data_7RUH # _model_server_result.job_id T3t-GD08n0UjT0i4seqpkg _model_server_result.datetime_utc '2024-10-19 03:48:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ruh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7RUH # _exptl.entry_id 7RUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 719.708 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(5-{[(2-fluorophenyl)carbamoyl]amino}-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-1H-indol-4-yl}-2,2,2-trifluoroethane-1-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RUH _cell.length_a 32.98 _cell.length_b 53.168 _cell.length_c 72.481 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 25 A LYS 355 1_555 A N CME 26 A CME 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CME 26 A CME 356 1_555 A N CYS 27 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C TYR 60 A TYR 390 1_555 A N CME 61 A CME 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C CME 61 A CME 391 1_555 A N ASP 62 A ASP 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C35 H29 F4 N7 O4 S' _chem_comp.formula_weight 719.708 _chem_comp.id 7QZ _chem_comp.mon_nstd_flag . _chem_comp.name N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(5-{[(2-fluorophenyl)carbamoyl]amino}-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-1H-indol-4-yl}-2,2,2-trifluoroethane-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C46 C47 7QZ doub 1 n y C46 C45 7QZ sing 2 n y C47 C48 7QZ sing 3 n y C45 C44 7QZ doub 4 n y C48 F49 7QZ sing 5 n n C48 C43 7QZ doub 6 n y C44 C43 7QZ sing 7 n y C29 N30 7QZ doub 8 n y C29 C28 7QZ sing 9 n y C43 N42 7QZ sing 10 n n N30 C25 7QZ sing 11 n y C23 C24 7QZ doub 12 n y C23 C22 7QZ sing 13 n y C28 C27 7QZ doub 14 n y C24 C19 7QZ sing 15 n y N42 C41 7QZ sing 16 n n C22 C21 7QZ doub 17 n y C18 C17 7QZ sing 18 n n C25 C17 7QZ sing 19 n n C25 C26 7QZ doub 20 n y C19 C17 7QZ sing 21 n n C19 N20 7QZ doub 22 n y C27 C26 7QZ sing 23 n y C41 O50 7QZ doub 24 n n C41 N40 7QZ sing 25 n n C21 N20 7QZ sing 26 n y C17 N14 7QZ sing 27 n n N40 C02 7QZ sing 28 n n N14 C15 7QZ sing 29 n y N14 C12 7QZ sing 30 n y C02 C03 7QZ doub 31 n n C02 C01 7QZ sing 32 n n C03 C04 7QZ sing 33 n n C15 C16 7QZ doub 34 n y C13 C12 7QZ doub 35 n y C13 C08 7QZ sing 36 n y O51 C01 7QZ doub 37 n n C12 C11 7QZ sing 38 n y C01 N06 7QZ sing 39 n n C04 C08 7QZ sing 40 n n C04 C05 7QZ doub 41 n n C08 C09 7QZ doub 42 n y C16 C11 7QZ sing 43 n y N06 C05 7QZ sing 44 n n N06 C07 7QZ sing 45 n n C11 C10 7QZ doub 46 n y C09 C10 7QZ sing 47 n y C10 N31 7QZ sing 48 n n N31 S32 7QZ sing 49 n n O38 S32 7QZ doub 50 n n S32 C33 7QZ sing 51 n n S32 O39 7QZ doub 52 n n F36 C34 7QZ sing 53 n n C33 C34 7QZ sing 54 n n C34 F35 7QZ sing 55 n n C34 F37 7QZ sing 56 n n C07 H1 7QZ sing 57 n n C07 H2 7QZ sing 58 n n C07 H3 7QZ sing 59 n n C09 H4 7QZ sing 60 n n C13 H5 7QZ sing 61 n n C15 H6 7QZ sing 62 n n C16 H7 7QZ sing 63 n n C18 H8 7QZ sing 64 n n C18 H9 7QZ sing 65 n n C18 H10 7QZ sing 66 n n C21 H11 7QZ sing 67 n n C03 H12 7QZ sing 68 n n C05 H13 7QZ sing 69 n n C22 H14 7QZ sing 70 n n C23 H15 7QZ sing 71 n n C24 H16 7QZ sing 72 n n C26 H17 7QZ sing 73 n n C27 H18 7QZ sing 74 n n C28 H19 7QZ sing 75 n n C29 H20 7QZ sing 76 n n N31 H21 7QZ sing 77 n n C33 H22 7QZ sing 78 n n C33 H23 7QZ sing 79 n n N40 H24 7QZ sing 80 n n N42 H25 7QZ sing 81 n n C44 H26 7QZ sing 82 n n C45 H27 7QZ sing 83 n n C46 H28 7QZ sing 84 n n C47 H29 7QZ sing 85 n n # _atom_sites.entry_id 7RUH _atom_sites.fract_transf_matrix[1][1] 0.030321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7QZ A 1 501 501 7QZ X44 . C 3 HOH A 1 601 55 HOH HOH . C 3 HOH A 2 602 52 HOH HOH . C 3 HOH A 3 603 58 HOH HOH . C 3 HOH A 4 604 39 HOH HOH . C 3 HOH A 5 605 42 HOH HOH . C 3 HOH A 6 606 1 HOH HOH . C 3 HOH A 7 607 31 HOH HOH . C 3 HOH A 8 608 29 HOH HOH . C 3 HOH A 9 609 4 HOH HOH . C 3 HOH A 10 610 61 HOH HOH . C 3 HOH A 11 611 21 HOH HOH . C 3 HOH A 12 612 3 HOH HOH . C 3 HOH A 13 613 35 HOH HOH . C 3 HOH A 14 614 30 HOH HOH . C 3 HOH A 15 615 22 HOH HOH . C 3 HOH A 16 616 27 HOH HOH . C 3 HOH A 17 617 20 HOH HOH . C 3 HOH A 18 618 28 HOH HOH . C 3 HOH A 19 619 40 HOH HOH . C 3 HOH A 20 620 13 HOH HOH . C 3 HOH A 21 621 54 HOH HOH . C 3 HOH A 22 622 57 HOH HOH . C 3 HOH A 23 623 45 HOH HOH . C 3 HOH A 24 624 44 HOH HOH . C 3 HOH A 25 625 8 HOH HOH . C 3 HOH A 26 626 9 HOH HOH . C 3 HOH A 27 627 16 HOH HOH . C 3 HOH A 28 628 62 HOH HOH . C 3 HOH A 29 629 10 HOH HOH . C 3 HOH A 30 630 5 HOH HOH . C 3 HOH A 31 631 41 HOH HOH . C 3 HOH A 32 632 7 HOH HOH . C 3 HOH A 33 633 12 HOH HOH . C 3 HOH A 34 634 47 HOH HOH . C 3 HOH A 35 635 23 HOH HOH . C 3 HOH A 36 636 26 HOH HOH . C 3 HOH A 37 637 18 HOH HOH . C 3 HOH A 38 638 43 HOH HOH . C 3 HOH A 39 639 25 HOH HOH . C 3 HOH A 40 640 17 HOH HOH . C 3 HOH A 41 641 11 HOH HOH . C 3 HOH A 42 642 24 HOH HOH . C 3 HOH A 43 643 36 HOH HOH . C 3 HOH A 44 644 2 HOH HOH . C 3 HOH A 45 645 6 HOH HOH . C 3 HOH A 46 646 51 HOH HOH . C 3 HOH A 47 647 49 HOH HOH . C 3 HOH A 48 648 38 HOH HOH . C 3 HOH A 49 649 64 HOH HOH . C 3 HOH A 50 650 34 HOH HOH . C 3 HOH A 51 651 14 HOH HOH . C 3 HOH A 52 652 15 HOH HOH . C 3 HOH A 53 653 37 HOH HOH . C 3 HOH A 54 654 50 HOH HOH . C 3 HOH A 55 655 48 HOH HOH . C 3 HOH A 56 656 33 HOH HOH . C 3 HOH A 57 657 60 HOH HOH . C 3 HOH A 58 658 53 HOH HOH . C 3 HOH A 59 659 46 HOH HOH . C 3 HOH A 60 660 63 HOH HOH . C 3 HOH A 61 661 59 HOH HOH . C 3 HOH A 62 662 32 HOH HOH . C 3 HOH A 63 663 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C07 7QZ . . . B 2 -5.211 -14.618 -4.084 1 19.68 ? C07 7QZ 501 A 1 HETATM 2 C C08 7QZ . . . B 2 -8.482 -18.734 -4.322 1 21.43 ? C08 7QZ 501 A 1 HETATM 3 C C09 7QZ . . . B 2 -7.813 -19.698 -3.503 1 20.93 ? C09 7QZ 501 A 1 HETATM 4 C C10 7QZ . . . B 2 -8.398 -20.847 -2.936 1 22.16 ? C10 7QZ 501 A 1 HETATM 5 C C11 7QZ . . . B 2 -9.79 -21.118 -3.177 1 24.12 ? C11 7QZ 501 A 1 HETATM 6 C C12 7QZ . . . B 2 -10.492 -20.187 -3.991 1 24.96 ? C12 7QZ 501 A 1 HETATM 7 C C13 7QZ . . . B 2 -9.826 -19.043 -4.534 1 23.44 ? C13 7QZ 501 A 1 HETATM 8 C C15 7QZ . . . B 2 -11.979 -21.817 -3.381 1 26.7 ? C15 7QZ 501 A 1 HETATM 9 C C16 7QZ . . . B 2 -10.758 -22.136 -2.809 1 23.34 ? C16 7QZ 501 A 1 HETATM 10 C C17 7QZ . . . B 2 -12.962 -19.989 -4.879 1 29.45 ? C17 7QZ 501 A 1 HETATM 11 C C18 7QZ . . . B 2 -14.202 -20.875 -4.651 1 30.6 ? C18 7QZ 501 A 1 HETATM 12 C C19 7QZ . . . B 2 -13.268 -18.495 -4.447 1 27.21 ? C19 7QZ 501 A 1 HETATM 13 C C21 7QZ . . . B 2 -12.962 -16.749 -2.909 1 30.17 ? C21 7QZ 501 A 1 HETATM 14 C C01 7QZ . . . B 2 -6.491 -15.171 -6.214 1 17.45 ? C01 7QZ 501 A 1 HETATM 15 C C02 7QZ . . . B 2 -7.426 -16.013 -6.994 1 18.01 ? C02 7QZ 501 A 1 HETATM 16 C C03 7QZ . . . B 2 -8.011 -17.077 -6.337 1 18.42 ? C03 7QZ 501 A 1 HETATM 17 C C04 7QZ . . . B 2 -7.745 -17.458 -4.938 1 19.05 ? C04 7QZ 501 A 1 HETATM 18 C C05 7QZ . . . B 2 -6.841 -16.643 -4.252 1 18.96 ? C05 7QZ 501 A 1 HETATM 19 N N06 7QZ . . . B 2 -6.204 -15.511 -4.844 1 19.75 ? N06 7QZ 501 A 1 HETATM 20 N N14 7QZ . . . B 2 -11.855 -20.614 -4.103 1 25.75 ? N14 7QZ 501 A 1 HETATM 21 N N20 7QZ . . . B 2 -12.712 -18.025 -3.303 1 29.27 ? N20 7QZ 501 A 1 HETATM 22 C C22 7QZ . . . B 2 -13.775 -15.86 -3.626 1 30.45 ? C22 7QZ 501 A 1 HETATM 23 C C23 7QZ . . . B 2 -14.346 -16.34 -4.802 1 32.65 ? C23 7QZ 501 A 1 HETATM 24 C C24 7QZ . . . B 2 -14.096 -17.655 -5.219 1 25.24 ? C24 7QZ 501 A 1 HETATM 25 C C25 7QZ . . . B 2 -12.628 -20.016 -6.422 1 33.13 ? C25 7QZ 501 A 1 HETATM 26 C C26 7QZ . . . B 2 -12.701 -21.193 -7.196 1 38.06 ? C26 7QZ 501 A 1 HETATM 27 C C27 7QZ . . . B 2 -12.377 -21.155 -8.558 1 41.24 ? C27 7QZ 501 A 1 HETATM 28 C C28 7QZ . . . B 2 -11.978 -19.96 -9.146 1 36.96 ? C28 7QZ 501 A 1 HETATM 29 C C29 7QZ . . . B 2 -11.921 -18.829 -8.32 1 39.45 ? C29 7QZ 501 A 1 HETATM 30 N N30 7QZ . . . B 2 -12.231 -18.857 -7 1 36.58 ? N30 7QZ 501 A 1 HETATM 31 N N31 7QZ . . . B 2 -7.541 -21.695 -2.128 1 23.31 ? N31 7QZ 501 A 1 HETATM 32 S S32 7QZ . . . B 2 -5.882 -21.747 -2.281 1 24.8 ? S32 7QZ 501 A 1 HETATM 33 C C33 7QZ . . . B 2 -5.175 -20.43 -1.2 1 23.32 ? C33 7QZ 501 A 1 HETATM 34 C C34 7QZ . . . B 2 -5.717 -20.54 0.241 1 26.26 ? C34 7QZ 501 A 1 HETATM 35 F F35 7QZ . . . B 2 -5.224 -19.581 1.033 1 24.21 ? F35 7QZ 501 A 1 HETATM 36 F F36 7QZ . . . B 2 -7.049 -20.439 0.393 1 24.94 ? F36 7QZ 501 A 1 HETATM 37 F F37 7QZ . . . B 2 -5.438 -21.708 0.854 1 24.96 ? F37 7QZ 501 A 1 HETATM 38 O O38 7QZ . . . B 2 -5.452 -21.404 -3.577 1 28.28 ? O38 7QZ 501 A 1 HETATM 39 O O39 7QZ . . . B 2 -5.388 -22.968 -1.794 1 28.66 ? O39 7QZ 501 A 1 HETATM 40 N N40 7QZ . . . B 2 -7.687 -15.6 -8.342 1 19.31 ? N40 7QZ 501 A 1 HETATM 41 C C41 7QZ . . . B 2 -8.65 -16.172 -9.24 1 21.82 ? C41 7QZ 501 A 1 HETATM 42 N N42 7QZ . . . B 2 -8.872 -15.7 -10.558 1 19.78 ? N42 7QZ 501 A 1 HETATM 43 C C43 7QZ . . . B 2 -9.812 -16.209 -11.503 1 23.77 ? C43 7QZ 501 A 1 HETATM 44 C C44 7QZ . . . B 2 -10.393 -17.499 -11.537 1 28.65 ? C44 7QZ 501 A 1 HETATM 45 C C45 7QZ . . . B 2 -11.327 -17.868 -12.52 1 27.26 ? C45 7QZ 501 A 1 HETATM 46 C C46 7QZ . . . B 2 -11.72 -16.957 -13.507 1 27.26 ? C46 7QZ 501 A 1 HETATM 47 C C47 7QZ . . . B 2 -11.181 -15.68 -13.504 1 29.26 ? C47 7QZ 501 A 1 HETATM 48 C C48 7QZ . . . B 2 -10.249 -15.339 -12.502 1 28.45 ? C48 7QZ 501 A 1 HETATM 49 F F49 7QZ . . . B 2 -9.733 -14.124 -12.494 1 31.14 ? F49 7QZ 501 A 1 HETATM 50 O O50 7QZ . . . B 2 -9.3 -17.136 -8.895 1 23.71 ? O50 7QZ 501 A 1 HETATM 51 O O51 7QZ . . . B 2 -5.932 -14.203 -6.697 1 18.81 ? O51 7QZ 501 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #