data_7RU9 # _model_server_result.job_id VZgh9PSO1AlvY6Gw9F8U6Q _model_server_result.datetime_utc '2024-12-26 15:18:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ru9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 7RU9 # _exptl.entry_id 7RU9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RU9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 47 A THR 45 1_555 J MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc2 A SG CYS 285 A CYS 283 1_555 K ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A SG CYS 288 A CYS 286 1_555 K ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 I O2G ATP . A ATP 401 1_555 J MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc5 I O2B ATP . A ATP 401 1_555 J MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc6 K ZN ZN . A ZN 403 1_555 B SG CYS 285 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 K ZN ZN . A ZN 403 1_555 B SG CYS 288 B CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 B OG1 THR 47 B THR 45 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc9 L O2G ATP . B ATP 401 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc10 L O2B ATP . B ATP 401 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7RU9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ATP A 1 401 401 ATP ATP . J 6 MG A 1 402 402 MG MG . K 7 ZN A 1 403 403 ZN ZN . L 5 ATP B 1 401 401 ATP ATP . M 6 MG B 1 402 402 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 5 148.292 153.962 168.411 1 66.06 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . I 5 147.395 152.778 168.517 1 66.06 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . I 5 147.674 155.138 167.651 1 66.06 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . I 5 149.657 153.641 167.81 1 66.06 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . I 5 149.428 155.738 170.527 1 66.06 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . I 5 150.885 155.525 170.444 1 66.06 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . I 5 148.914 157.035 169.904 1 66.06 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . I 5 148.62 154.55 169.859 1 66.06 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . I 5 148.016 156.618 172.964 1 66.06 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . I 5 148.506 158.011 172.959 1 66.06 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . I 5 146.566 156.433 172.525 1 66.06 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . I 5 148.901 155.697 172.027 1 66.06 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . I 5 148.192 155.962 174.389 1 66.06 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . I 5 147.609 154.68 174.698 1 66.06 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . I 5 146.645 154.809 175.849 1 66.06 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . I 5 147.429 155.143 177.016 1 66.06 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . I 5 145.709 155.999 175.658 1 66.06 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . I 5 144.599 155.761 176.512 1 66.06 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . I 5 146.486 157.138 176.31 1 66.06 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . I 5 145.509 158.007 176.863 1 66.06 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . I 5 147.055 156.408 177.517 1 66.06 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . I 5 148.274 157.04 177.997 1 66.06 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . I 5 149.382 157.365 177.262 1 66.06 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . I 5 150.34 157.926 177.957 1 66.06 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . I 5 149.827 157.97 179.244 1 66.06 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . I 5 150.35 158.449 180.459 1 66.06 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . I 5 151.562 158.999 180.581 1 66.06 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . I 5 149.577 158.343 181.561 1 66.06 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . I 5 148.366 157.795 181.446 1 66.06 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . I 5 147.768 157.308 180.357 1 66.06 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . I 5 148.554 157.427 179.283 1 66.06 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #