data_7RV2 # _model_server_result.job_id 3m0tvBave5b0RYBu0kWc0w _model_server_result.datetime_utc '2024-11-14 04:38:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7RV2 # _exptl.entry_id 7RV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.583 _cell.angle_gamma 90 _cell.entry_id 7RV2 _cell.length_a 30.825 _cell.length_b 72.896 _cell.length_c 55.539 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -15.851054 0 53.228983 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 141 n n S C1 DMS sing 142 n n S C2 DMS sing 143 n n C1 H11 DMS sing 144 n n C1 H12 DMS sing 145 n n C1 H13 DMS sing 146 n n C2 H21 DMS sing 147 n n C2 H22 DMS sing 148 n n C2 H23 DMS sing 149 n n # _atom_sites.entry_id 7RV2 _atom_sites.fract_transf_matrix[1][1] 0.032441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009661 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 828 A 1 201 201 828 828 . C 3 DMS A 1 202 202 DMS DMS . D 4 SO4 A 1 203 203 SO4 SO4 . E 4 SO4 A 1 204 204 SO4 SO4 . F 4 SO4 A 1 205 205 SO4 SO4 . G 5 CL A 1 206 206 CL CL . H 6 HOH A 1 301 320 HOH HOH . H 6 HOH A 2 302 395 HOH HOH . H 6 HOH A 3 303 319 HOH HOH . H 6 HOH A 4 304 385 HOH HOH . H 6 HOH A 5 305 339 HOH HOH . H 6 HOH A 6 306 331 HOH HOH . H 6 HOH A 7 307 383 HOH HOH . H 6 HOH A 8 308 382 HOH HOH . H 6 HOH A 9 309 377 HOH HOH . H 6 HOH A 10 310 356 HOH HOH . H 6 HOH A 11 311 343 HOH HOH . H 6 HOH A 12 312 351 HOH HOH . H 6 HOH A 13 313 312 HOH HOH . H 6 HOH A 14 314 315 HOH HOH . H 6 HOH A 15 315 380 HOH HOH . H 6 HOH A 16 316 367 HOH HOH . H 6 HOH A 17 317 314 HOH HOH . H 6 HOH A 18 318 340 HOH HOH . H 6 HOH A 19 319 352 HOH HOH . H 6 HOH A 20 320 305 HOH HOH . H 6 HOH A 21 321 336 HOH HOH . H 6 HOH A 22 322 325 HOH HOH . H 6 HOH A 23 323 379 HOH HOH . H 6 HOH A 24 324 321 HOH HOH . H 6 HOH A 25 325 317 HOH HOH . H 6 HOH A 26 326 328 HOH HOH . H 6 HOH A 27 327 301 HOH HOH . H 6 HOH A 28 328 369 HOH HOH . H 6 HOH A 29 329 302 HOH HOH . H 6 HOH A 30 330 389 HOH HOH . H 6 HOH A 31 331 309 HOH HOH . H 6 HOH A 32 332 303 HOH HOH . H 6 HOH A 33 333 311 HOH HOH . H 6 HOH A 34 334 324 HOH HOH . H 6 HOH A 35 335 304 HOH HOH . H 6 HOH A 36 336 318 HOH HOH . H 6 HOH A 37 337 330 HOH HOH . H 6 HOH A 38 338 360 HOH HOH . H 6 HOH A 39 339 365 HOH HOH . H 6 HOH A 40 340 350 HOH HOH . H 6 HOH A 41 341 334 HOH HOH . H 6 HOH A 42 342 359 HOH HOH . H 6 HOH A 43 343 381 HOH HOH . H 6 HOH A 44 344 308 HOH HOH . H 6 HOH A 45 345 333 HOH HOH . H 6 HOH A 46 346 338 HOH HOH . H 6 HOH A 47 347 316 HOH HOH . H 6 HOH A 48 348 375 HOH HOH . H 6 HOH A 49 349 337 HOH HOH . H 6 HOH A 50 350 354 HOH HOH . H 6 HOH A 51 351 313 HOH HOH . H 6 HOH A 52 352 307 HOH HOH . H 6 HOH A 53 353 326 HOH HOH . H 6 HOH A 54 354 353 HOH HOH . H 6 HOH A 55 355 332 HOH HOH . H 6 HOH A 56 356 376 HOH HOH . H 6 HOH A 57 357 370 HOH HOH . H 6 HOH A 58 358 335 HOH HOH . H 6 HOH A 59 359 306 HOH HOH . H 6 HOH A 60 360 310 HOH HOH . H 6 HOH A 61 361 372 HOH HOH . H 6 HOH A 62 362 322 HOH HOH . H 6 HOH A 63 363 344 HOH HOH . H 6 HOH A 64 364 323 HOH HOH . H 6 HOH A 65 365 386 HOH HOH . H 6 HOH A 66 366 342 HOH HOH . H 6 HOH A 67 367 363 HOH HOH . H 6 HOH A 68 368 366 HOH HOH . H 6 HOH A 69 369 387 HOH HOH . H 6 HOH A 70 370 364 HOH HOH . H 6 HOH A 71 371 349 HOH HOH . H 6 HOH A 72 372 374 HOH HOH . H 6 HOH A 73 373 341 HOH HOH . H 6 HOH A 74 374 346 HOH HOH . H 6 HOH A 75 375 362 HOH HOH . H 6 HOH A 76 376 345 HOH HOH . H 6 HOH A 77 377 384 HOH HOH . H 6 HOH A 78 378 391 HOH HOH . H 6 HOH A 79 379 361 HOH HOH . H 6 HOH A 80 380 373 HOH HOH . H 6 HOH A 81 381 392 HOH HOH . H 6 HOH A 82 382 327 HOH HOH . H 6 HOH A 83 383 397 HOH HOH . H 6 HOH A 84 384 355 HOH HOH . H 6 HOH A 85 385 347 HOH HOH . H 6 HOH A 86 386 396 HOH HOH . H 6 HOH A 87 387 368 HOH HOH . H 6 HOH A 88 388 400 HOH HOH . H 6 HOH A 89 389 394 HOH HOH . H 6 HOH A 90 390 393 HOH HOH . H 6 HOH A 91 391 329 HOH HOH . H 6 HOH A 92 392 348 HOH HOH . H 6 HOH A 93 393 358 HOH HOH . H 6 HOH A 94 394 371 HOH HOH . H 6 HOH A 95 395 388 HOH HOH . H 6 HOH A 96 396 399 HOH HOH . H 6 HOH A 97 397 401 HOH HOH . H 6 HOH A 98 398 357 HOH HOH . H 6 HOH A 99 399 390 HOH HOH . H 6 HOH A 100 400 402 HOH HOH . H 6 HOH A 101 401 398 HOH HOH . H 6 HOH A 102 402 378 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -12.749 13.657 39.421 0.81 30.4 ? S DMS 202 A 1 HETATM 2 O O DMS . . . C 3 -11.894 14.544 40.242 0.81 38.09 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . C 3 -12.755 14.375 37.829 0.81 32.34 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . C 3 -11.741 12.274 38.956 0.81 30.09 ? C2 DMS 202 A 1 HETATM 5 H H11 DMS . . . C 3 -13.302 13.839 37.234 0.81 38.81 ? H11 DMS 202 A 1 HETATM 6 H H12 DMS . . . C 3 -11.848 14.412 37.487 0.81 38.81 ? H12 DMS 202 A 1 HETATM 7 H H13 DMS . . . C 3 -13.118 15.273 37.88 0.81 38.81 ? H13 DMS 202 A 1 HETATM 8 H H21 DMS . . . C 3 -12.262 11.662 38.413 0.81 36.11 ? H21 DMS 202 A 1 HETATM 9 H H22 DMS . . . C 3 -11.432 11.816 39.753 0.81 36.11 ? H22 DMS 202 A 1 HETATM 10 H H23 DMS . . . C 3 -10.977 12.587 38.447 0.81 36.11 ? H23 DMS 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #