data_7RUJ # _model_server_result.job_id pUTdgIn81etGHIn1CYCsMw _model_server_result.datetime_utc '2024-11-01 07:30:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ruj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7RUJ # _exptl.entry_id 7RUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RUJ _cell.length_a 125.229 _cell.length_b 125.229 _cell.length_c 137.429 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 226 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 226 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.429 _struct_conn.pdbx_value_order doub # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 7RUJ _atom_sites.fract_transf_matrix[1][1] 0.007985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 407 CL CL . C 3 PLP A 1 502 408 PLP PLP . D 4 HOH A 1 601 450 HOH HOH . D 4 HOH A 2 602 453 HOH HOH . D 4 HOH A 3 603 436 HOH HOH . D 4 HOH A 4 604 455 HOH HOH . D 4 HOH A 5 605 421 HOH HOH . D 4 HOH A 6 606 435 HOH HOH . D 4 HOH A 7 607 440 HOH HOH . D 4 HOH A 8 608 443 HOH HOH . D 4 HOH A 9 609 434 HOH HOH . D 4 HOH A 10 610 449 HOH HOH . D 4 HOH A 11 611 445 HOH HOH . D 4 HOH A 12 612 426 HOH HOH . D 4 HOH A 13 613 418 HOH HOH . D 4 HOH A 14 614 413 HOH HOH . D 4 HOH A 15 615 448 HOH HOH . D 4 HOH A 16 616 446 HOH HOH . D 4 HOH A 17 617 432 HOH HOH . D 4 HOH A 18 618 433 HOH HOH . D 4 HOH A 19 619 427 HOH HOH . D 4 HOH A 20 620 419 HOH HOH . D 4 HOH A 21 621 451 HOH HOH . D 4 HOH A 22 622 420 HOH HOH . D 4 HOH A 23 623 428 HOH HOH . D 4 HOH A 24 624 437 HOH HOH . D 4 HOH A 25 625 411 HOH HOH . D 4 HOH A 26 626 424 HOH HOH . D 4 HOH A 27 627 442 HOH HOH . D 4 HOH A 28 628 452 HOH HOH . D 4 HOH A 29 629 422 HOH HOH . D 4 HOH A 30 630 438 HOH HOH . D 4 HOH A 31 631 417 HOH HOH . D 4 HOH A 32 632 444 HOH HOH . D 4 HOH A 33 633 456 HOH HOH . D 4 HOH A 34 634 441 HOH HOH . D 4 HOH A 35 635 431 HOH HOH . D 4 HOH A 36 636 412 HOH HOH . D 4 HOH A 37 637 429 HOH HOH . D 4 HOH A 38 638 409 HOH HOH . D 4 HOH A 39 639 416 HOH HOH . D 4 HOH A 40 640 454 HOH HOH . D 4 HOH A 41 641 410 HOH HOH . D 4 HOH A 42 642 423 HOH HOH . D 4 HOH A 43 643 430 HOH HOH . D 4 HOH A 44 644 414 HOH HOH . D 4 HOH A 45 645 415 HOH HOH . D 4 HOH A 46 646 425 HOH HOH . D 4 HOH A 47 647 447 HOH HOH . D 4 HOH A 48 648 439 HOH HOH . D 4 HOH A 49 649 457 HOH HOH . D 4 HOH A 50 650 458 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 25.629 45.285 7.742 1 18.86 ? N1 PLP 502 A 1 HETATM 2 C C2 PLP . . . C 3 25.706 46.631 7.995 1 25.25 ? C2 PLP 502 A 1 HETATM 3 C C2A PLP . . . C 3 24.918 47.168 9.156 1 22.54 ? C2A PLP 502 A 1 HETATM 4 C C3 PLP . . . C 3 26.5 47.452 7.183 1 25.23 ? C3 PLP 502 A 1 HETATM 5 O O3 PLP . . . C 3 26.596 48.802 7.431 1 25.31 ? O3 PLP 502 A 1 HETATM 6 C C4 PLP . . . C 3 27.216 46.889 6.12 1 24.02 ? C4 PLP 502 A 1 HETATM 7 C C4A PLP . . . C 3 27.944 47.776 5.152 1 24.18 ? C4A PLP 502 A 1 HETATM 8 C C5 PLP . . . C 3 27.117 45.527 5.865 1 21.51 ? C5 PLP 502 A 1 HETATM 9 C C6 PLP . . . C 3 26.329 44.741 6.691 1 22.86 ? C6 PLP 502 A 1 HETATM 10 C C5A PLP . . . C 3 27.853 44.863 4.725 1 22.58 ? C5A PLP 502 A 1 HETATM 11 O O4P PLP . . . C 3 29.252 44.941 4.92 1 31.33 ? O4P PLP 502 A 1 HETATM 12 P P PLP . . . C 3 30.308 44.456 3.798 1 24.4 ? P PLP 502 A 1 HETATM 13 O O1P PLP . . . C 3 29.921 45.141 2.513 1 25.79 ? O1P PLP 502 A 1 HETATM 14 O O2P PLP . . . C 3 31.669 44.904 4.247 1 25.56 ? O2P PLP 502 A 1 HETATM 15 O O3P PLP . . . C 3 30.309 42.952 3.578 1 26.02 ? O3P PLP 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #