data_7RV4 # _model_server_result.job_id -boKSNylOg9DfzQlAtifYQ _model_server_result.datetime_utc '2025-09-10 00:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7RV4 # _exptl.entry_id 7RV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.38 _cell.angle_gamma 90 _cell.entry_id 7RV4 _cell.length_a 30.702 _cell.length_b 72.781 _cell.length_c 55.514 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -15.655313 0 53.260824 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 144 n n S C1 DMS sing 145 n n S C2 DMS sing 146 n n C1 H11 DMS sing 147 n n C1 H12 DMS sing 148 n n C1 H13 DMS sing 149 n n C2 H21 DMS sing 150 n n C2 H22 DMS sing 151 n n C2 H23 DMS sing 152 n n # _atom_sites.entry_id 7RV4 _atom_sites.fract_transf_matrix[1][1] 0.032571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009574 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7SO A 1 201 201 7SO 153 . C 3 DMS A 1 202 202 DMS DMS . D 4 SO4 A 1 203 203 SO4 SO4 . E 4 SO4 A 1 204 204 SO4 SO4 . F 5 CL A 1 205 205 CL CL . G 5 CL A 1 206 206 CL CL . H 6 HOH A 1 301 406 HOH HOH . H 6 HOH A 2 302 365 HOH HOH . H 6 HOH A 3 303 385 HOH HOH . H 6 HOH A 4 304 315 HOH HOH . H 6 HOH A 5 305 335 HOH HOH . H 6 HOH A 6 306 425 HOH HOH . H 6 HOH A 7 307 379 HOH HOH . H 6 HOH A 8 308 332 HOH HOH . H 6 HOH A 9 309 378 HOH HOH . H 6 HOH A 10 310 334 HOH HOH . H 6 HOH A 11 311 373 HOH HOH . H 6 HOH A 12 312 405 HOH HOH . H 6 HOH A 13 313 355 HOH HOH . H 6 HOH A 14 314 361 HOH HOH . H 6 HOH A 15 315 387 HOH HOH . H 6 HOH A 16 316 336 HOH HOH . H 6 HOH A 17 317 417 HOH HOH . H 6 HOH A 18 318 374 HOH HOH . H 6 HOH A 19 319 415 HOH HOH . H 6 HOH A 20 320 411 HOH HOH . H 6 HOH A 21 321 372 HOH HOH . H 6 HOH A 22 322 395 HOH HOH . H 6 HOH A 23 323 312 HOH HOH . H 6 HOH A 24 324 304 HOH HOH . H 6 HOH A 25 325 414 HOH HOH . H 6 HOH A 26 326 323 HOH HOH . H 6 HOH A 27 327 377 HOH HOH . H 6 HOH A 28 328 360 HOH HOH . H 6 HOH A 29 329 317 HOH HOH . H 6 HOH A 30 330 402 HOH HOH . H 6 HOH A 31 331 307 HOH HOH . H 6 HOH A 32 332 382 HOH HOH . H 6 HOH A 33 333 369 HOH HOH . H 6 HOH A 34 334 345 HOH HOH . H 6 HOH A 35 335 410 HOH HOH . H 6 HOH A 36 336 325 HOH HOH . H 6 HOH A 37 337 340 HOH HOH . H 6 HOH A 38 338 305 HOH HOH . H 6 HOH A 39 339 346 HOH HOH . H 6 HOH A 40 340 309 HOH HOH . H 6 HOH A 41 341 321 HOH HOH . H 6 HOH A 42 342 380 HOH HOH . H 6 HOH A 43 343 302 HOH HOH . H 6 HOH A 44 344 303 HOH HOH . H 6 HOH A 45 345 338 HOH HOH . H 6 HOH A 46 346 386 HOH HOH . H 6 HOH A 47 347 333 HOH HOH . H 6 HOH A 48 348 330 HOH HOH . H 6 HOH A 49 349 397 HOH HOH . H 6 HOH A 50 350 351 HOH HOH . H 6 HOH A 51 351 434 HOH HOH . H 6 HOH A 52 352 362 HOH HOH . H 6 HOH A 53 353 328 HOH HOH . H 6 HOH A 54 354 327 HOH HOH . H 6 HOH A 55 355 301 HOH HOH . H 6 HOH A 56 356 349 HOH HOH . H 6 HOH A 57 357 389 HOH HOH . H 6 HOH A 58 358 343 HOH HOH . H 6 HOH A 59 359 418 HOH HOH . H 6 HOH A 60 360 370 HOH HOH . H 6 HOH A 61 361 347 HOH HOH . H 6 HOH A 62 362 308 HOH HOH . H 6 HOH A 63 363 329 HOH HOH . H 6 HOH A 64 364 324 HOH HOH . H 6 HOH A 65 365 318 HOH HOH . H 6 HOH A 66 366 344 HOH HOH . H 6 HOH A 67 367 356 HOH HOH . H 6 HOH A 68 368 357 HOH HOH . H 6 HOH A 69 369 403 HOH HOH . H 6 HOH A 70 370 383 HOH HOH . H 6 HOH A 71 371 326 HOH HOH . H 6 HOH A 72 372 316 HOH HOH . H 6 HOH A 73 373 367 HOH HOH . H 6 HOH A 74 374 314 HOH HOH . H 6 HOH A 75 375 310 HOH HOH . H 6 HOH A 76 376 368 HOH HOH . H 6 HOH A 77 377 313 HOH HOH . H 6 HOH A 78 378 342 HOH HOH . H 6 HOH A 79 379 366 HOH HOH . H 6 HOH A 80 380 352 HOH HOH . H 6 HOH A 81 381 322 HOH HOH . H 6 HOH A 82 382 423 HOH HOH . H 6 HOH A 83 383 390 HOH HOH . H 6 HOH A 84 384 311 HOH HOH . H 6 HOH A 85 385 435 HOH HOH . H 6 HOH A 86 386 391 HOH HOH . H 6 HOH A 87 387 400 HOH HOH . H 6 HOH A 88 388 320 HOH HOH . H 6 HOH A 89 389 337 HOH HOH . H 6 HOH A 90 390 319 HOH HOH . H 6 HOH A 91 391 375 HOH HOH . H 6 HOH A 92 392 358 HOH HOH . H 6 HOH A 93 393 421 HOH HOH . H 6 HOH A 94 394 306 HOH HOH . H 6 HOH A 95 395 376 HOH HOH . H 6 HOH A 96 396 413 HOH HOH . H 6 HOH A 97 397 412 HOH HOH . H 6 HOH A 98 398 341 HOH HOH . H 6 HOH A 99 399 407 HOH HOH . H 6 HOH A 100 400 399 HOH HOH . H 6 HOH A 101 401 396 HOH HOH . H 6 HOH A 102 402 431 HOH HOH . H 6 HOH A 103 403 438 HOH HOH . H 6 HOH A 104 404 348 HOH HOH . H 6 HOH A 105 405 436 HOH HOH . H 6 HOH A 106 406 363 HOH HOH . H 6 HOH A 107 407 430 HOH HOH . H 6 HOH A 108 408 393 HOH HOH . H 6 HOH A 109 409 426 HOH HOH . H 6 HOH A 110 410 433 HOH HOH . H 6 HOH A 111 411 350 HOH HOH . H 6 HOH A 112 412 408 HOH HOH . H 6 HOH A 113 413 424 HOH HOH . H 6 HOH A 114 414 401 HOH HOH . H 6 HOH A 115 415 339 HOH HOH . H 6 HOH A 116 416 420 HOH HOH . H 6 HOH A 117 417 419 HOH HOH . H 6 HOH A 118 418 394 HOH HOH . H 6 HOH A 119 419 359 HOH HOH . H 6 HOH A 120 420 432 HOH HOH . H 6 HOH A 121 421 364 HOH HOH . H 6 HOH A 122 422 384 HOH HOH . H 6 HOH A 123 423 404 HOH HOH . H 6 HOH A 124 424 439 HOH HOH . H 6 HOH A 125 425 428 HOH HOH . H 6 HOH A 126 426 409 HOH HOH . H 6 HOH A 127 427 392 HOH HOH . H 6 HOH A 128 428 416 HOH HOH . H 6 HOH A 129 429 388 HOH HOH . H 6 HOH A 130 430 427 HOH HOH . H 6 HOH A 131 431 331 HOH HOH . H 6 HOH A 132 432 354 HOH HOH . H 6 HOH A 133 433 437 HOH HOH . H 6 HOH A 134 434 381 HOH HOH . H 6 HOH A 135 435 398 HOH HOH . H 6 HOH A 136 436 371 HOH HOH . H 6 HOH A 137 437 422 HOH HOH . H 6 HOH A 138 438 429 HOH HOH . H 6 HOH A 139 439 353 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -3.311 18.227 14.008 0.6 37.43 ? S DMS 202 A 1 HETATM 2 O O DMS . . . C 3 -2.608 18.855 15.176 0.6 38.97 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . C 3 -2.088 17.483 12.998 0.6 39.55 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . C 3 -4.04 16.745 14.639 0.6 39.17 ? C2 DMS 202 A 1 HETATM 5 H H11 DMS . . . C 3 -2.511 17.066 12.231 0.6 47.46 ? H11 DMS 202 A 1 HETATM 6 H H12 DMS . . . C 3 -1.612 16.81 13.509 0.6 47.46 ? H12 DMS 202 A 1 HETATM 7 H H13 DMS . . . C 3 -1.463 18.16 12.694 0.6 47.46 ? H13 DMS 202 A 1 HETATM 8 H H21 DMS . . . C 3 -4.514 16.288 13.926 0.6 46.99 ? H21 DMS 202 A 1 HETATM 9 H H22 DMS . . . C 3 -4.662 16.967 15.349 0.6 46.99 ? H22 DMS 202 A 1 HETATM 10 H H23 DMS . . . C 3 -3.345 16.165 14.988 0.6 46.99 ? H23 DMS 202 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 797 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #