOH . F 6 HOH A 3 303 161 HOH HOH . F 6 HOH A 4 304 159 HOH HOH . F 6 HOH A 5 305 124 HOH HOH . F 6 HOH A 6 306 133 HOH HOH . F 6 HOH A 7 307 149 HOH HOH . F 6 HOH A 8 308 153 HOH HOH . F 6 HOH A 9 309 125 HOH HOH . F 6 HOH A 10 310 111 HOH HOH . F 6 HOH A 11 311 123 HOH HOH . F 6 HOH A 12 312 122 HOH HOH . F 6 HOH A 13 313 22 HOH HOH . F 6 HOH A 14 314 12 HOH HOH . F 6 HOH A 15 315 29 HOH HOH . F 6 HOH A 16 316 33 HOH HOH . F 6 HOH A 17 317 139 HOH HOH . F 6 HOH A 18 318 138 HOH HOH . F 6 HOH A 19 319 27 HOH HOH . F 6 HOH A 20 320 126 HOH HOH . F 6 HOH A 21 321 120 HOH HOH . F 6 HOH A 22 322 44 HOH HOH . F 6 HOH A 23 323 16 HOH HOH . F 6 HOH A 24 324 63 HOH HOH . F 6 HOH A 25 325 163 HOH HOH . F 6 HOH A 26 326 51 HOH HOH . F 6 HOH A 27 327 18 HOH HOH . F 6 HOH A 28 328 10 HOH HOH . F 6 HOH A 29 329 50 HOH HOH . F 6 HOH A 30 330 21 HOH HOH . F 6 HOH A 31 331 1 HOH HOH . F 6 HOH A 32 332 14 HOH HOH . F 6 HOH A 33 333 15 HOH HOH . F 6 HOH A 34 334 142 HOH HOH . F 6 HOH A 35 335 5 HOH HOH . F 6 HOH A 36 336 4 HOH HOH . F 6 HOH A 37 337 37 HOH HOH . F 6 HOH A 38 338 103 HOH HOH . F 6 HOH A 39 339 23 HOH HOH . F 6 HOH A 40 340 160 HOH HOH . F 6 HOH A 41 341 59 HOH HOH . F 6 HOH A 42 342 137 HOH HOH . F 6 HOH A 43 343 40 HOH HOH . F 6 HOH A 44 344 36 HOH HOH . F 6 HOH A 45 345 131 HOH HOH . F 6 HOH A 46 346 2 HOH HOH . F 6 HOH A 47 347 17 HOH HOH . F 6 HOH A 48 348 25 HOH HOH . F 6 HOH A 49 349 6 HOH HOH . F 6 HOH A 50 350 52 HOH HOH . F 6 HOH A 51 351 141 HOH HOH . F 6 HOH A 52 352 112 HOH HOH . F 6 HOH A 53 353 152 HOH HOH . F 6 HOH A 54 354 8 HOH HOH . F 6 HOH A 55 355 118 HOH HOH . F 6 HOH A 56 356 110 HOH HOH . F 6 HOH A 57 357 150 HOH HOH . F 6 HOH A 58 358 26 HOH HOH . F 6 HOH A 59 359 145 HOH HOH . F 6 HOH A 60 360 7 HOH HOH . F 6 HOH A 61 361 71 HOH HOH . F 6 HOH A 62 362 48 HOH HOH . F 6 HOH A 63 363 56 HOH HOH . F 6 HOH A 64 364 38 HOH HOH . F 6 HOH A 65 365 104 HOH HOH . F 6 HOH A 66 366 11 HOH HOH . F 6 HOH A 67 367 32 HOH HOH . F 6 HOH A 68 368 41 HOH HOH . F 6 HOH A 69 369 135 HOH HOH . F 6 HOH A 70 370 170 HOH HOH . F 6 HOH A 71 371 136 HOH HOH . F 6 HOH A 72 372 140 HOH HOH . F 6 HOH A 73 373 144 HOH HOH . F 6 HOH A 74 374 73 HOH HOH . F 6 HOH A 75 375 119 HOH HOH . F 6 HOH A 76 376 9 HOH HOH . F 6 HOH A 77 377 128 HOH HOH . F 6 HOH A 78 378 129 HOH HOH . F 6 HOH A 79 379 151 HOH HOH . F 6 HOH A 80 380 165 HOH HOH . F 6 HOH A 81 381 67 HOH HOH . F 6 HOH A 82 382 34 HOH HOH . F 6 HOH A 83 383 70 HOH HOH . F 6 HOH A 84 384 116 HOH HOH . F 6 HOH A 85 385 19 HOH HOH . F 6 HOH A 86 386 31 HOH HOH . F 6 HOH A 87 387 132 HOH HOH . F 6 HOH A 88 388 64 HOH HOH . F 6 HOH A 89 389 42 HOH HOH . F 6 HOH A 90 390 143 HOH HOH . F 6 HOH A 91 391 147 HOH HOH . F 6 HOH A 92 392 127 HOH HOH . F 6 HOH A 93 393 167 HOH HOH . F 6 HOH A 94 394 20 HOH HOH . F 6 HOH A 95 395 117 HOH HOH . F 6 HOH A 96 396 105 HOH HOH . F 6 HOH A 97 397 46 HOH HOH . F 6 HOH A 98 398 154 HOH HOH . F 6 HOH A 99 399 13 HOH HOH . F 6 HOH A 100 400 156 HOH HOH . F 6 HOH A 101 401 91 HOH HOH . F 6 HOH A 102 402 157 HOH HOH . F 6 HOH A 103 403 72 HOH HOH . F 6 HOH A 104 404 158 HOH HOH . F 6 HOH A 105 405 93 HOH HOH . F 6 HOH A 106 406 115 HOH HOH . F 6 HOH A 107 407 168 HOH HOH . F 6 HOH A 108 408 121 HOH HOH . F 6 HOH A 109 409 60 HOH HOH . F 6 HOH A 110 410 106 HOH HOH . F 6 HOH A 111 411 155 HOH HOH . F 6 HOH A 112 412 130 HOH HOH . F 6 HOH A 113 413 148 HOH HOH . F 6 HOH A 114 414 114 HOH HOH . F 6 HOH A 115 415 169 HOH HOH . F 6 HOH A 116 416 162 HOH HOH . F 6 HOH A 117 417 166 HOH HOH . F 6 HOH A 118 418 146 HOH HOH . F 6 HOH A 119 419 113 HOH HOH . F 6 HOH A 120 420 61 HOH HOH . F 6 HOH A 121 421 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7IZ . . . D 4 -16.869 -4.402 -26.238 1 26.46 ? C1 7IZ 203 A 1 HETATM 2 C C2 7IZ . . . D 4 -15.792 -4.297 -25.361 1 24.54 ? C2 7IZ 203 A 1 HETATM 3 C C3 7IZ . . . D 4 -15.978 -3.966 -24.04 1 23.14 ? C3 7IZ 203 A 1 HETATM 4 C C4 7IZ . . . D 4 -17.296 -3.72 -23.52 1 26.47 ? C4 7IZ 203 A 1 HETATM 5 C C5 7IZ . . . D 4 -18.384 -3.791 -24.448 1 24.95 ? C5 7IZ 203 A 1 HETATM 6 C C6 7IZ . . . D 4 -18.166 -4.158 -25.775 1 25.54 ? C6 7IZ 203 A 1 HETATM 7 C C12 7IZ . . . D 4 -22.607 -3.918 -23.482 1 30.62 ? C12 7IZ 203 A 1 HETATM 8 C C13 7IZ . . . D 4 -21.763 -5.008 -23.167 1 24.49 ? C13 7IZ 203 A 1 HETATM 9 C C15 7IZ . . . D 4 -23.529 -6.218 -22.267 1 25.82 ? C15 7IZ 203 A 1 HETATM 10 C C17 7IZ . . . D 4 -23.985 -4.11 -23.109 1 26.54 ? C17 7IZ 203 A 1 HETATM 11 C C25 7IZ . . . D 4 -25.79 -9.174 -21.858 1 30.88 ? C25 7IZ 203 A 1 HETATM 12 C C27 7IZ . . . D 4 -24.137 -10.524 -22.94 1 25.21 ? C27 7IZ 203 A 1 HETATM 13 C C29 7IZ . . . D 4 -25.087 -9.93 -20.716 1 32.36 ? C29 7IZ 203 A 1 HETATM 14 C C30 7IZ . . . D 4 -26.447 -10.531 -23.681 1 32.7 ? C30 7IZ 203 A 1 HETATM 15 C C10 7IZ . . . D 4 -17.382 -3.355 -22.146 1 24.91 ? C10 7IZ 203 A 1 HETATM 16 C C18 7IZ . . . D 4 -22.049 -2.801 -24.129 1 22.37 ? C18 7IZ 203 A 1 HETATM 17 C C20 7IZ . . . D 4 -19.918 -3.665 -24.126 1 29.13 ? C20 7IZ 203 A 1 HETATM 18 C C21 7IZ . . . D 4 -20.416 -4.856 -23.514 1 25.8 ? C21 7IZ 203 A 1 HETATM 19 C C24 7IZ . . . D 4 -25.439 -7.663 -21.778 1 27.58 ? C24 7IZ 203 A 1 HETATM 20 C C28 7IZ . . . D 4 -24.223 -11.007 -21.455 1 33.06 ? C28 7IZ 203 A 1 HETATM 21 C C32 7IZ . . . D 4 -26.396 -3.598 -22.921 1 28.67 ? C32 7IZ 203 A 1 HETATM 22 C C33 7IZ . . . D 4 -27.524 -2.671 -23.393 1 29.04 ? C33 7IZ 203 A 1 HETATM 23 C C35 7IZ . . . D 4 -25.904 -0.954 -22.47 1 25.94 ? C35 7IZ 203 A 1 HETATM 24 C C37 7IZ . . . D 4 -24.853 -1.62 -23.392 1 27.57 ? C37 7IZ 203 A 1 HETATM 25 C C7 7IZ . . . D 4 -14.824 -3.897 -23.242 1 17.82 ? C7 7IZ 203 A 1 HETATM 26 C C8 7IZ . . . D 4 -14.953 -3.556 -21.91 1 24.07 ? C8 7IZ 203 A 1 HETATM 27 C C9 7IZ . . . D 4 -16.208 -3.298 -21.376 1 25.51 ? C9 7IZ 203 A 1 HETATM 28 F F23 7IZ . . . D 4 -19.589 -5.898 -23.167 1 23.95 ? F23 7IZ 203 A 1 HETATM 29 N N14 7IZ . . . D 4 -22.218 -6.129 -22.566 1 27.62 ? N14 7IZ 203 A 1 HETATM 30 N N16 7IZ . . . D 4 -24.401 -5.272 -22.512 1 23.92 ? N16 7IZ 203 A 1 HETATM 31 N N19 7IZ . . . D 4 -20.74 -2.676 -24.439 1 26.3 ? N19 7IZ 203 A 1 HETATM 32 N N26 7IZ . . . D 4 -25.364 -9.721 -23.114 1 39.87 ? N26 7IZ 203 A 1 HETATM 33 N N31 7IZ . . . D 4 -25.076 -3.106 -23.356 1 28.05 ? N31 7IZ 203 A 1 HETATM 34 N N34 7IZ . . . D 4 -27.274 -1.239 -22.985 1 26.29 ? N34 7IZ 203 A 1 HETATM 35 O O22 7IZ . . . D 4 -24.011 -7.426 -21.649 1 25.88 ? O22 7IZ 203 A 1 HETATM 36 CL CL1 7IZ . . . D 4 -18.964 -2.956 -21.408 1 23.83 ? CL1 7IZ 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 36 #