data_7RTI # _model_server_result.job_id MkMr8Tfj7F4ab3x4mcijiA _model_server_result.datetime_utc '2025-06-22 22:45:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7RTI # _exptl.entry_id 7RTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RTI _cell.length_a 67.79 _cell.length_b 97.08 _cell.length_c 105.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DT 3 A DT 3 1_555 B N1 DA 15 B DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 3 A DT 3 1_555 B N6 DA 15 B DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 4 A DC 4 1_555 B N1 DG 14 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 4 A DC 4 1_555 B O6 DG 14 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 4 A DC 4 1_555 B N2 DG 14 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 5 A DT 5 1_555 B N1 DA 13 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 5 A DT 5 1_555 B N6 DA 13 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 6 A DT 6 1_555 B N1 DA 12 B DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 6 A DT 6 1_555 B N6 DA 12 B DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 7 A DT 7 1_555 B N1 DA 11 B DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 7 A DT 7 1_555 B N6 DA 11 B DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 8 A DC 8 1_555 B N1 DG 10 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 8 A DC 8 1_555 B O6 DG 10 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 8 A DC 8 1_555 B N2 DG 10 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 9 A DC 9 1_555 B N1 DG 9 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 9 A DC 9 1_555 B O6 DG 9 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 9 A DC 9 1_555 B N2 DG 9 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 10 A DC 10 1_555 B N1 DG 8 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 10 A DC 10 1_555 B O6 DG 8 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 10 A DC 10 1_555 B N2 DG 8 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 11 A DA 11 1_555 B N3 DT 7 B DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 11 A DA 11 1_555 B O4 DT 7 B DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 12 A DC 12 1_555 B N1 DG 6 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 12 A DC 12 1_555 B O6 DG 6 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 12 A DC 12 1_555 B N2 DG 6 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DG 13 A DG 13 1_555 B N3 DC 5 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N2 DG 13 A DG 13 1_555 B O2 DC 5 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O6 DG 13 A DG 13 1_555 B N4 DC 5 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N1 DG 14 A DG 14 1_555 B N3 DC 4 B DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N2 DG 14 A DG 14 1_555 B O2 DC 4 B DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O6 DG 14 A DG 14 1_555 B N4 DC 4 B DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DT 15 A DT 15 1_555 B N1 DA 3 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O4 DT 15 A DT 15 1_555 B N6 DA 3 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 7RTI _atom_sites.fract_transf_matrix[1][1] 0.014751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 EDO A 1 101 2 EDO EDO . F 5 EDO C 1 501 3 EDO EDO . G 6 HOH A 1 201 142 HOH HOH . G 6 HOH A 2 202 130 HOH HOH . G 6 HOH A 3 203 26 HOH HOH . G 6 HOH A 4 204 51 HOH HOH . G 6 HOH A 5 205 85 HOH HOH . G 6 HOH A 6 206 58 HOH HOH . G 6 HOH A 7 207 96 HOH HOH . G 6 HOH A 8 208 91 HOH HOH . G 6 HOH A 9 209 7 HOH HOH . G 6 HOH A 10 210 15 HOH HOH . G 6 HOH A 11 211 100 HOH HOH . G 6 HOH A 12 212 34 HOH HOH . G 6 HOH A 13 213 39 HOH HOH . G 6 HOH A 14 214 97 HOH HOH . G 6 HOH A 15 215 92 HOH HOH . G 6 HOH A 16 216 101 HOH HOH . H 6 HOH B 1 101 126 HOH HOH . H 6 HOH B 2 102 113 HOH HOH . H 6 HOH B 3 103 1 HOH HOH . H 6 HOH B 4 104 115 HOH HOH . H 6 HOH B 5 105 71 HOH HOH . H 6 HOH B 6 106 127 HOH HOH . H 6 HOH B 7 107 114 HOH HOH . H 6 HOH B 8 108 98 HOH HOH . H 6 HOH B 9 109 81 HOH HOH . H 6 HOH B 10 110 52 HOH HOH . H 6 HOH B 11 111 73 HOH HOH . H 6 HOH B 12 112 56 HOH HOH . I 6 HOH C 1 601 132 HOH HOH . I 6 HOH C 2 602 79 HOH HOH . I 6 HOH C 3 603 62 HOH HOH . I 6 HOH C 4 604 117 HOH HOH . I 6 HOH C 5 605 145 HOH HOH . I 6 HOH C 6 606 102 HOH HOH . I 6 HOH C 7 607 60 HOH HOH . I 6 HOH C 8 608 59 HOH HOH . I 6 HOH C 9 609 112 HOH HOH . I 6 HOH C 10 610 140 HOH HOH . I 6 HOH C 11 611 61 HOH HOH . I 6 HOH C 12 612 24 HOH HOH . I 6 HOH C 13 613 38 HOH HOH . I 6 HOH C 14 614 136 HOH HOH . I 6 HOH C 15 615 43 HOH HOH . I 6 HOH C 16 616 57 HOH HOH . I 6 HOH C 17 617 64 HOH HOH . I 6 HOH C 18 618 129 HOH HOH . I 6 HOH C 19 619 144 HOH HOH . I 6 HOH C 20 620 135 HOH HOH . I 6 HOH C 21 621 65 HOH HOH . I 6 HOH C 22 622 31 HOH HOH . I 6 HOH C 23 623 138 HOH HOH . I 6 HOH C 24 624 41 HOH HOH . I 6 HOH C 25 625 11 HOH HOH . I 6 HOH C 26 626 16 HOH HOH . I 6 HOH C 27 627 141 HOH HOH . I 6 HOH C 28 628 76 HOH HOH . I 6 HOH C 29 629 63 HOH HOH . I 6 HOH C 30 630 77 HOH HOH . I 6 HOH C 31 631 107 HOH HOH . I 6 HOH C 32 632 5 HOH HOH . I 6 HOH C 33 633 46 HOH HOH . I 6 HOH C 34 634 9 HOH HOH . I 6 HOH C 35 635 55 HOH HOH . I 6 HOH C 36 636 8 HOH HOH . I 6 HOH C 37 637 2 HOH HOH . I 6 HOH C 38 638 50 HOH HOH . I 6 HOH C 39 639 80 HOH HOH . I 6 HOH C 40 640 12 HOH HOH . I 6 HOH C 41 641 3 HOH HOH . I 6 HOH C 42 642 123 HOH HOH . I 6 HOH C 43 643 99 HOH HOH . I 6 HOH C 44 644 40 HOH HOH . I 6 HOH C 45 645 93 HOH HOH . I 6 HOH C 46 646 72 HOH HOH . I 6 HOH C 47 647 14 HOH HOH . I 6 HOH C 48 648 116 HOH HOH . I 6 HOH C 49 649 25 HOH HOH . I 6 HOH C 50 650 10 HOH HOH . I 6 HOH C 51 651 17 HOH HOH . I 6 HOH C 52 652 95 HOH HOH . I 6 HOH C 53 653 118 HOH HOH . I 6 HOH C 54 654 22 HOH HOH . I 6 HOH C 55 655 19 HOH HOH . I 6 HOH C 56 656 49 HOH HOH . I 6 HOH C 57 657 23 HOH HOH . I 6 HOH C 58 658 67 HOH HOH . I 6 HOH C 59 659 69 HOH HOH . I 6 HOH C 60 660 75 HOH HOH . I 6 HOH C 61 661 128 HOH HOH . I 6 HOH C 62 662 44 HOH HOH . I 6 HOH C 63 663 82 HOH HOH . I 6 HOH C 64 664 66 HOH HOH . I 6 HOH C 65 665 131 HOH HOH . I 6 HOH C 66 666 54 HOH HOH . I 6 HOH C 67 667 30 HOH HOH . I 6 HOH C 68 668 121 HOH HOH . I 6 HOH C 69 669 137 HOH HOH . I 6 HOH C 70 670 74 HOH HOH . I 6 HOH C 71 671 87 HOH HOH . I 6 HOH C 72 672 29 HOH HOH . I 6 HOH C 73 673 134 HOH HOH . I 6 HOH C 74 674 45 HOH HOH . I 6 HOH C 75 675 27 HOH HOH . I 6 HOH C 76 676 124 HOH HOH . I 6 HOH C 77 677 42 HOH HOH . I 6 HOH C 78 678 35 HOH HOH . I 6 HOH C 79 679 6 HOH HOH . I 6 HOH C 80 680 133 HOH HOH . I 6 HOH C 81 681 122 HOH HOH . I 6 HOH C 82 682 86 HOH HOH . I 6 HOH C 83 683 105 HOH HOH . I 6 HOH C 84 684 108 HOH HOH . I 6 HOH C 85 685 4 HOH HOH . I 6 HOH C 86 686 119 HOH HOH . I 6 HOH C 87 687 94 HOH HOH . I 6 HOH C 88 688 47 HOH HOH . I 6 HOH C 89 689 83 HOH HOH . I 6 HOH C 90 690 21 HOH HOH . I 6 HOH C 91 691 32 HOH HOH . I 6 HOH C 92 692 28 HOH HOH . I 6 HOH C 93 693 48 HOH HOH . I 6 HOH C 94 694 37 HOH HOH . I 6 HOH C 95 695 18 HOH HOH . I 6 HOH C 96 696 106 HOH HOH . I 6 HOH C 97 697 36 HOH HOH . I 6 HOH C 98 698 20 HOH HOH . I 6 HOH C 99 699 88 HOH HOH . I 6 HOH C 100 700 139 HOH HOH . I 6 HOH C 101 701 13 HOH HOH . I 6 HOH C 102 702 125 HOH HOH . I 6 HOH C 103 703 84 HOH HOH . I 6 HOH C 104 704 68 HOH HOH . I 6 HOH C 105 705 111 HOH HOH . I 6 HOH C 106 706 110 HOH HOH . I 6 HOH C 107 707 103 HOH HOH . I 6 HOH C 108 708 120 HOH HOH . I 6 HOH C 109 709 70 HOH HOH . I 6 HOH C 110 710 109 HOH HOH . I 6 HOH C 111 711 104 HOH HOH . I 6 HOH C 112 712 90 HOH HOH . I 6 HOH C 113 713 33 HOH HOH . I 6 HOH C 114 714 53 HOH HOH . I 6 HOH C 115 715 89 HOH HOH . I 6 HOH C 116 716 143 HOH HOH . I 6 HOH C 117 717 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -1.612 -9.067 9.548 1 41.51 ? C1 EDO 501 C 1 HETATM 2 O O1 EDO . . . F 5 -0.802 -7.899 9.74 1 41.15 ? O1 EDO 501 C 1 HETATM 3 C C2 EDO . . . F 5 -3.039 -8.748 9.991 1 38.61 ? C2 EDO 501 C 1 HETATM 4 O O2 EDO . . . F 5 -3.492 -9.684 10.964 1 44.51 ? O2 EDO 501 C 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 107 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 1116 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #