data_7RV4 # _model_server_result.job_id aq-l9PValM4zlyEwLh8iyQ _model_server_result.datetime_utc '2025-09-30 17:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7RV4 # _exptl.entry_id 7RV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.945 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-chloropyridin-4-yl)-2-{5-(3-cyanophenyl)-3-[3-(1-methyl-1H-pyrazol-4-yl)prop-2-yn-1-yl]-4-oxo-3,4-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl}acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.38 _cell.angle_gamma 90 _cell.entry_id 7RV4 _cell.length_a 30.702 _cell.length_b 72.781 _cell.length_c 55.514 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -15.655313 0 53.260824 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H19 Cl N8 O2' _chem_comp.formula_weight 522.945 _chem_comp.id 7SO _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-chloropyridin-4-yl)-2-{5-(3-cyanophenyl)-3-[3-(1-methyl-1H-pyrazol-4-yl)prop-2-yn-1-yl]-4-oxo-3,4-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N13 7SO sing 1 n n N13 N15 7SO sing 2 n y N13 C12 7SO sing 3 n y N15 C16 7SO doub 4 n y C12 C11 7SO doub 5 n y C16 C11 7SO sing 6 n y C11 C10 7SO sing 7 n n C10 C09 7SO trip 8 n n C09 C08 7SO sing 9 n n C08 N07 7SO sing 10 n n N07 C06 7SO sing 11 n n N07 C02 7SO sing 12 n n C06 N05 7SO doub 13 n n O01 C02 7SO doub 14 n n C02 C03 7SO sing 15 n n N05 C04 7SO sing 16 n n C03 C04 7SO doub 17 n y C03 C19 7SO sing 18 n y C04 N17 7SO sing 19 n y N24 C23 7SO trip 20 n n C23 C22 7SO sing 21 n n C21 C22 7SO doub 22 n y C21 C20 7SO sing 23 n y N17 C28 7SO sing 24 n n N17 C18 7SO sing 25 n y C19 C20 7SO sing 26 n n C19 C18 7SO doub 27 n y C22 C25 7SO sing 28 n y C28 C29 7SO sing 29 n n C20 C27 7SO doub 30 n y O38 C29 7SO doub 31 n n C29 N30 7SO sing 32 n n C25 C26 7SO doub 33 n y C27 C26 7SO sing 34 n y N30 C31 7SO sing 35 n n C37 C31 7SO doub 36 n y C37 C36 7SO sing 37 n y C31 C32 7SO sing 38 n y C36 N35 7SO doub 39 n y C32 C34 7SO doub 40 n y C32 CL33 7SO sing 41 n n N35 C34 7SO sing 42 n y C12 H1 7SO sing 43 n n C16 H2 7SO sing 44 n n C18 H3 7SO sing 45 n n C21 H4 7SO sing 46 n n C25 H5 7SO sing 47 n n C26 H6 7SO sing 48 n n C27 H7 7SO sing 49 n n C28 H8 7SO sing 50 n n C28 H9 7SO sing 51 n n C06 H10 7SO sing 52 n n C08 H11 7SO sing 53 n n C08 H12 7SO sing 54 n n C14 H13 7SO sing 55 n n C14 H14 7SO sing 56 n n C14 H15 7SO sing 57 n n C34 H16 7SO sing 58 n n C36 H17 7SO sing 59 n n C37 H18 7SO sing 60 n n N30 H19 7SO sing 61 n n # _atom_sites.entry_id 7RV4 _atom_sites.fract_transf_matrix[1][1] 0.032571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009574 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7SO A 1 201 201 7SO 153 . C 3 DMS A 1 202 202 DMS DMS . D 4 SO4 A 1 203 203 SO4 SO4 . E 4 SO4 A 1 204 204 SO4 SO4 . F 5 CL A 1 205 205 CL CL . G 5 CL A 1 206 206 CL CL . H 6 HOH A 1 301 406 HOH HOH . H 6 HOH A 2 302 365 HOH HOH . H 6 HOH A 3 303 385 HOH HOH . H 6 HOH A 4 304 315 HOH HOH . H 6 HOH A 5 305 335 HOH HOH . H 6 HOH A 6 306 425 HOH HOH . H 6 HOH A 7 307 379 HOH HOH . H 6 HOH A 8 308 332 HOH HOH . H 6 HOH A 9 309 378 HOH HOH . H 6 HOH A 10 310 334 HOH HOH . H 6 HOH A 11 311 373 HOH HOH . H 6 HOH A 12 312 405 HOH HOH . H 6 HOH A 13 313 355 HOH HOH . H 6 HOH A 14 314 361 HOH HOH . H 6 HOH A 15 315 387 HOH HOH . H 6 HOH A 16 316 336 HOH HOH . H 6 HOH A 17 317 417 HOH HOH . H 6 HOH A 18 318 374 HOH HOH . H 6 HOH A 19 319 415 HOH HOH . H 6 HOH A 20 320 411 HOH HOH . H 6 HOH A 21 321 372 HOH HOH . H 6 HOH A 22 322 395 HOH HOH . H 6 HOH A 23 323 312 HOH HOH . H 6 HOH A 24 324 304 HOH HOH . H 6 HOH A 25 325 414 HOH HOH . H 6 HOH A 26 326 323 HOH HOH . H 6 HOH A 27 327 377 HOH HOH . H 6 HOH A 28 328 360 HOH HOH . H 6 HOH A 29 329 317 HOH HOH . H 6 HOH A 30 330 402 HOH HOH . H 6 HOH A 31 331 307 HOH HOH . H 6 HOH A 32 332 382 HOH HOH . H 6 HOH A 33 333 369 HOH HOH . H 6 HOH A 34 334 345 HOH HOH . H 6 HOH A 35 335 410 HOH HOH . H 6 HOH A 36 336 325 HOH HOH . H 6 HOH A 37 337 340 HOH HOH . H 6 HOH A 38 338 305 HOH HOH . H 6 HOH A 39 339 346 HOH HOH . H 6 HOH A 40 340 309 HOH HOH . H 6 HOH A 41 341 321 HOH HOH . H 6 HOH A 42 342 380 HOH HOH . H 6 HOH A 43 343 302 HOH HOH . H 6 HOH A 44 344 303 HOH HOH . H 6 HOH A 45 345 338 HOH HOH . H 6 HOH A 46 346 386 HOH HOH . H 6 HOH A 47 347 333 HOH HOH . H 6 HOH A 48 348 330 HOH HOH . H 6 HOH A 49 349 397 HOH HOH . H 6 HOH A 50 350 351 HOH HOH . H 6 HOH A 51 351 434 HOH HOH . H 6 HOH A 52 352 362 HOH HOH . H 6 HOH A 53 353 328 HOH HOH . H 6 HOH A 54 354 327 HOH HOH . H 6 HOH A 55 355 301 HOH HOH . H 6 HOH A 56 356 349 HOH HOH . H 6 HOH A 57 357 389 HOH HOH . H 6 HOH A 58 358 343 HOH HOH . H 6 HOH A 59 359 418 HOH HOH . H 6 HOH A 60 360 370 HOH HOH . H 6 HOH A 61 361 347 HOH HOH . H 6 HOH A 62 362 308 HOH HOH . H 6 HOH A 63 363 329 HOH HOH . H 6 HOH A 64 364 324 HOH HOH . H 6 HOH A 65 365 318 HOH HOH . H 6 HOH A 66 366 344 HOH HOH . H 6 HOH A 67 367 356 HOH HOH . H 6 HOH A 68 368 357 HOH HOH . H 6 HOH A 69 369 403 HOH HOH . H 6 HOH A 70 370 383 HOH HOH . H 6 HOH A 71 371 326 HOH HOH . H 6 HOH A 72 372 316 HOH HOH . H 6 HOH A 73 373 367 HOH HOH . H 6 HOH A 74 374 314 HOH HOH . H 6 HOH A 75 375 310 HOH HOH . H 6 HOH A 76 376 368 HOH HOH . H 6 HOH A 77 377 313 HOH HOH . H 6 HOH A 78 378 342 HOH HOH . H 6 HOH A 79 379 366 HOH HOH . H 6 HOH A 80 380 352 HOH HOH . H 6 HOH A 81 381 322 HOH HOH . H 6 HOH A 82 382 423 HOH HOH . H 6 HOH A 83 383 390 HOH HOH . H 6 HOH A 84 384 311 HOH HOH . H 6 HOH A 85 385 435 HOH HOH . H 6 HOH A 86 386 391 HOH HOH . H 6 HOH A 87 387 400 HOH HOH . H 6 HOH A 88 388 320 HOH HOH . H 6 HOH A 89 389 337 HOH HOH . H 6 HOH A 90 390 319 HOH HOH . H 6 HOH A 91 391 375 HOH HOH . H 6 HOH A 92 392 358 HOH HOH . H 6 HOH A 93 393 421 HOH HOH . H 6 HOH A 94 394 306 HOH HOH . H 6 HOH A 95 395 376 HOH HOH . H 6 HOH A 96 396 413 HOH HOH . H 6 HOH A 97 397 412 HOH HOH . H 6 HOH A 98 398 341 HOH HOH . H 6 HOH A 99 399 407 HOH HOH . H 6 HOH A 100 400 399 HOH HOH . H 6 HOH A 101 401 396 HOH HOH . H 6 HOH A 102 402 431 HOH HOH . H 6 HOH A 103 403 438 HOH HOH . H 6 HOH A 104 404 348 HOH HOH . H 6 HOH A 105 405 436 HOH HOH . H 6 HOH A 106 406 363 HOH HOH . H 6 HOH A 107 407 430 HOH HOH . H 6 HOH A 108 408 393 HOH HOH . H 6 HOH A 109 409 426 HOH HOH . H 6 HOH A 110 410 433 HOH HOH . H 6 HOH A 111 411 350 HOH HOH . H 6 HOH A 112 412 408 HOH HOH . H 6 HOH A 113 413 424 HOH HOH . H 6 HOH A 114 414 401 HOH HOH . H 6 HOH A 115 415 339 HOH HOH . H 6 HOH A 116 416 420 HOH HOH . H 6 HOH A 117 417 419 HOH HOH . H 6 HOH A 118 418 394 HOH HOH . H 6 HOH A 119 419 359 HOH HOH . H 6 HOH A 120 420 432 HOH HOH . H 6 HOH A 121 421 364 HOH HOH . H 6 HOH A 122 422 384 HOH HOH . H 6 HOH A 123 423 404 HOH HOH . H 6 HOH A 124 424 439 HOH HOH . H 6 HOH A 125 425 428 HOH HOH . H 6 HOH A 126 426 409 HOH HOH . H 6 HOH A 127 427 392 HOH HOH . H 6 HOH A 128 428 416 HOH HOH . H 6 HOH A 129 429 388 HOH HOH . H 6 HOH A 130 430 427 HOH HOH . H 6 HOH A 131 431 331 HOH HOH . H 6 HOH A 132 432 354 HOH HOH . H 6 HOH A 133 433 437 HOH HOH . H 6 HOH A 134 434 381 HOH HOH . H 6 HOH A 135 435 398 HOH HOH . H 6 HOH A 136 436 371 HOH HOH . H 6 HOH A 137 437 422 HOH HOH . H 6 HOH A 138 438 429 HOH HOH . H 6 HOH A 139 439 353 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7SO . . . B 2 -10.035 5.646 7.071 1 16.8 ? C10 7SO 201 A 1 HETATM 2 C C11 7SO . . . B 2 -9.199 5.574 5.905 1 16.15 ? C11 7SO 201 A 1 HETATM 3 C C12 7SO . . . B 2 -9.379 4.678 4.871 1 18.3 ? C12 7SO 201 A 1 HETATM 4 C C16 7SO . . . B 2 -8.124 6.409 5.648 1 17.72 ? C16 7SO 201 A 1 HETATM 5 C C18 7SO . . . B 2 -10.835 4.063 14.605 1 13.85 ? C18 7SO 201 A 1 HETATM 6 C C19 7SO . . . B 2 -10.368 5.13 13.877 1 14.08 ? C19 7SO 201 A 1 HETATM 7 C C20 7SO . . . B 2 -9.4 6.125 14.47 1 13.88 ? C20 7SO 201 A 1 HETATM 8 C C21 7SO . . . B 2 -8.445 6.695 13.675 1 14.16 ? C21 7SO 201 A 1 HETATM 9 C C22 7SO . . . B 2 -7.513 7.573 14.252 1 14.56 ? C22 7SO 201 A 1 HETATM 10 C C23 7SO . . . B 2 -6.568 8.201 13.357 1 15.01 ? C23 7SO 201 A 1 HETATM 11 C C25 7SO . . . B 2 -7.515 7.845 15.597 1 15.31 ? C25 7SO 201 A 1 HETATM 12 C C26 7SO . . . B 2 -8.471 7.241 16.419 1 15.59 ? C26 7SO 201 A 1 HETATM 13 C C27 7SO . . . B 2 -9.415 6.391 15.836 1 14.98 ? C27 7SO 201 A 1 HETATM 14 C C28 7SO . . . B 2 -12.197 2.122 14.291 1 14.01 ? C28 7SO 201 A 1 HETATM 15 C C29 7SO . . . B 2 -13.476 2.401 15.017 1 15.32 ? C29 7SO 201 A 1 HETATM 16 C C02 7SO . . . B 2 -10.79 5.733 11.353 1 14.48 ? C02 7SO 201 A 1 HETATM 17 C C03 7SO . . . B 2 -10.881 4.99 12.588 1 14.39 ? C03 7SO 201 A 1 HETATM 18 C C04 7SO . . . B 2 -11.632 3.838 12.592 1 13.66 ? C04 7SO 201 A 1 HETATM 19 C C06 7SO . . . B 2 -12.296 4.029 10.428 1 15.06 ? C06 7SO 201 A 1 HETATM 20 C C08 7SO . . . B 2 -11.728 5.888 9.064 1 15.53 ? C08 7SO 201 A 1 HETATM 21 C C09 7SO . . . B 2 -10.721 5.751 8.029 1 16.15 ? C09 7SO 201 A 1 HETATM 22 C C14 7SO . . . B 2 -8.093 4.304 2.751 1 20.08 ? C14 7SO 201 A 1 HETATM 23 C C31 7SO . . . B 2 -14.928 1.485 16.864 1 15.3 ? C31 7SO 201 A 1 HETATM 24 C C32 7SO . . . B 2 -14.947 0.755 18.053 1 14.75 ? C32 7SO 201 A 1 HETATM 25 C C34 7SO . . . B 2 -16.128 0.623 18.756 1 17.12 ? C34 7SO 201 A 1 HETATM 26 C C36 7SO . . . B 2 -17.282 1.768 17.064 1 19.16 ? C36 7SO 201 A 1 HETATM 27 C C37 7SO . . . B 2 -16.114 1.948 16.341 1 18.07 ? C37 7SO 201 A 1 HETATM 28 N N05 7SO . . . B 2 -12.375 3.295 11.55 1 14.22 ? N05 7SO 201 A 1 HETATM 29 N N07 7SO . . . B 2 -11.585 5.196 10.336 1 14.45 ? N07 7SO 201 A 1 HETATM 30 N N13 7SO . . . B 2 -8.374 4.962 4.012 1 18.13 ? N13 7SO 201 A 1 HETATM 31 N N15 7SO . . . B 2 -7.668 6.019 4.43 1 18.24 ? N15 7SO 201 A 1 HETATM 32 N N17 7SO . . . B 2 -11.592 3.297 13.834 1 13.07 ? N17 7SO 201 A 1 HETATM 33 N N24 7SO . . . B 2 -5.814 8.648 12.618 1 16.7 ? N24 7SO 201 A 1 HETATM 34 N N30 7SO . . . B 2 -13.711 1.566 16.117 1 14.27 ? N30 7SO 201 A 1 HETATM 35 N N35 7SO . . . B 2 -17.267 1.112 18.225 1 17.93 ? N35 7SO 201 A 1 HETATM 36 O O01 7SO . . . B 2 -10.211 6.76 11.127 1 15.14 ? O01 7SO 201 A 1 HETATM 37 O O38 7SO . . . B 2 -14.251 3.307 14.692 1 18.93 ? O38 7SO 201 A 1 HETATM 38 CL CL33 7SO . . . B 2 -13.527 0.125 18.759 1 15.15 ? CL33 7SO 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #